HEADER METAL BINDING PROTEIN 09-APR-09 3H0N TITLE CRYSTAL STRUCTURE OF A DUF1470 FAMILY PROTEIN (JANN_2411) FROM TITLE 2 JANNASCHIA SP. CCS1 AT 1.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN DUF1470; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANNASCHIA SP. CCS1; SOURCE 3 ORGANISM_TAXID: 290400; SOURCE 4 GENE: JANN_2411, YP_510353.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TREBLE CLEF ZINC FINGER, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 20-NOV-24 3H0N 1 REMARK REVDAT 7 01-FEB-23 3H0N 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 3H0N 1 REMARK LINK REVDAT 5 25-OCT-17 3H0N 1 REMARK REVDAT 4 13-JUL-11 3H0N 1 VERSN REVDAT 3 23-MAR-11 3H0N 1 HEADER TITLE KEYWDS REVDAT 2 10-NOV-10 3H0N 1 JRNL REVDAT 1 21-APR-09 3H0N 0 SPRSDE 21-APR-09 3H0N 2PW4 JRNL AUTH C.BAKOLITSA,A.BATEMAN,K.K.JIN,D.MCMULLAN,S.S.KRISHNA, JRNL AUTH 2 M.D.MILLER,P.ABDUBEK,C.ACOSTA,T.ASTAKHOVA,H.L.AXELROD, JRNL AUTH 3 P.BURRA,D.CARLTON,H.J.CHIU,T.CLAYTON,D.DAS,M.C.DELLER, JRNL AUTH 4 L.DUAN,Y.ELIAS,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK, JRNL AUTH 5 S.K.GRZECHNIK,G.W.HAN,L.JAROSZEWSKI,H.E.KLOCK,M.W.KNUTH, JRNL AUTH 6 P.KOZBIAL,A.KUMAR,D.MARCIANO,A.T.MORSE,K.D.MURPHY, JRNL AUTH 7 E.NIGOGHOSSIAN,L.OKACH,S.OOMMACHEN,J.PAULSEN,R.REYES, JRNL AUTH 8 C.L.RIFE,N.SEFCOVIC,H.TIEN,C.B.TRAME,C.V.TROUT, JRNL AUTH 9 H.VAN DEN BEDEM,D.WEEKES,A.WHITE,Q.XU,K.O.HODGSON,J.WOOLEY, JRNL AUTH10 M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.LESLEY,I.A.WILSON JRNL TITL THE STRUCTURE OF JANN_2411 (DUF1470) FROM JANNASCHIA SP. AT JRNL TITL 2 1.45  RESOLUTION REVEALS A NEW FOLD (THE ABATE DOMAIN) JRNL TITL 3 AND SUGGESTS ITS POSSIBLE ROLE AS A TRANSCRIPTION REGULATOR. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1198 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944211 JRNL DOI 10.1107/S1744309109025196 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 36254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1410 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 13.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.706 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1557 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1025 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2125 ; 1.443 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2489 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 5.532 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;27.346 ;23.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 242 ;11.