HEADER RNA BINDING PROTEIN 16-APR-09 3H3D TITLE DROSOPHILA PUMILIO RNA BINDING DOMAIN (PUF DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL PROTEIN PUMILIO; COMPND 3 CHAIN: X, Y; COMPND 4 FRAGMENT: PUF DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: PUMILIO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS PUMILIO, PUF, RNA BINDING DOMAIN, ALTERNATIVE SPLICING, CYTOPLASM, KEYWDS 2 DEVELOPMENTAL PROTEIN, PHOSPHOPROTEIN, REPRESSOR, RNA-BINDING, KEYWDS 3 TRANSLATION REGULATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.A.EDWARDS,A.K.AGGARWAL,R.P.WHARTON REVDAT 3 20-MAR-24 3H3D 1 REMARK REVDAT 2 06-NOV-19 3H3D 1 JRNL SEQADV REVDAT 1 28-APR-09 3H3D 0 JRNL AUTH T.A.EDWARDS,S.E.PYLE,R.P.WHARTON,A.K.AGGARWAL JRNL TITL STRUCTURE OF PUMILIO REVEALS SIMILARITY BETWEEN RNA AND JRNL TITL 2 PEPTIDE BINDING MOTIFS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 105 281 2001 JRNL REFN ISSN 0092-8674 JRNL PMID 11336677 JRNL DOI 10.1016/S0092-8674(01)00318-X REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 48553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5009 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.274 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.394 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5097 ; 0.033 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6883 ; 2.610 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 625 ; 7.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;44.559 ;25.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 945 ;19.702 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;22.685 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 783 ; 0.176 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3821 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2650 ; 0.267 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3453 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 279 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3265 ; 1.634 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5054 ; 2.443 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2084 ; 4.016 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1828 ; 5.908 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-00; 01-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X25; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 1.009, 1.0084, 0.990 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; SI 111 CHANNEL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49178 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M AMMONIUM SULFATE, 100MM HEPES, 4% REMARK 280 DMSO, 2MM DTT, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.63500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 114.63500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 114.63500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X -2 REMARK 465 SER X -1 REMARK 465 HIS X 0 REMARK 465 ARG X 314 REMARK 465 LYS X 315 REMARK 465 ASN X 316 REMARK 465 MET X 317 REMARK 465 ALA X 318 REMARK 465 ALA X 319 REMARK 465 LEU X 320 REMARK 465 GLY Y 312 REMARK 465 SER Y 313 REMARK 465 ARG Y 628 REMARK 465 LYS Y 629 REMARK 465 ASN Y 630 REMARK 465 MET Y 631 REMARK 465 ALA Y 632 REMARK 465 ALA Y 633 REMARK 465 LEU Y 634 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU X 43 CG CD OE1 OE2 REMARK 470 ARG X 44 CG CD NE CZ NH1 NH2 REMARK 470 ARG X 263 CG CD NE CZ NH1 NH2 