HEADER SIGNALING PROTEIN 14-APR-09 3H2D TITLE CRYSTAL STRUCTURE OF A CHEMOTACTIC CHEC-LIKE PROTEIN (SO_3915) FROM TITLE 2 SHEWANELLA ONEIDENSIS MR-1 AT 1.86 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEC-LIKE SUPERFAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: NP_719446.1, SO_3915; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3H2D 1 REMARK SEQADV REVDAT 5 24-JUL-19 3H2D 1 REMARK LINK REVDAT 4 25-OCT-17 3H2D 1 REMARK REVDAT 3 13-JUL-11 3H2D 1 VERSN REVDAT 2 23-MAR-11 3H2D 1 HEADER TITLE KEYWDS REVDAT 1 28-APR-09 3H2D 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CHEC-LIKE SUPERFAMILY PROTEIN JRNL TITL 2 (NP_719446.1) FROM SHEWANELLA ONEIDENSIS AT 1.86 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 26265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1786 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2465 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1598 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3358 ; 1.602 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4000 ; 0.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 6.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;37.057 ;27.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;12.925 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2818 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 430 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 494 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1626 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1245 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1299 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 146 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1687 ; 1.746 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 671 ; 0.309 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2649 ; 2.556 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 882 ; 3.777 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 709 ; 5.231 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7512 12.4447 8.7441 REMARK 3 T TENSOR REMARK 3 T11: -0.0343 T22: -0.0341 REMARK 3 T33: -0.0665 T12: -0.0015 REMARK 3 T13: -0.0067 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.3743 L22: 2.1760 REMARK 3 L33: 1.4469 L12: 0.1278 REMARK 3 L13: -0.0057 L23: 0.3668 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.1304 S13: 0.0045 REMARK 3 S21: -0.1825 S22: -0.0195 S23: -0.0184 REMARK 3 S31: -0.0051 S32: 0.0449 S33: 0.0422 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6105 21.7659 29.4305 REMARK 3 T TENSOR REMARK 3 T11: -0.0588 T22: -0.0849 REMARK 3 T33: -0.0881 T12: 0.0069 REMARK 3 T13: 0.0077 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.2336 L22: 1.4272 REMARK 3 L33: 1.2741 L12: -0.1149 REMARK 3 L13: 0.0583 L23: 0.3718 REMARK 3 S TENSOR REMARK 3 S11: -0.0626 S12: -0.0580 S13: 0.0752 REMARK 3 S21: 0.1739 S22: 0.0531 S23: -0.0438 REMARK 3 S31: 0.0802 S32: 0.0601 S33: 0.0095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. SULFATE REMARK 3 (SO4) ION AND GLYCEROL (GOL) MOLECULE ARE MODELED BASED ON REMARK 3 CRYSTALLIZATION AND CRYOPROTECTION CONDITIONS. REMARK 4 REMARK 4 