HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-APR-09 3H35 TITLE STRUCTURE OF THE UNCHARACTERIZED PROTEIN ABO_0056 FROM THE TITLE 2 HYDROCARBON-DEGRADING MARINE BACTERIUM ALCANIVORAX BORKUMENSIS SK2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ABO_0056; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCANIVORAX BORKUMENSIS; SOURCE 3 ORGANISM_TAXID: 393595; SOURCE 4 STRAIN: SK2; SOURCE 5 GENE: ABO_0056; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MODIFIED BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED P11 KEYWDS ALCANIVORAX BORKUMENSIS, UBIQUITOUS HYDROCARBON DEGRADING BACTERIUM, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.EVDOKIMOVA,O.KAGAN,A.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3H35 1 REMARK REVDAT 2 13-JUL-11 3H35 1 VERSN REVDAT 1 12-MAY-09 3H35 0 JRNL AUTH M.E.CUFF,E.EVDOKIMOVA,O.KAGAN,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL STRUCTURE OF THE UNCHARACTERIZED PROTEIN ABO_0056 FROM THE JRNL TITL 2 HYDROCARBON-DEGRADING MARINE BACTERIUM ALCANIVORAX JRNL TITL 3 BORKUMENSIS SK2. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1985 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.367 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3469 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2374 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4696 ; 1.501 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5734 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 5.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;33.285 ;22.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;14.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3923 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 764 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 881 ; 0.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3436 ; 1.501 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1317 ; 2.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1260 ; 4.122 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5946 36.6810 13.0583 REMARK 3 T TENSOR REMARK 3 T11: 0.0248 T22: 0.0519 REMARK 3 T33: 0.0593 T12: -0.0258 REMARK 3 T13: 0.0076 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 1.3832 L22: 0.7350 REMARK 3 L33: 2.3791 L12: -0.0451 REMARK 3 L13: -0.6440 L23: 0.0189 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0748 S13: -0.1321 REMARK 3 S21: -0.0457 S22: -0.0268 S23: 0.0633 REMARK 3 S31: 0.0721 S32: -0.0603 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7685 57.4043 15.6148 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0221 REMARK 3 T33: 0.0278 T12: -0.0069 REMARK 3 T13: 0.0288 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.3178 L22: 1.7201 REMARK 3 L33: 1.6608 L12: 0.6136 REMARK 3 L13: 0.2975 L23: 0.2928 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.1526 S13: 0.0838 REMARK 3 S21: -0.1262 S22: 0.0030 S23: -0.0162 REMARK 3 S31: -0.2395 S32: 0.1152 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 34 C 175 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7633 43.5264 32.2089 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0483 REMARK 3 T33: 0.0356 T12: -0.0113 REMARK 3 T13: -0.0129 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.6064 L22: 1.6116 REMARK 3 L33: 1.8806 L12: -0.2956 REMARK 3 L13: 0.2351 L23: 0.6544 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: -0.0565 S13: -0.0892 REMARK 3 S21: 0.1942 S22: 0.0562 S23: -0.0685 REMARK 3 S31: 0.0397 S32: 0.0979 S33: -0.1044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3H35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940,0.97953 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29280 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M K/NA TARTRATE*4H2O, 18% PEG3340, REMARK 280 PH 6, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.65667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.82833 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.82833 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.65667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNKNOWN BUT LIKELY THE TRIMER IN ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 HIS A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 GLU A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 GLN A 23 REMARK 465 ASN A 24 REMARK 465 LEU A 25 REMARK 465 HIS A 26 REMARK 465 GLN A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 GLY A 30 REMARK 465 THR A 175 REMARK 465 PRO A 176 REMARK 465 ALA A 177 REMARK 465 ASP A 178 REMARK 465 ILE A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 GLY A 182 REMARK 465 HIS A 183 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 LEU B 2 REMARK 465 HIS B 3 REMARK 465 GLY B 4 REMARK 465 LEU B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 7 REMARK 465 ARG B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 LEU B 18 REMARK 465 GLU B 19 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 PRO B 22 REMARK 465 GLN B 23 REMARK 465 ASN B 24 REMARK 465 LEU B 25 REMARK 465 HIS B 26 REMARK 465 GLN B 27 REMARK 465 LEU B 28 REMARK 465 LEU B 29 REMARK 465 GLY B 30 REMARK 465 VAL B 31 REMARK 465 SER B 32 REMARK 465 ILE B 33 REMARK 465 GLU B 34 REMARK 465 GLN B 35 REMARK 465 THR B 175 REMARK 465 PRO B 176 REMARK 465 ALA B 177 REMARK 465 ASP B 178 REMARK 465 ILE B 179 REMARK 465 GLU B 180 REMARK 465 GLU B 181 REMARK 465 GLY B 182 REMARK 465 HIS B 183 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MSE C 1 REMARK 465 LEU C 2 REMARK 465 HIS C 3 REMARK 465 GLY C 4 REMARK 465 LEU C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 ARG C 8 REMARK 465 LEU C 9 REMARK 465 GLU C 10 REMARK 465 ALA C 11 REMARK 465 LEU C 12 REMARK 465 HIS C 13 REMARK 465 HIS C 14 REMARK 465 PRO C 15 REMARK 465 GLY C 16 REMARK 465 GLU C 17 REMARK 465 LEU C 18 REMARK 465 GLU C 19 REMARK 465 GLY C 20 REMARK 465 SER C 21 REMARK 465 PRO C 22 REMARK 465 GLN C 23 REMARK 465 ASN C 24 REMARK 465 LEU C 25 REMARK 465 HIS C 26 REMARK 465 GLN C 27 REMARK 465 LEU C 28 REMARK 465 LEU C 29 REMARK 465 GLY C 30 REMARK 465 VAL C 31 REMARK 465 SER C 32 REMARK 465 ILE C 33 REMARK 465 PRO C 176 REMARK 465 ALA C 177 REMARK 465 ASP C 178 REMARK 465 ILE C 179 REMARK 465 GLU C 180 REMARK 465 GLU C 181 REMARK 465 GLY C 182 REMARK 465 HIS C 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU C 134 O HOH A 260 5665 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 88 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU C 153 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 81 75.78 -166.38 REMARK 500 PHE A 122 137.72 -38.23 REMARK 500 LEU A 150 79.97 -118.29 REMARK 500 LEU A 153 133.34 -38.55 REMARK 500 TYR B 87 143.56 -170.34 REMARK 500 SER C 81 72.66 -153.74 REMARK 500 TYR C 87 143.87 -175.69 REMARK 500 TYR C 87 144.16 -175.69 REMARK 500 PHE C 122 133.88 -39.