REMARK 470 HIS Y 314 CG ND1 CD2 CE1 NE2 REMARK 470 ARG Y 333 CG CD NE CZ NH1 NH2 REMARK 470 GLU Y 398 CG CD OE1 OE2 REMARK 470 GLU Y 537 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU Y 616 N THR Y 618 2.00 REMARK 500 O HOH X 880 O HOH X 981 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL X 97 CB VAL X 97 CG2 -0.154 REMARK 500 CYS X 107 CA CYS X 107 CB 0.339 REMARK 500 CYS X 107 CB CYS X 107 SG 0.619 REMARK 500 GLN X 111 CG GLN X 111 CD 0.246 REMARK 500 GLU X 115 CB GLU X 115 CG -0.116 REMARK 500 CYS X 136 CB CYS X 136 SG -0.209 REMARK 500 CYS X 152 CB CYS X 152 SG 0.207 REMARK 500 GLN X 183 CB GLN X 183 CG 0.250 REMARK 500 GLN X 183 CG GLN X 183 CD 0.219 REMARK 500 GLN X 183 CD GLN X 183 NE2 0.334 REMARK 500 GLU X 206 CB GLU X 206 CG 0.125 REMARK 500 GLU X 206 CG GLU X 206 CD 0.134 REMARK 500 CYS X 274 CB CYS X 274 SG 0.174 REMARK 500 TYR Y 376 CE2 TYR Y 376 CD2 0.130 REMARK 500 CYS Y 421 N CYS Y 421 CA 0.240 REMARK 500 CYS Y 421 CA CYS Y 421 CB 0.315 REMARK 500 CYS Y 421 CB CYS Y 421 SG 0.206 REMARK 500 CYS Y 466 CB CYS Y 466 SG 0.309 REMARK 500 CYS Y 503 CB CYS Y 503 SG 0.213 REMARK 500 CYS Y 588 CB CYS Y 588 SG 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 67 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LYS X 76 CD - CE - NZ ANGL. DEV. = -15.0 DEGREES REMARK 500 GLN X 99 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU X 100 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 CYS X 107 N - CA - CB ANGL. DEV. = 19.9 DEGREES REMARK 500 CYS X 107 CA - CB - SG ANGL. DEV. = 35.0 DEGREES REMARK 500 CYS X 136 CA - CB - SG ANGL. DEV. = -20.2 DEGREES REMARK 500 VAL X 145 CG1 - CB - CG2 ANGL. DEV. = 13.1 DEGREES REMARK 500 GLN X 183 CG - CD - OE1 ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG X 184 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 GLY X 214 C - N - CA ANGL. DEV. = -17.1 DEGREES REMARK 500 GLY Y 420 CA - C - O ANGL. DEV. = -16.5 DEGREES REMARK 500 CYS Y 421 N - CA - CB ANGL. DEV. = 29.2 DEGREES REMARK 500 CYS Y 421 CA - CB - SG ANGL. DEV. = 35.3 DEGREES REMARK 500 CYS Y 421 N - CA - C ANGL. DEV. = -29.3 DEGREES REMARK 500 CYS Y 466 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 CYS Y 503 CB - CA - C ANGL. DEV. = 8.2 DEGREES REMARK 500 THR Y 508 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 CYS Y 588 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 100 -70.08 89.28 REMARK 500 ASP X 130 119.97 -36.82 REMARK 500 VAL X 153 134.66 81.29 REMARK 500 ARG X 180 -59.69 105.55 REMARK 500 GLU X 206 -53.92 140.07 REMARK 500 HIS X 224 -17.79 -146.02 REMARK 500 CYS X 274 0.19 -49.93 REMARK 500 PHE X 276 147.05 90.20 REMARK 500 LEU X 281 -137.21 -84.74 REMARK 500 HIS X 282 -97.07 8.14 REMARK 500 VAL X 283 -72.98 -46.78 REMARK 500 SER X 301 -164.33 -112.52 REMARK 500 GLU X 302 -72.82 -156.21 REMARK 500 LEU X 309 22.07 -68.33 REMARK 500 LYS X 312 107.82 32.62 REMARK 500 MET Y 315 117.67 61.42 REMARK 500 ASN Y 324 34.77 -73.93 REMARK 500 GLN Y 325 42.66 39.45 REMARK 500 ASN Y 329 49.24 -147.46 REMARK 500 GLU Y 363 -74.67 -52.49 REMARK 500 LYS Y 364 -53.98 -25.67 REMARK 500 GLU Y 393 -77.54 -63.06 REMARK 500 PHE Y 394 -163.08 -72.37 REMARK 500 SER Y 430 -11.32 -140.46 REMARK 500 LEU Y 500 -52.81 95.29 REMARK 500 ARG Y 552 -106.15 36.17 REMARK 500 ALA Y 564 -50.54 127.02 REMARK 500 CYS Y 588 177.98 -57.19 REMARK 500 THR Y 589 -53.94 71.46 REMARK 500 PHE Y 590 153.21 20.77 REMARK 500 ASN Y 591 -142.05 -104.73 REMARK 500 HIS Y 596 -72.50 86.91 REMARK 500 SER Y 615 -148.84 -89.49 REMARK 500 GLU Y 616 170.30 169.25 REMARK 500 PRO Y 617 -6.67 -13.36 REMARK 500 MET Y 624 2.28 -66.