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1815 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 323 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 981 ; 1.317 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 392 ; 0.343 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1572 ; 2.179 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 576 ; 3.561 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 551 ; 5.288 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4020 24.8910 20.0300 REMARK 3 T TENSOR REMARK 3 T11: -0.0043 T22: -0.0157 REMARK 3 T33: -0.0404 T12: -0.0147 REMARK 3 T13: 0.0143 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.0342 L22: 1.0306 REMARK 3 L33: 2.5514 L12: 0.0489 REMARK 3 L13: -1.7823 L23: -0.1692 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: -0.1301 S13: 0.0295 REMARK 3 S21: 0.0419 S22: -0.1330 S23: -0.0257 REMARK 3 S31: -0.2300 S32: 0.1880 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7930 17.5010 19.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0617 REMARK 3 T33: 0.0397 T12: 0.0062 REMARK 3 T13: -0.0079 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.0742 L22: 1.5469 REMARK 3 L33: 2.3547 L12: 0.3361 REMARK 3 L13: -0.3854 L23: -1.6508 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.0020 S13: -0.0412 REMARK 3 S21: 0.1714 S22: -0.1234 S23: -0.1560 REMARK 3 S31: -0.1543 S32: 0.2349 S33: 0.1142 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5160 20.0580 15.4470 REMARK 3 T TENSOR REMARK 3 T11: -0.0135 T22: -0.0041 REMARK 3 T33: -0.0208 T12: 0.0095 REMARK 3 T13: 0.0029 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5545 L22: 0.0731 REMARK 3 L33: 0.4974 L12: 0.0526 REMARK 3 L13: -0.2355 L23: -0.1188 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.0058 S13: -0.0346 REMARK 3 S21: -0.0068 S22: 0.0075 S23: 0.0068 REMARK 3 S31: 0.0065 S32: 0.0372 S33: 0.0094 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4570 42.7370 3.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.1348 REMARK 3 T33: 0.0460 T12: -0.0731 REMARK 3 T13: -0.0096 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 6.7983 L22: 9.0271 REMARK 3 L33: 6.4768 L12: 7.7182 REMARK 3 L13: -1.2881 L23: -2.7461 REMARK 3 S TENSOR REMARK 3 S11: -0.5266 S12: 0.7407 S13: 0.0487 REMARK 3 S21: -0.5176 S22: 0.5093 S23: 0.1010 REMARK 3 S31: -0.2887 S32: 0.1484 S33: 0.0174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4.ONE ZN ION, ONE NI ION, TWO NA IONS, THREE ACETATE IONS AND REMARK 3 TWO GLYCEROL MOLECULES WERE MODELED. THE PRESENCE OF THE ZN AND REMARK 3 NI ATOMS ARE SUPPORTED BY X-RAY FLUORESCENCE MEASUREMENTS, REMARK 3 ANOMALOUS DIFFERENCE FOURIERS ABOVE AND BELOW THE NI AND ZN REMARK 3 ABSORPTION EDGES AND GEOMETRY. 5.RESIDUES 0 AND 185 TO 187 ARE REMARK 3 DISORDERED AND NOT MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3H0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97920,0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36254 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 25.786 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.40M SODIUM ACETATE, 0.10M SODIUM REMARK 280 CACODYLATE PH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.87500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.87500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -36.22237 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.06764 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ARG A 185 REMARK 465 ALA A 186 REMARK 465 THR A 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 NZ REMARK 470 ARG A 161 CD NE CZ NH1 NH2 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 LYS A 177 CE NZ REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 113 47.54 -94.