3H2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97961, 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26303 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 28.606 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.60M MGSO4, 0.1M MES PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.16350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.01950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.51200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.01950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.16350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.51200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 154 REMARK 465 SER B 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 SE CE REMARK 470 VAL A 3 CG1 CG2 REMARK 470 GLN A 11 CD OE1 NE2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 29 CD CE NZ REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 LEU A 37 CG CD1 CD2 REMARK 470 LYS A 107 CE NZ REMARK 470 ASN A 131 OD1 ND2 REMARK 470 LYS B 29 CD CE NZ REMARK 470 GLN B 31 OE1 NE2 REMARK 470 ASP B 35 OD1 OD2 REMARK 470 ASN B 36 CG OD1 ND2 REMARK 470 LEU B 37 CG CD1 CD2 REMARK 470 LYS B 39 NZ REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 LYS B 80 NZ REMARK 470 GLU B 83 OE1 OE2 REMARK 470 GLU B 84 CD OE1 OE2 REMARK 470 GLU B 110 CD OE1 OE2 REMARK 470 ASN B 131 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 122 O HOH B 186 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 114 -157.96 -81.79 REMARK 500 ALA A 114 -157.96 -89.38 REMARK 500 SER B 22 41.73 39.77 REMARK 500 THR B 34 10.98 -140.26 REMARK 500 ASN B 36 44.97 -106.83 REMARK 500 ASN B 82 -169.57 -129.98 REMARK 500 ASN B 82 -169.57 -110.47 REMARK 500 ALA B 114 -142.11 -88.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 156 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394170 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3H2D A 1 154 UNP Q8EAI7 Q8EAI7_SHEON 1 154 DBREF 3H2D B 1 154 UNP Q8EAI7 Q8EAI7_SHEON 1 154 SEQADV 3H2D GLY A 0 UNP Q8EAI7 EXPRESSION TAG SEQADV 3H2D GLY B 0 UNP Q8EAI7 EXPRESSION TAG SEQRES 1 A 155 GLY MSE ASN VAL ASN PHE ILE ASN PRO PHE LEU GLN SER SEQRES 2 A 155 LEU LEU ASN VAL ILE SER THR MSE ALA SER LEU GLU LEU SEQRES 3 A 155 THR PRO GLY LYS PRO GLN ILE LYS THR ASP ASN LEU ALA SEQRES 4 A 155 LYS GLY ASP VAL SER GLY LEU ILE GLY MSE VAL GLY PRO SEQRES 5 A 155 GLN THR LYS GLY SER LEU SER ILE THR PHE GLU GLN LYS SEQRES 6 A 155 LEU VAL LEU GLN ILE MSE GLN ASN MSE LEU GLY GLU ASN SEQRES 7 A 155 PRO GLY LYS ILE ASN GLU GLU VAL THR ASP LEU VAL GLY SEQRES 8 A 155 GLU ILE THR ASN MSE VAL THR GLY GLY ALA LYS ASN LEU SEQRES 9 A 155 LEU GLY GLN LYS GLY TYR GLU PHE GLU MSE ALA THR PRO SEQRES 10 A 155 MSE VAL VAL SER GLY GLN GLY HIS THR ILE SER HIS LYS SEQRES 11 A 155 ALA ASN GLY THR LYS ILE ILE MSE PRO PHE THR SER SER SEQRES 12 A 155 TYR GLY THR ALA PHE ILE GLU VAL CYS PHE GLU SER SEQRES 1 B 155 GLY MSE ASN VAL ASN PHE ILE ASN PRO PHE LEU GLN SER SEQRES 2 B 155 LEU LEU ASN VAL ILE SER THR MSE ALA SER LEU GLU LEU SEQRES 3 B 155 THR PRO GLY LYS PRO GLN ILE LYS THR ASP ASN LEU ALA SEQRES 4 B 155 LYS GLY ASP VAL SER GLY LEU ILE GLY MSE VAL GLY PRO SEQRES 5 B 155 GLN THR