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU X 309 MET X 310 143.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE SEQUENCE IS GENBANK DATABASE, CAA44474. REMARK 999 SEE REFERENCE 1 IN UNP DATABASE P25822. DBREF 3H3D X 2 320 UNP P25822 PUM_DROME 1093 1411 DBREF 3H3D Y 316 634 UNP P25822 PUM_DROME 1093 1411 SEQADV 3H3D GLY X -2 UNP P25822 EXPRESSION TAG SEQADV 3H3D SER X -1 UNP P25822 EXPRESSION TAG SEQADV 3H3D HIS X 0 UNP P25822 EXPRESSION TAG SEQADV 3H3D MET X 1 UNP P25822 EXPRESSION TAG SEQADV 3H3D LYS X 315 UNP P25822 PRO 1406 SEE REMARK 999 SEQADV 3H3D ASN X 316 UNP P25822 HIS 1407 SEE REMARK 999 SEQADV 3H3D GLY Y 312 UNP P25822 EXPRESSION TAG SEQADV 3H3D SER Y 313 UNP P25822 EXPRESSION TAG SEQADV 3H3D HIS Y 314 UNP P25822 EXPRESSION TAG SEQADV 3H3D MET Y 315 UNP P25822 EXPRESSION TAG SEQADV 3H3D LYS Y 629 UNP P25822 PRO 1406 SEE REMARK 999 SEQADV 3H3D ASN Y 630 UNP P25822 HIS 1407 SEE REMARK 999 SEQRES 1 X 323 GLY SER HIS MET SER ARG LEU LEU GLU ASP PHE ARG ASN SEQRES 2 X 323 GLN ARG TYR PRO ASN LEU GLN LEU ARG ASP LEU ALA ASN SEQRES 3 X 323 HIS ILE VAL GLU PHE SER GLN ASP GLN HIS GLY SER ARG SEQRES 4 X 323 PHE ILE GLN GLN LYS LEU GLU ARG ALA THR ALA ALA GLU SEQRES 5 X 323 LYS GLN MET VAL PHE SER GLU ILE LEU ALA ALA ALA TYR SEQRES 6 X 323 SER LEU MET THR ASP VAL PHE GLY ASN TYR VAL ILE GLN SEQRES 7 X 323 LYS PHE PHE GLU PHE GLY THR PRO GLU GLN LYS ASN THR SEQRES 8 X 323 LEU GLY MET GLN VAL LYS GLY HIS VAL LEU GLN LEU ALA SEQRES 9 X 323 LEU GLN MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU SEQRES 10 X 323 GLU SER ILE SER PRO GLU GLN GLN GLN GLU ILE VAL HIS SEQRES 11 X 323 GLU LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN SEQRES 12 X 323 ASN GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL SEQRES 13 X 323 ASP PRO VAL ALA LEU GLN PHE ILE ILE ASN ALA PHE LYS SEQRES 14 X 323 GLY GLN VAL TYR SER LEU SER THR HIS PRO TYR GLY CYS SEQRES 15 X 323 ARG VAL ILE GLN ARG ILE LEU GLU HIS CYS THR ALA GLU SEQRES 16 X 323 GLN THR THR PRO ILE LEU ASP GLU LEU HIS GLU HIS THR SEQRES 17 X 323 GLU GLN LEU ILE GLN ASP GLN TYR GLY ASN TYR VAL ILE SEQRES 18 X 323 GLN HIS VAL LEU GLU HIS GLY LYS GLN GLU ASP LYS SER SEQRES 19 X 323 ILE LEU ILE ASN SER VAL ARG GLY LYS VAL LEU VAL LEU SEQRES 20 X 323 SER GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS SEQRES 21 X 323 VAL THR HIS ALA THR ARG GLY GLU ARG THR GLY LEU ILE SEQRES 22 X 323 ASP GLU VAL CYS THR PHE ASN ASP ASN ALA LEU HIS VAL SEQRES 23 X 323 MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN LYS SEQRES 24 X 323 MET ILE ASP VAL SER GLU PRO THR GLN LEU LYS LYS LEU SEQRES 25 X 323 MET THR LYS ILE ARG LYS ASN MET ALA ALA LEU SEQRES 1 Y 323 GLY SER HIS MET SER ARG LEU LEU GLU ASP PHE ARG ASN SEQRES 2 Y 323 GLN ARG TYR PRO ASN LEU GLN LEU ARG ASP LEU ALA ASN SEQRES 3 Y 323 HIS ILE VAL GLU PHE SER GLN ASP GLN HIS GLY SER ARG SEQRES 4 Y 323 PHE ILE GLN GLN LYS LEU GLU ARG ALA THR ALA ALA GLU SEQRES 5 Y 323 LYS GLN MET VAL PHE SER GLU ILE LEU ALA ALA ALA TYR SEQRES 6 Y 323 SER LEU MET THR ASP VAL PHE GLY ASN TYR VAL ILE GLN SEQRES 7 Y 323 LYS PHE PHE GLU PHE GLY THR PRO GLU GLN LYS ASN THR SEQRES 8 Y 323 LEU GLY MET GLN VAL LYS GLY