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT C 184 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40013 RELATED DB: TARGETDB DBREF 3H35 A 1 181 UNP Q0VTF8 Q0VTF8_ALCBS 1 181 DBREF 3H35 B 1 181 UNP Q0VTF8 Q0VTF8_ALCBS 1 181 DBREF 3H35 C 1 181 UNP Q0VTF8 Q0VTF8_ALCBS 1 181 SEQADV 3H35 GLY A -1 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 SER A 0 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 GLY A 182 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 HIS A 183 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 GLY B -1 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 SER B 0 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 GLY B 182 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 HIS B 183 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 GLY C -1 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 SER C 0 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 GLY C 182 UNP Q0VTF8 EXPRESSION TAG SEQADV 3H35 HIS C 183 UNP Q0VTF8 EXPRESSION TAG SEQRES 1 A 185 GLY SER MSE LEU HIS GLY LEU LYS GLN ARG LEU GLU ALA SEQRES 2 A 185 LEU HIS HIS PRO GLY GLU LEU GLU GLY SER PRO GLN ASN SEQRES 3 A 185 LEU HIS GLN LEU LEU GLY VAL SER ILE GLU GLN SER VAL SEQRES 4 A 185 PRO GLN ALA GLN THR MSE LEU VAL GLU ARG HIS LEU ALA SEQRES 5 A 185 SER LEU THR GLY ASP GLU ALA ARG LEU LEU ALA ALA LEU SEQRES 6 A 185 SER ASP GLY SER ALA PHE ALA LEU LEU THR LEU TYR SER SEQRES 7 A 185 GLY SER ARG PHE SER ARG GLY GLU VAL LEU TYR ARG TYR SEQRES 8 A 185 SER ASN ALA GLY ARG ALA ALA GLY ILE GLN CYS ASN ASP SEQRES 9 A 185 PHE ILE ALA LEU TYR LEU ASN HIS LEU PHE ALA GLN GLY SEQRES 10 A 185 LEU VAL ILE ALA SER ASP PHE THR GLU SER LEU ARG THR SEQRES 11 A 185 ASP TYR GLU LEU CYS GLU GLY ASP SER ASP PHE ARG LYS SEQRES 12 A 185 ALA GLN ALA GLU LEU GLN ILE HIS LEU PRO LYS LEU SER SEQRES 13 A 185 ILE ARG ARG GLU THR LEU ARG ILE SER PRO LEU GLY ARG SEQRES 14 A 185 GLN LEU TRP THR LEU MSE THR THR PRO ALA ASP ILE GLU SEQRES 15 A 185 GLU GLY HIS SEQRES 1 B 185 GLY SER MSE LEU HIS GLY LEU LYS GLN ARG LEU GLU ALA SEQRES 2 B 185 LEU HIS HIS PRO GLY GLU LEU GLU GLY SER PRO GLN ASN SEQRES 3 B 185 LEU HIS GLN LEU LEU GLY VAL SER ILE GLU GLN SER VAL SEQRES 4 B 185 PRO GLN ALA GLN THR MSE LEU VAL GLU ARG HIS LEU ALA SEQRES 5 B 185 SER LEU THR GLY ASP GLU ALA ARG LEU LEU ALA ALA LEU SEQRES 6 B 185 SER ASP GLY SER ALA PHE ALA LEU LEU THR LEU TYR SER SEQRES 7 B 185 GLY SER ARG PHE SER ARG GLY GLU VAL LEU TYR ARG TYR SEQRES 8 B 185 SER ASN ALA GLY ARG ALA ALA GLY ILE GLN CYS ASN ASP SEQRES 9 B 185 PHE ILE ALA LEU TYR LEU ASN HIS LEU PHE ALA GLN GLY SEQRES 10 B 185 LEU VAL ILE ALA SER ASP PHE THR GLU SER LEU ARG THR SEQRES 11 B 185 ASP TYR GLU LEU CYS GLU GLY ASP SER ASP PHE ARG LYS SEQRES 12 B 185 ALA GLN ALA GLU LEU GLN ILE HIS LEU PRO LYS LEU SER SEQRES 13 B 185 ILE ARG ARG GLU THR LEU ARG ILE SER PRO LEU GLY ARG SEQRES 14 B 185 GLN LEU TRP THR LEU MSE THR THR PRO ALA ASP ILE GLU SEQRES 15 B 185 GLU GLY HIS SEQRES 1 C 185 GLY SER MSE LEU HIS GLY LEU LYS GLN ARG LEU GLU ALA SEQRES 2 C 185 LEU HIS HIS PRO GLY GLU LEU GLU GLY SER PRO GLN ASN SEQRES 3 C 185 LEU HIS GLN LEU LEU GLY VAL SER ILE GLU GLN SER VAL SEQRES 4 C 185 PRO GLN ALA GLN THR MSE LEU VAL GLU ARG HIS LEU ALA SEQRES 5 C 185 SER LEU THR GLY ASP GLU ALA ARG LEU LEU ALA ALA LEU SEQRES 6 C 185 SER ASP GLY SER ALA PHE ALA LEU LEU THR LEU TYR SER SEQRES 7 C 185 GLY SER ARG PHE SER ARG GLY GLU VAL LEU TYR ARG TYR SEQRES 8 C 185 SER ASN ALA GLY ARG ALA ALA GLY ILE GLN CYS ASN ASP SEQRES 9 C 185 PHE ILE ALA LEU TYR LEU ASN HIS LEU PHE ALA GLN GLY SEQRES 10 C 185 LEU VAL ILE ALA SER ASP PHE THR GLU SER LEU ARG THR SEQRES 11 C 185 ASP TYR GLU LEU CYS