HEADER HYDROLASE 11-APR-09 3H17 TITLE CRYSTAL STRUCTURE OF ESTE5-PMSF (I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE/LIPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ESTE5; COMPND 5 EC: 3.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 GENE: ESTE5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A; SOURCE 10 OTHER_DETAILS: SOIL METAGENOME LIBRARY KEYWDS HSL, ESTE5, ESTERASE, LIPASE, HYDROLASE, PMSF, PHENYLMETHYLSULFONYL KEYWDS 2 FLUORIDE EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.HWANG,K.H.NAM REVDAT 5 30-OCT-24 3H17 1 REMARK REVDAT 4 01-NOV-23 3H17 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3H17 1 VERSN REVDAT 2 17-NOV-09 3H17 1 JRNL REVDAT 1 28-APR-09 3H17 0 JRNL AUTH K.H.NAM,S.J.KIM,A.PRIYADARSHI,H.S.KIM,K.Y.HWANG JRNL TITL THE CRYSTAL STRUCTURE OF AN HSL-HOMOLOG ESTE5 COMPLEX WITH JRNL TITL 2 PMSF REVEALS A UNIQUE CONFIGURATION THAT INHIBITS THE JRNL TITL 3 NUCLEOPHILE SER144 IN CATALYTIC TRIADS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 389 247 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19715665 JRNL DOI 10.1016/J.BBRC.2009.08.123 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 9111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 473 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 475 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.621 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.780 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2269 ; 0.032 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3078 ; 2.871 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 8.827 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;38.778 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;22.479 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1723 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1184 ; 0.277 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1541 ; 0.339 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 106 ; 0.227 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.075 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 1.285 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2321 ; 1.956 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 896 ; 3.396 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 757 ; 5.040 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3432 15.2226 0.0917 REMARK 3 T TENSOR REMARK 3 T11: -0.0459 T22: -0.0500 REMARK 3 T33: -0.0725 T12: -0.0399 REMARK 3 T13: -0.0110 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.3553 L22: 1.2024 REMARK 3 L33: 2.7375 L12: 0.4908 REMARK 3 L13: 0.0584 L23: -0.4456 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 0.0798 S13: -0.0190 REMARK 3 S21: -0.1271 S22: 0.0470 S23: -0.0718 REMARK 3 S31: 0.1207 S32: 0.0866 S33: -0.0545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3FAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 7.5, 2.2M AMMONIUM REMARK 280 SULFATE, 0.2M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.45950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.56850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.56850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.22975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.56850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.56850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.68925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.56850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.56850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.22975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.56850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.56850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.68925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.45950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 ALA A -11 REMARK 465 SER A -10 REMARK 465 MET A -9 REMARK 465 THR A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 GLN A -5 REMARK 465 GLN A -4 REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 MET A 193 REMARK 465 VAL A 194 REMARK 465 ALA A 195 REMARK 465 PRO A 196 REMARK 465 LEU A 298 REMARK 465 ALA A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 106 CE2 TYR A 106 CD2 0.093 REMARK 500 CYS A 179 CB CYS A 179 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 18 CB - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 PRO A 19 CB - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 PRO A 20 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 PRO A 20 C - N - CD ANGL. DEV. = -18.4 DEGREES REMARK 500 ASP A 27 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 102 CB - CG - CD2 ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 149 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 191 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 PRO A 192 C - N - CD ANGL. DEV. = -22.8 DEGREES REMARK 500 ARG A 205 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PRO A 219 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 LEU A 227 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 241 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LYS A 252 CD - CE - NZ ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 19 172.41 -54.30 REMARK 500 PRO A 25 156.07 -49.56 REMARK 500 PHE A 114 137.93 -38.28 REMARK 500 SER A 144 -116.73 73.52 REMARK 500 ASP A 176 104.20 -165.96 REMARK 500 CYS A 179 53.31 32.77 REMARK 500 LYS A 185 -78.68 -91.12 REMARK 500 VAL A 234 147.38 178.41 REMARK 500 ASP A 237 57.14 -93.42 REMARK 500 ASP A 265 7.39 53.47 REMARK 500 HIS A 268 122.31 -35.