HIS VAL LEU GLN LEU ALA SEQRES 9 Y 323 LEU GLN MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU SEQRES 10 Y 323 GLU SER ILE SER PRO GLU GLN GLN GLN GLU ILE VAL HIS SEQRES 11 Y 323 GLU LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN SEQRES 12 Y 323 ASN GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL SEQRES 13 Y 323 ASP PRO VAL ALA LEU GLN PHE ILE ILE ASN ALA PHE LYS SEQRES 14 Y 323 GLY GLN VAL TYR SER LEU SER THR HIS PRO TYR GLY CYS SEQRES 15 Y 323 ARG VAL ILE GLN ARG ILE LEU GLU HIS CYS THR ALA GLU SEQRES 16 Y 323 GLN THR THR PRO ILE LEU ASP GLU LEU HIS GLU HIS THR SEQRES 17 Y 323 GLU GLN LEU ILE GLN ASP GLN TYR GLY ASN TYR VAL ILE SEQRES 18 Y 323 GLN HIS VAL LEU GLU HIS GLY LYS GLN GLU ASP LYS SER SEQRES 19 Y 323 ILE LEU ILE ASN SER VAL ARG GLY LYS VAL LEU VAL LEU SEQRES 20 Y 323 SER GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS SEQRES 21 Y 323 VAL THR HIS ALA THR ARG GLY GLU ARG THR GLY LEU ILE SEQRES 22 Y 323 ASP GLU VAL CYS THR PHE ASN ASP ASN ALA LEU HIS VAL SEQRES 23 Y 323 MET MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN LYS SEQRES 24 Y 323 MET ILE ASP VAL SER GLU PRO THR GLN LEU LYS LYS LEU SEQRES 25 Y 323 MET THR LYS ILE ARG LYS ASN MET ALA ALA LEU FORMUL 3 HOH *335(H2 O) HELIX 1 1 SER X 2 ASN X 10 1 9 HELIX 2 2 GLN X 17 ALA X 22 5 6 HELIX 3 3 HIS X 24 GLN X 30 1 7 HELIX 4 4 ASP X 31 GLU X 43 1 13 HELIX 5 5 THR X 46 ALA X 60 1 15 HELIX 6 6 ALA X 60 THR X 66 1 7 HELIX 7 7 PHE X 69 GLY X 81 1 13 HELIX 8 8 THR X 82 HIS X 96 1 15 HELIX 9 9 VAL X 97 LEU X 102 1 6 HELIX 10 10 GLN X 103 GLU X 115 1 13 HELIX 11 11 SER X 118 HIS X 127 1 10 HELIX 12 12 GLU X 128 ASP X 130 5 3 HELIX 13 13 HIS X 132 LYS X 138 1 7 HELIX 14 14 ASN X 141 CYS X 152 1 12 HELIX 15 15 ASP X 154 ALA X 157 5 4 HELIX 16 16 LEU X 158 LYS X 166 1 9 HELIX 17 17 GLN X 168 THR X 174 1 7 HELIX 18 18 TYR X 177 CYS X 189 1 13 HELIX 19 19 THR X 194 HIS X 204 1 11 HELIX 20 20 GLY X 214 GLY X 225 1 12 HELIX 21 21 LYS X 226 ARG X 238 1 13 HELIX 22 22 LYS X 240 GLN X 246 1 7 HELIX 23 23 PHE X 249 ALA X 261 1 13 HELIX 24 24 THR X 262 CYS X 274 1 13 HELIX 25 25 LEU X 281 ASP X 287 1 7 HELIX 26 26 TYR X 289 VAL X 300 1 12 HELIX 27 27 GLU X 302 LEU X 309 1 8 HELIX 28 28 SER Y 316 ASN Y 324 1 9 HELIX 29 29 GLN Y 331 ALA Y 336 5 6 HELIX 30 30 HIS Y 338 GLN Y 344 1 7 HELIX 31 31 ASP Y 345 ARG Y 358 1 14 HELIX 32 32 THR Y 360 ALA Y 374 1 15 HELIX 33 33 ALA Y 374 THR Y 380 1 7 HELIX 34 34 GLY Y 384 PHE Y 394 1 11 HELIX 35 35 THR Y 396 GLY Y 409 1 14 HELIX 36 36 HIS Y 410 LEU Y 416 1 7 HELIX 37 37 GLN Y 417 GLU Y 429 1 13 HELIX 38 38 SER Y 432 GLU Y 442 1 11 HELIX 39 39 HIS Y 446 LYS Y 452 1 7 HELIX 40 40 ASN Y 455 VAL Y 467 1 13 HELIX 41 41 ASP Y 468 ALA Y 471 5 4 HELIX 42 42 LEU Y 472 LYS Y 480 1 9 HELIX 43 43 GLN Y 482 THR Y 488 1 7 HELIX 44 44 TYR Y 491 HIS Y 502 1 12 HELIX 45 45 THR Y 508 HIS Y 518 1 11 HELIX 46 46 HIS Y 518 GLN Y 524 1 7 HELIX 47 47 TYR Y 527 GLY Y 539 1 13 HELIX 48 48 LYS Y 540 ARG Y 552 1 13 HELIX 49 49 LYS Y 554 SER Y 559 1 6 HELIX 50 50 ALA Y 564 ALA Y 575 1 12 HELIX 51 51 THR Y 576 CYS Y 588 1 13 HELIX 52 52 ASN Y 593 ASP Y 601 1 9 HELIX 53 53 TYR Y 603 SER Y 615 1 13 HELIX 54 54 PRO Y 617 MET Y 624 1 8 CRYST1 94.580 94.580 229.270 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010573 0.006104 0.000000 0.00000 SCALE2 0.000000 0.012209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004362 0.00000