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 92 O REMARK 620 2 ARG A 93 O 88.5 REMARK 620 3 HIS A 95 O 77.6 102.9 REMARK 620 4 HOH A 274 O 164.9 85.6 90.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 ND1 REMARK 620 2 HIS A 114 NE2 97.6 REMARK 620 3 ACT A 207 OXT 109.0 98.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 ND1 REMARK 620 2 HIS A 114 NE2 112.1 REMARK 620 3 HOH A 315 O 102.7 96.3 REMARK 620 4 HOH A 448 O 92.7 150.1 93.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 SG REMARK 620 2 CYS A 152 SG 109.9 REMARK 620 3 CYS A 168 SG 110.7 107.3 REMARK 620 4 CYS A 172 SG 112.0 110.2 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 O REMARK 620 2 ALA A 149 O 112.9 REMARK 620 3 CYS A 152 O 82.8 96.3 REMARK 620 4 HOH A 210 O 157.7 86.8 84.7 REMARK 620 5 HOH A 232 O 99.1 88.3 173.9 91.6 REMARK 620 6 HOH A 449 O 92.3 154.8 85.8 68.4 88.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374450 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3H0N A 1 187 UNP Q28PN4 Q28PN4_JANSC 1 187 SEQADV 3H0N GLY A 0 UNP Q28PN4 EXPRESSION TAG SEQRES 1 A 188 GLY MSE ASN LEU ASP SER TYR GLU ARG THR GLY LEU ARG SEQRES 2 A 188 VAL SER LEU ASP LEU VAL ASN ILE ALA THR PRO GLY SER SEQRES 3 A 188 ARG ARG GLY THR PRO HIS THR GLY GLY CYS VAL ILE GLU SEQRES 4 A 188 ASP LEU HIS ASP LEU LEU LYS ASP ASP PRO ALA SER VAL SEQRES 5 A 188 ALA GLN LEU GLY ASP ASP HIS VAL GLU GLY PHE VAL GLU SEQRES 6 A 188 LEU ALA ARG LEU LEU HIS THR ALA ILE ASP ALA LEU SER SEQRES 7 A 188 ASN GLY GLN VAL ALA THR ALA ALA THR ALA LEU ASN HIS SEQRES 8 A 188 LEU LEU ARG LYS HIS PRO ALA THR PRO GLU LEU ALA GLN SEQRES 9 A 188 ASP PRO ASP GLY THR TRP ARG LEU HIS HIS HIS PRO LEU SEQRES 10 A 188 ASP ALA GLU LEU VAL PRO MSE TRP THR ALA ILE CYS ALA SEQRES 11 A 188 GLU GLY LEU ALA ARG GLU ILE GLY HIS GLN ASN VAL ARG SEQRES 12 A 188 ARG PHE GLY ILE CYS ASN ALA HIS ARG CYS ASP ARG VAL SEQRES 13 A 188 TYR PHE ASP THR SER ARG ASN GLY THR ARG GLN TYR CYS SEQRES 14 A 188 SER LEU ALA CYS GLN ASN ARG VAL LYS ALA ALA ALA PHE SEQRES 15 A 188 ARG GLU ARG ARG ALA THR MODRES 3H0N MSE A 1 MET SELENOMETHIONINE MODRES 3H0N MSE A 123 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 123 16 HET ZN A 201 1 HET NI A 202 2 HET NA A 203 1 HET NA A 204 1 HET GOL A 205 6 HET GOL A 206 6 HET ACT A 207 4 HET ACT A 208 4 HET ACT A 209 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 NI NI 2+ FORMUL 4 NA 2(NA 1+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 11 HOH *240(H2 O) HELIX 1 1 SER A 5 GLU A 7 5 3 HELIX 2 2 ARG A 8 THR A 22 1 15 HELIX 3 3 VAL A 36 LEU A 44 1 9 HELIX 4 4 ASP A 47 LEU A 54 1 8 HELIX 5 5 ASP A 57 