LYS GLY SER LEU SER ILE THR PHE GLU GLN LYS SEQRES 6 B 155 LEU VAL LEU GLN ILE MSE GLN ASN MSE LEU GLY GLU ASN SEQRES 7 B 155 PRO GLY LYS ILE ASN GLU GLU VAL THR ASP LEU VAL GLY SEQRES 8 B 155 GLU ILE THR ASN MSE VAL THR GLY GLY ALA LYS ASN LEU SEQRES 9 B 155 LEU GLY GLN LYS GLY TYR GLU PHE GLU MSE ALA THR PRO SEQRES 10 B 155 MSE VAL VAL SER GLY GLN GLY HIS THR ILE SER HIS LYS SEQRES 11 B 155 ALA ASN GLY THR LYS ILE ILE MSE PRO PHE THR SER SER SEQRES 12 B 155 TYR GLY THR ALA PHE ILE GLU VAL CYS PHE GLU SER MODRES 3H2D MSE A 1 MET SELENOMETHIONINE MODRES 3H2D MSE A 20 MET SELENOMETHIONINE MODRES 3H2D MSE A 48 MET SELENOMETHIONINE MODRES 3H2D MSE A 70 MET SELENOMETHIONINE MODRES 3H2D MSE A 73 MET SELENOMETHIONINE MODRES 3H2D MSE A 95 MET SELENOMETHIONINE MODRES 3H2D MSE A 113 MET SELENOMETHIONINE MODRES 3H2D MSE A 117 MET SELENOMETHIONINE MODRES 3H2D MSE A 137 MET SELENOMETHIONINE MODRES 3H2D MSE B 1 MET SELENOMETHIONINE MODRES 3H2D MSE B 20 MET SELENOMETHIONINE MODRES 3H2D MSE B 48 MET SELENOMETHIONINE MODRES 3H2D MSE B 70 MET SELENOMETHIONINE MODRES 3H2D MSE B 73 MET SELENOMETHIONINE MODRES 3H2D MSE B 95 MET SELENOMETHIONINE MODRES 3H2D MSE B 113 MET SELENOMETHIONINE MODRES 3H2D MSE B 117 MET SELENOMETHIONINE MODRES 3H2D MSE B 137 MET SELENOMETHIONINE HET MSE A 1 6 HET MSE A 20 8 HET MSE A 48 8 HET MSE A 70 8 HET MSE A 73 8 HET MSE A 95 8 HET MSE A 113 16 HET MSE A 117 8 HET MSE A 137 8 HET MSE B 1 16 HET MSE B 20 8 HET MSE B 48 8 HET MSE B 70 8 HET MSE B 73 8 HET MSE B 95 8 HET MSE B 113 8 HET MSE B 117 16 HET MSE B 137 16 HET SO4 B 155 5 HET GOL B 156 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *163(H2 O) HELIX 1 1 MSE A 1 THR A 19 1 19 HELIX 2 2 MSE A 20 GLU A 24 5 5 HELIX 3 3 GLU A 62 GLY A 75 1 14 HELIX 4 4 ASN A 82 LYS A 107 1 26 HELIX 5 5 ASN B 2 PHE B 5 5 4 HELIX 6 6 ILE B 6 THR B 19 1 14 HELIX 7 7 GLU B 62 GLY B 75 1 14 HELIX 8 8 ASN B 82 LYS B 107 1 26 SHEET 1 A12 THR A 26 PRO A 27 0 SHEET 2 A12 LYS A 134 SER A 141 -1 O THR A 140 N THR A 26 SHEET 3 A12 GLY A 144 GLU A 153 -1 O ALA A 146 N PHE A 139 SHEET 4 A12 THR A 53 PHE A 61 -1 N LYS A 54 O GLU A 153 SHEET 5 A12 GLY A 40 GLY A 50 -1 N GLY A 50 O THR A 53 SHEET 6 A12 MSE A 117 HIS A 128 -1 O MSE A 117 N LEU A 45 SHEET 7 A12 MSE B 117 HIS B 128 -1 O SER B 127 N VAL A 118 SHEET 8 A12 GLY B 40 GLY B 50 -1 N LEU B 45 O MSE B 117 SHEET 9 A12 THR B 53 PHE B 61 -1 O THR B 53 N GLY B 50 SHEET 10 A12 GLY B 144 GLU B 153 -1 O GLU B 153 N LYS B 54 SHEET 11 A12 LYS B 134 SER B 141 -1 N ILE B 135 O VAL B 150 SHEET 12 A12 GLN B 31 ILE B 32 -1 N GLN B 31 O ILE B 136 SHEET 1 B 6 GLN A 31 ILE A 32 0 SHEET 2 B 6 LYS A 134 SER A 141 -1 O ILE A 136 N GLN A 31 SHEET 3 B 6 GLY A 144 GLU A 153 -1 O ALA A 146 N PHE A 139 SHEET 4 B 6 THR A 53 PHE A 61 -1 N LYS A 54 O GLU A 153 SHEET 5 B 6 GLY A 40 GLY A 50 -1 N GLY A 50 O THR A 53 SHEET 6 B 6 GLU A 112 MSE A 113 -1 O GLU A 112 N VAL A 49 SHEET 1 C 6 GLU A 112 MSE A 113 0 SHEET 2 C 6 GLY A 40 GLY A 50 -1 N VAL A 49 O GLU A 112 SHEET 3 C 6 MSE A 117 HIS A 128 -1 O MSE A 117 N LEU A 45 SHEET 4 C 6 MSE B 117 HIS B 128 -1 O SER B 127 N VAL A 118 SHEET 5 C 6 GLY B 40 GLY B 50 -1 N LEU B 45 O MSE B 117 SHEET 6 C 6 GLU