GLU GLY ASP SER ASP PHE ARG LYS SEQRES 12 C 185 ALA GLN ALA GLU LEU GLN ILE HIS LEU PRO LYS LEU SER SEQRES 13 C 185 ILE ARG ARG GLU THR LEU ARG ILE SER PRO LEU GLY ARG SEQRES 14 C 185 GLN LEU TRP THR LEU MSE THR THR PRO ALA ASP ILE GLU SEQRES 15 C 185 GLU GLY HIS MODRES 3H35 MSE A 43 MET SELENOMETHIONINE MODRES 3H35 MSE A 173 MET SELENOMETHIONINE MODRES 3H35 MSE B 43 MET SELENOMETHIONINE MODRES 3H35 MSE B 173 MET SELENOMETHIONINE MODRES 3H35 MSE C 43 MET SELENOMETHIONINE MODRES 3H35 MSE C 173 MET SELENOMETHIONINE HET MSE A 43 16 HET MSE A 173 8 HET MSE B 43 16 HET MSE B 173 8 HET MSE C 43 8 HET MSE C 173 8 HET EDO A 184 4 HET SRT C 184 10 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SRT S,R MESO-TARTARIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 EDO C2 H6 O2 FORMUL 5 SRT C4 H6 O6 FORMUL 6 HOH *261(H2 O) HELIX 1 1 GLN A 39 LEU A 49 1 11 HELIX 2 2 THR A 53 SER A 64 1 12 HELIX 3 3 ASN A 91 GLY A 97 1 7 HELIX 4 4 CYS A 100 ASP A 102 5 3 HELIX 5 5 PHE A 103 GLN A 114 1 12 HELIX 6 6 THR A 123 SER A 125 5 3 HELIX 7 7 LEU A 126 ASP A 136 1 11 HELIX 8 8 ASP A 136 LEU A 150 1 15 HELIX 9 9 SER A 163 THR A 174 1 12 HELIX 10 10 PRO B 38 ALA B 50 1 13 HELIX 11 11 THR B 53 ASP B 65 1 13 HELIX 12 12 CYS B 100 ASP B 102 5 3 HELIX 13 13 PHE B 103 GLN B 114 1 12 HELIX 14 14 THR B 123 SER B 125 5 3 HELIX 15 15 LEU B 126 ASP B 136 1 11 HELIX 16 16 ASP B 136 LEU B 150 1 15 HELIX 17 17 SER B 163 THR B 174 1 12 HELIX 18 18 SER C 36 ALA C 50 1 15 HELIX 19 19 THR C 53 ASP C 65 1 13 HELIX 20 20 ALA C 92 GLY C 97 5 6 HELIX 21 21 CYS C 100 ASP C 102 5 3 HELIX 22 22 PHE C 103 GLN C 114 1 12 HELIX 23 23 THR C 123 SER C 125 5 3 HELIX 24 24 LEU C 126 ASP C 136 1 11 HELIX 25 25 ASP C 136 LEU C 150 1 15 HELIX 26 26 SER C 163 THR C 174 1 12 SHEET 1 A 4 VAL A 85 TYR A 89 0 SHEET 2 A 4 PHE A 69 TYR A 75 -1 N LEU A 74 O LEU A 86 SHEET 3 A 4 SER A 154 ILE A 162 -1 O GLU A 158 N LEU A 71 SHEET 4 A 4 VAL A 117 ASP A 121 -1 N ILE A 118 O ARG A 161 SHEET 1 B 4 VAL B 85 SER B 90 0 SHEET 2 B 4 PHE B 69 TYR B 75 -1 N LEU B 74 O LEU B 86 SHEET 3 B 4 SER B 154 ILE B 162 -1 O SER B 154 N TYR B 75 SHEET 4 B 4 VAL B 117 ASP B 121 -1 N SER B 120 O THR B 159 SHEET 1 C 4 VAL C 85 TYR C 89 0 SHEET 2 C 4 PHE C 69 TYR C 75 -1 N LEU C 74 O LEU C 86 SHEET 3 C 4 SER C 154 ILE C 162 -1 O GLU C 158 N LEU C 71 SHEET 4 C 4 VAL C 117 SER C 120 -1 N SER C 120 O THR C 159 LINK C THR A 42 N AMSE A 43 1555 1555 1.33 LINK C THR A 42 N BMSE A 43 1555 1555 1.33 LINK C AMSE A 43 N LEU A 44 1555 1555 1.33 LINK C BMSE A 43 N LEU A 44 1555 1555 1.33 LINK C LEU A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N THR A 174 1555 1555 1.33 LINK C THR B 42 N AMSE B 43 1555 1555 1.34 LINK C THR B 42 N BMSE B 43 1555 1555 1.33 LINK C AMSE B 43 N LEU B 44 1555 1555 1.33 LINK C BMSE B 43 N LEU B 44 1555 1555 1.33 LINK C LEU B 172 N MSE B 173 1555 1555 1.32 LINK C MSE B 173 N THR B 174 1555 1555 1.32 LINK C THR C 42 N MSE C 43 1555 1555 1.31 LINK C MSE C 43 N LEU C 44 1555 1555 1.33 LINK C LEU C 172 N MSE C 173 1555 1555 1.32 LINK C MSE C 173 N THR C 174 1555 1555 1.34 SITE 1 AC1 5 VAL A 85 ARG A 88 ASN A 109 PHE A 112 SITE 2 AC1 5 HOH A 211 SITE 1 AC2 10 GLY A 54 ARG A 58 HOH A 197 PHE B 80 SITE 2 AC2 10 ARG C 79 ARG C 82 ILE C 155 HOH C 227 SITE 3 AC2 10 HOH C 248 HOH C 252 CRYST1 82.967 82.967 131.485 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012053 0.006959 0.000000 0.00000 SCALE2 0.000000 0.013918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007605 0.00000