ASN A 78 1 22 HELIX 6 6 GLN A 80 HIS A 95 1 16 HELIX 7 7 GLU A 119 HIS A 138 1 20 HELIX 8 8 ASN A 140 ARG A 142 5 3 HELIX 9 9 SER A 169 ALA A 180 1 12 SHEET 1 A 2 GLY A 24 ARG A 26 0 SHEET 2 A 2 THR A 29 HIS A 31 -1 O THR A 29 N ARG A 26 SHEET 1 B 2 GLU A 100 GLN A 103 0 SHEET 2 B 2 TRP A 109 HIS A 112 -1 O HIS A 112 N GLU A 100 SHEET 1 C 2 PHE A 144 ILE A 146 0 SHEET 2 C 2 VAL A 155 PHE A 157 -1 O TYR A 156 N GLY A 145 LINK C MSE A 1 N ASN A 2 1555 1555 1.34 LINK C PRO A 122 N AMSE A 123 1555 1555 1.33 LINK C PRO A 122 N BMSE A 123 1555 1555 1.32 LINK C AMSE A 123 N TRP A 124 1555 1555 1.33 LINK C BMSE A 123 N TRP A 124 1555 1555 1.33 LINK O LEU A 92 NA NA A 204 1555 1555 2.46 LINK O ARG A 93 NA NA A 204 1555 1555 2.62 LINK O HIS A 95 NA NA A 204 1555 1555 2.34 LINK ND1 HIS A 112 NI B NI A 202 1555 1555 2.51 LINK ND1 HIS A 112 NI A NI A 202 1555 1555 2.05 LINK NE2 HIS A 114 NI B NI A 202 1555 1555 2.38 LINK NE2 HIS A 114 NI A NI A 202 1555 1555 2.38 LINK SG CYS A 147 ZN ZN A 201 1555 1555 2.31 LINK O CYS A 147 NA NA A 203 1555 1555 2.39 LINK O ALA A 149 NA NA A 203 1555 1555 2.40 LINK SG CYS A 152 ZN ZN A 201 1555 1555 2.33 LINK O CYS A 152 NA NA A 203 1555 1555 2.29 LINK SG CYS A 168 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 172 ZN ZN A 201 1555 1555 2.30 LINK NI B NI A 202 OXT ACT A 207 1555 1555 2.74 LINK NI A NI A 202 O HOH A 315 1555 1555 2.22 LINK NI A NI A 202 O AHOH A 448 1555 1555 2.39 LINK NA NA A 203 O HOH A 210 1555 1555 2.39 LINK NA NA A 203 O HOH A 232 1555 1555 2.33 LINK NA NA A 203 O AHOH A 449 1555 1555 2.76 LINK NA NA A 204 O HOH A 274 1555 1555 2.36 SITE 1 AC1 4 CYS A 147 CYS A 152 CYS A 168 CYS A 172 SITE 1 AC2 5 HIS A 112 HIS A 114 ACT A 207 HOH A 315 SITE 2 AC2 5 HOH A 448 SITE 1 AC3 7 CYS A 147 ASN A 148 ALA A 149 CYS A 152 SITE 2 AC3 7 HOH A 210 HOH A 232 HOH A 449 SITE 1 AC4 6 LEU A 92 ARG A 93 HIS A 95 HOH A 248 SITE 2 AC4 6 HOH A 251 HOH A 274 SITE 1 AC5 5 GLU A 7 ARG A 110 GLN A 139 HOH A 268 SITE 2 AC5 5 HOH A 445 SITE 1 AC6 4 ASN A 19 ARG A 26 ARG A 27 CYS A 168 SITE 1 AC7 8 TYR A 6 LEU A 111 HIS A 112 HIS A 113 SITE 2 AC7 8 HIS A 114 ILE A 127 NI A 202 HOH A 255 SITE 1 AC8 6 VAL A 141 ARG A 151 HOH A 230 HOH A 297 SITE 2 AC8 6 HOH A 415 HOH A 425 SITE 1 AC9 5 PRO A 96 ALA A 97 THR A 98 HOH A 251 SITE 2 AC9 5 HOH A 274 CRYST1 77.750 59.670 57.820 90.00 128.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012862 0.000000 0.010338 0.00000 SCALE2 0.000000 0.016759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022189 0.00000 HETATM 1 N MSE A 1 -12.044 34.427 19.993 1.00 31.72 N HETATM 2 CA MSE A 1 -11.404 33.155 20.446 1.00 31.43 C HETATM 3 C MSE A 1 -10.006 33.275 21.099 1.00 28.22 C HETATM 4 O MSE A 1 -9.122 33.970 20.574 1.00 30.97 O HETATM 5 CB MSE A 1 -11.261 32.209 19.243 1.00 34.64 C HETATM 6 CG MSE A 1 -10.260 31.105 19.504 1.00 31.49 C HETATM 7 SE MSE A 1 -9.998 29.802 18.142 0.75 24.98 SE HETATM 8 CE MSE A 1 -11.892 29.645 17.485 1.00 17.37 C