data_3H3E # _entry.id 3H3E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3H3E pdb_00003h3e 10.2210/pdb3h3e/pdb RCSB RCSB052641 ? ? WWPDB D_1000052641 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ISFI337 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3H3E _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-16 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cooper, D.R.' 1 'Olekhnovitch, N.' 2 'Derewenda, U.' 3 'Derewenda, Z.S.' 4 'Integrated Center for Structure and Function Innovation (ISFI)' 5 # _citation.id primary _citation.title 'Crystal structure of Tm1679, A METAL-DEPENDENT HYDROLASE OF THE BETA-LACTAMASE SUPERFAMILY' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cooper, D.R.' 1 ? primary 'Olekhnovitch, N.' 2 ? primary 'Derewenda, Z.S.' 3 ? # _cell.length_a 127.169 _cell.length_b 127.169 _cell.length_c 41.044 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3H3E _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 3H3E _symmetry.Int_Tables_number 169 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein Tm1679' 30486.984 1 ? 'K100Y, K101Y' ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)RIHVLCDDSSQNGFESEHGFSVLVDSVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHY DHAGGLLYLSGKRVWLRKEALDQKYSGERYAGADWNEVLYYNTGKFVIERITEIGKN(MSE)FLLGPANLRGKVPTGDFF VERNGERRKDLFEDEQTLVVRTKEGLVVITGCSHRGIDNILLDIAETFNERIK(MSE)VVGGFHLLKSSDDEIEKIVKAF NELGVETVVPCHCTGERAVDIFKREFLGKI(MSE)DCYAGLKLEVSD ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMRIHVLCDDSSQNGFESEHGFSVLVDSVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLY LSGKRVWLRKEALDQKYSGERYAGADWNEVLYYNTGKFVIERITEIGKNMFLLGPANLRGKVPTGDFFVERNGERRKDLF EDEQTLVVRTKEGLVVITGCSHRGIDNILLDIAETFNERIKMVVGGFHLLKSSDDEIEKIVKAFNELGVETVVPCHCTGE RAVDIFKREFLGKIMDCYAGLKLEVSD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ISFI337 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 ARG n 1 15 ILE n 1 16 HIS n 1 17 VAL n 1 18 LEU n 1 19 CYS n 1 20 ASP n 1 21 ASP n 1 22 SER n 1 23 SER n 1 24 GLN n 1 25 ASN n 1 26 GLY n 1 27 PHE n 1 28 GLU n 1 29 SER n 1 30 GLU n 1 31 HIS n 1 32 GLY n 1 33 PHE n 1 34 SER n 1 35 VAL n 1 36 LEU n 1 37 VAL n 1 38 ASP n 1 39 SER n 1 40 VAL n 1 41 LEU n 1 42 PHE n 1 43 ASP n 1 44 THR n 1 45 GLY n 1 46 LYS n 1 47 SER n 1 48 ASP n 1 49 VAL n 1 50 PHE n 1 51 LEU n 1 52 LYS n 1 53 ASN n 1 54 ALA n 1 55 ARG n 1 56 LYS n 1 57 LEU n 1 58 GLY n 1 59 ILE n 1 60 ASP n 1 61 LEU n 1 62 PRO n 1 63 LYS n 1 64 ASP n 1 65 VAL n 1 66 LEU n 1 67 ILE n 1 68 SER n 1 69 HIS n 1 70 GLY n 1 71 HIS n 1 72 TYR n 1 73 ASP n 1 74 HIS n 1 75 ALA n 1 76 GLY n 1 77 GLY n 1 78 LEU n 1 79 LEU n 1 80 TYR n 1 81 LEU n 1 82 SER n 1 83 GLY n 1 84 LYS n 1 85 ARG n 1 86 VAL n 1 87 TRP n 1 88 LEU n 1 89 ARG n 1 90 LYS n 1 91 GLU n 1 92 ALA n 1 93 LEU n 1 94 ASP n 1 95 GLN n 1 96 LYS n 1 97 TYR n 1 98 SER n 1 99 GLY n 1 100 GLU n 1 101 ARG n 1 102 TYR n 1 103 ALA n 1 104 GLY n 1 105 ALA n 1 106 ASP n 1 107 TRP n 1 108 ASN n 1 109 GLU n 1 110 VAL n 1 111 LEU n 1 112 TYR n 1 113 TYR n 1 114 ASN n 1 115 THR n 1 116 GLY n 1 117 LYS n 1 118 PHE n 1 119 VAL n 1 120 ILE n 1 121 GLU n 1 122 ARG n 1 123 ILE n 1 124 THR n 1 125 GLU n 1 126 ILE n 1 127 GLY n 1 128 LYS n 1 129 ASN n 1 130 MSE n 1 131 PHE n 1 132 LEU n 1 133 LEU n 