B 112 MSE B 113 -1 O GLU B 112 N VAL B 49 SHEET 1 D 6 GLU B 112 MSE B 113 0 SHEET 2 D 6 GLY B 40 GLY B 50 -1 N VAL B 49 O GLU B 112 SHEET 3 D 6 THR B 53 PHE B 61 -1 O THR B 53 N GLY B 50 SHEET 4 D 6 GLY B 144 GLU B 153 -1 O GLU B 153 N LYS B 54 SHEET 5 D 6 LYS B 134 SER B 141 -1 N ILE B 135 O VAL B 150 SHEET 6 D 6 THR B 26 PRO B 27 -1 N THR B 26 O THR B 140 SHEET 1 E 6 GLU B 112 MSE B 113 0 SHEET 2 E 6 GLY B 40 GLY B 50 -1 N VAL B 49 O GLU B 112 SHEET 3 E 6 THR B 53 PHE B 61 -1 O THR B 53 N GLY B 50 SHEET 4 E 6 GLY B 144 GLU B 153 -1 O GLU B 153 N LYS B 54 SHEET 5 E 6 LYS B 134 SER B 141 -1 N ILE B 135 O VAL B 150 SHEET 6 E 6 GLN B 31 ILE B 32 -1 N GLN B 31 O ILE B 136 LINK C MSE A 1 N AASN A 2 1555 1555 1.33 LINK C MSE A 1 N BASN A 2 1555 1555 1.33 LINK C THR A 19 N MSE A 20 1555 1555 1.35 LINK C MSE A 20 N ALA A 21 1555 1555 1.33 LINK C GLY A 47 N MSE A 48 1555 1555 1.32 LINK C MSE A 48 N VAL A 49 1555 1555 1.33 LINK C ILE A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N GLN A 71 1555 1555 1.34 LINK C ASN A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N LEU A 74 1555 1555 1.33 LINK C ASN A 94 N MSE A 95 1555 1555 1.32 LINK C MSE A 95 N VAL A 96 1555 1555 1.32 LINK C GLU A 112 N AMSE A 113 1555 1555 1.33 LINK C GLU A 112 N BMSE A 113 1555 1555 1.32 LINK C AMSE A 113 N ALA A 114 1555 1555 1.32 LINK C BMSE A 113 N ALA A 114 1555 1555 1.33 LINK C PRO A 116 N MSE A 117 1555 1555 1.32 LINK C MSE A 117 N VAL A 118 1555 1555 1.33 LINK C ILE A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N PRO A 138 1555 1555 1.34 LINK C GLY B 0 N AMSE B 1 1555 1555 1.32 LINK C GLY B 0 N BMSE B 1 1555 1555 1.33 LINK C AMSE B 1 N ASN B 2 1555 1555 1.33 LINK C BMSE B 1 N ASN B 2 1555 1555 1.33 LINK C THR B 19 N MSE B 20 1555 1555 1.33 LINK C MSE B 20 N ALA B 21 1555 1555 1.33 LINK C GLY B 47 N MSE B 48 1555 1555 1.34 LINK C MSE B 48 N VAL B 49 1555 1555 1.33 LINK C ILE B 69 N MSE B 70 1555 1555 1.34 LINK C MSE B 70 N GLN B 71 1555 1555 1.33 LINK C ASN B 72 N MSE B 73 1555 1555 1.32 LINK C MSE B 73 N LEU B 74 1555 1555 1.33 LINK C ASN B 94 N MSE B 95 1555 1555 1.34 LINK C MSE B 95 N VAL B 96 1555 1555 1.34 LINK C GLU B 112 N MSE B 113 1555 1555 1.32 LINK C MSE B 113 N ALA B 114 1555 1555 1.33 LINK C PRO B 116 N AMSE B 117 1555 1555 1.32 LINK C PRO B 116 N BMSE B 117 1555 1555 1.33 LINK C AMSE B 117 N VAL B 118 1555 1555 1.33 LINK C BMSE B 117 N VAL B 118 1555 1555 1.35 LINK C ILE B 136 N AMSE B 137 1555 1555 1.33 LINK C ILE B 136 N BMSE B 137 1555 1555 1.32 LINK C AMSE B 137 N PRO B 138 1555 1555 1.34 LINK C BMSE B 137 N PRO B 138 1555 1555 1.33 SITE 1 AC1 6 ASN B 7 GLN B 11 LYS B 107 GOL B 156 SITE 2 AC1 6 HOH B 203 HOH B 221 SITE 1 AC2 6 ASN B 4 PHE B 5 GLU B 62 LYS B 107 SITE 2 AC2 6 THR B 145 SO4 B 155 CRYST1 58.327 71.024 74.039 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013506 0.00000 HETATM 1 N MSE A 1 38.478 24.401 0.296 1.00 49.52 N HETATM 2 CA MSE A 1 37.950 24.062 1.630 1.00 50.99 C HETATM 3 C MSE A 1 36.471 23.646 1.519 1.00 51.61 C HETATM 4 O MSE A 1 36.087 22.590 2.018 1.00 53.60 O HETATM 5 CB MSE A 1 38.120 25.246 2.611 1.00 51.08 C HETATM 6 CG MSE A 1 39.451 25.280 3.401 1.00 47.54 C