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 19 PRO A 20 139.22 REMARK 500 ASP A 191 PRO A 192 144.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FAK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5 (NATIVE) REMARK 900 RELATED ID: 3G9U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY P-NITROPHENYL BUTYRATE REMARK 900 FOR 5MIN REMARK 900 RELATED ID: 3G9V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY P-NITROPHENYL BUTYRATE REMARK 900 FOR 5SEC REMARK 900 RELATED ID: 3G9Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY P-NITROPHENYL CAPRYLATE REMARK 900 RELATED ID: 3H18 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5-PMSF (II) REMARK 900 RELATED ID: 3H19 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY METHYL ALCOHOL REMARK 900 RELATED ID: 3H1A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY ETHYL ALCOHOL REMARK 900 RELATED ID: 3H1B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTE5, WAS SOAKED BY ISOPROPYL ALCOHOL DBREF 3H17 A 1 297 UNP Q0GMU2 Q0GMU2_9BACT 1 297 SEQADV 3H17 MET A -12 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 ALA A -11 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 SER A -10 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 MET A -9 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 THR A -8 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 GLY A -7 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 GLY A -6 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 GLN A -5 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 GLN A -4 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 MET A -3 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 GLY A -2 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 ARG A -1 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 GLY A 0 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 LEU A 298 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 ALA A 299 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 ALA A 300 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 ALA A 301 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 LEU A 302 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 GLU A 303 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 HIS A 304 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 HIS A 305 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 HIS A 306 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 HIS A 307 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 HIS A 308 UNP Q0GMU2 EXPRESSION TAG SEQADV 3H17 HIS A 309 UNP Q0GMU2 EXPRESSION TAG SEQRES 1 A 322 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 322 MET ALA GLY PRO GLU ILE VAL LYS LEU LYS LYS ILE LEU SEQRES 3 A 322 ARG GLU LYS ALA VAL PRO PRO GLY THR GLU VAL PRO LEU SEQRES 4 A 322 ASP VAL MET ARG LYS GLY MET GLU LYS VAL ALA PHE LYS SEQRES 5 A 322 ALA ALA ASP ASP ILE GLN VAL GLU GLN VAL THR VAL ALA SEQRES 6 A 322 GLY CYS ALA ALA GLU TRP VAL ARG ALA PRO GLY CYS GLN SEQRES 7 A 322 ALA GLY LYS ALA ILE LEU TYR LEU HIS GLY GLY GLY TYR SEQRES 8 A 322 VAL MET GLY SER ILE ASN THR HIS ARG SER MET VAL GLY SEQRES 9 A 322 GLU ILE SER ARG ALA SER GLN ALA ALA ALA LEU LEU LEU SEQRES 10 A 322 ASP TYR ARG LEU ALA PRO GLU HIS PRO PHE PRO ALA ALA SEQRES 11 A 322 VAL GLU ASP GLY VAL ALA ALA TYR ARG TRP LEU LEU ASP SEQRES 12 A 322 GLN GLY PHE LYS PRO GLN HIS LEU SER ILE SER GLY ASP SEQRES 13 A 322 SER ALA GLY GLY GLY LEU VAL LEU ALA VAL LEU VAL SER SEQRES 14 A 322 ALA ARG ASP GLN GLY LEU PRO MET PRO ALA SER ALA ILE SEQRES 15 A 322 PRO ILE SER PRO TRP ALA ASP MET THR CYS THR ASN ASP SEQRES 16 A 322 SER PHE LYS THR ARG ALA GLU ALA ASP PRO MET VAL ALA SEQRES 17 A 322 PRO GLY GLY ILE ASN LYS MET ALA ALA ARG TYR LEU ASN SEQRES 18 A 322 GLY ALA ASP ALA LYS HIS PRO TYR ALA SER PRO ASN PHE SEQRES 19 A 322 ALA ASN LEU LYS GLY LEU PRO PRO LEU LEU ILE HIS VAL SEQRES 20 A 322 GLY ARG ASP GLU VAL LEU LEU ASP ASP SER ILE LYS LEU SEQRES 21 A 322 ASP ALA LYS ALA LYS ALA ASP GLY VAL LYS SER THR LEU SEQRES 22 A 322 GLU ILE TRP ASP ASP MET ILE HIS VAL TRP HIS ALA PHE SEQRES 23 A 322 HIS PRO MET LEU PRO GLU GLY LYS GLN ALA ILE VAL ARG SEQRES 24 A 322 VAL GLY GLU PHE MET ARG GLU GLN TRP ALA ALA LEU ALA SEQRES 25 A 322 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET PMS A 310 10 HETNAM PMS PHENYLMETHANESULFONIC ACID FORMUL 2 PMS C7 H8 O3 S FORMUL 3 HOH *10(H2 O) HELIX 1 1 PRO A 4 ALA A 17 1 14 HELIX 2 2 PRO A 25 VAL A 36 1 12 HELIX 3 3 SER A 82 GLN A 98 1 17 HELIX 4 4 PRO A 115 GLN A 131 1 17 HELIX 5 5 LYS A 134 GLN A 136 5 3 HELIX 6 6 SER A 144 GLN A 160 1 17 HELIX 7 7 ASP A 182 ARG A 187 1 6 HELIX 8 8 GLY A 197 ASN A 208 1 12 HELIX 9 9 SER A 218 ALA A 222 5 5 HELIX 10 10 LEU A 240 GLY A 255 1 16 HELIX 11 11 VAL A 269 HIS A 274 5 6 HELIX 12 12 LEU A 277 ALA A 297 1 21 SHEET 1 A 6 GLN A 45 VAL A 51 0 SHEET 2 A 6 CYS A 54 ARG A 60 -1 O ARG A 60 N GLN A 45 SHEET 3 A 6 ALA A 100 LEU A 104 -1 O LEU A 103 N GLU A 57 SHEET 4 A 6 ALA A 69 LEU A 73 1 N ILE A 70 O LEU A 102 SHEET 5 A 6 LEU A 138 ASP A 143 1 O SER A 141 N LEU A 71 SHEET 6 A 6 SER A 167 ILE A 171 1 O ILE A 171 N GLY A 142 SHEET 1 B 2 LEU A 230 GLY A 235 0 SHEET 2 B 2 SER A 258 TRP A 263 1 O GLU A 261 N ILE A 232 LINK OG SER A 144 S PMS A 310 1555 1555 1.76 CISPEP 1 ALA A 109 PRO A 110 0 6.69 CISPEP 2 PHE A 114 PRO A 115 0 7.44 SITE 1 AC1 8 GLY A 76 GLY A 77 MET A 80 SER A 144 SITE 2 AC1 8 ALA A 145 TRP A 174 MET A 202 HIS A 268 CRYST1 61.137 61.137 148.919 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016357 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006715 0.00000