1 134 GLY n 1 135 PRO n 1 136 ALA n 1 137 ASN n 1 138 LEU n 1 139 ARG n 1 140 GLY n 1 141 LYS n 1 142 VAL n 1 143 PRO n 1 144 THR n 1 145 GLY n 1 146 ASP n 1 147 PHE n 1 148 PHE n 1 149 VAL n 1 150 GLU n 1 151 ARG n 1 152 ASN n 1 153 GLY n 1 154 GLU n 1 155 ARG n 1 156 ARG n 1 157 LYS n 1 158 ASP n 1 159 LEU n 1 160 PHE n 1 161 GLU n 1 162 ASP n 1 163 GLU n 1 164 GLN n 1 165 THR n 1 166 LEU n 1 167 VAL n 1 168 VAL n 1 169 ARG n 1 170 THR n 1 171 LYS n 1 172 GLU n 1 173 GLY n 1 174 LEU n 1 175 VAL n 1 176 VAL n 1 177 ILE n 1 178 THR n 1 179 GLY n 1 180 CYS n 1 181 SER n 1 182 HIS n 1 183 ARG n 1 184 GLY n 1 185 ILE n 1 186 ASP n 1 187 ASN n 1 188 ILE n 1 189 LEU n 1 190 LEU n 1 191 ASP n 1 192 ILE n 1 193 ALA n 1 194 GLU n 1 195 THR n 1 196 PHE n 1 197 ASN n 1 198 GLU n 1 199 ARG n 1 200 ILE n 1 201 LYS n 1 202 MSE n 1 203 VAL n 1 204 VAL n 1 205 GLY n 1 206 GLY n 1 207 PHE n 1 208 HIS n 1 209 LEU n 1 210 LEU n 1 211 LYS n 1 212 SER n 1 213 SER n 1 214 ASP n 1 215 ASP n 1 216 GLU n 1 217 ILE n 1 218 GLU n 1 219 LYS n 1 220 ILE n 1 221 VAL n 1 222 LYS n 1 223 ALA n 1 224 PHE n 1 225 ASN n 1 226 GLU n 1 227 LEU n 1 228 GLY n 1 229 VAL n 1 230 GLU n 1 231 THR n 1 232 VAL n 1 233 VAL n 1 234 PRO n 1 235 CYS n 1 236 HIS n 1 237 CYS n 1 238 THR n 1 239 GLY n 1 240 GLU n 1 241 ARG n 1 242 ALA n 1 243 VAL n 1 244 ASP n 1 245 ILE n 1 246 PHE n 1 247 LYS n 1 248 ARG n 1 249 GLU n 1 250 PHE n 1 251 LEU n 1 252 GLY n 1 253 LYS n 1 254 ILE n 1 255 MSE n 1 256 ASP n 1 257 CYS n 1 258 TYR n 1 259 ALA n 1 260 GLY n 1 261 LEU n 1 262 LYS n 1 263 LEU n 1 264 GLU n 1 265 VAL n 1 266 SER n 1 267 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_1679 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X207_THEMA _struct_ref.pdbx_db_accession Q9X207 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RIHVLCDDSSQNGFESEHGFSVLVDSVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGKRVWLRKEAL DQKYSGERYAGADWNEVLKKNTGKFVIERITEIGKNMFLLGPANLRGKVPTGDFFVERNGERRKDLFEDEQTLVVRTKEG LVVITGCSHRGIDNILLDIAETFNERIKMVVGGFHLLKSSDDEIEKIVKAFNELGVETVVPCHCTGERAVDIFKREFLGK IMDCYAGLKLEVSD ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3H3E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 14 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 267 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X207 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 255 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 255 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3H3E MSE A 1 ? UNP Q9X207 ? ? 'expression tag' -11 1 1 3H3E GLY A 2 ? UNP Q9X207 ? ? 'expression tag' -10 2 1 3H3E SER A 3 ? UNP Q9X207 ? ? 'expression tag' -9 3 1 3H3E ASP A 4 ? UNP Q9X207 ? ? 'expression tag' -8 4 1 3H3E LYS A 5 ? UNP Q9X207 ? ? 'expression tag' -7 5 1 3H3E ILE A 6 ? UNP Q9X207 ? ? 'expression tag' -6 6 1 3H3E HIS A 7 ? UNP Q9X207 ? ? 'expression tag' -5 7 1 3H3E HIS A 8 ? UNP Q9X207 ? ? 'expression tag' -4 8 1 3H3E HIS A 9 ? UNP Q9X207 ? ? 'expression tag' -3 9 1 3H3E HIS A 10 ? UNP Q9X207 ? ? 'expression tag' -2 10 1 3H3E HIS A 11 ? UNP Q9X207 ? ? 'expression tag' -1 11 1 3H3E HIS A 12 ? UNP Q9X207 ? ? 'expression tag' 0 12 1 3H3E MSE A 13 ? UNP Q9X207 ? ? 'expression tag' 1 13 1 3H3E TYR A 112 ? UNP Q9X207 LYS 100 'engineered mutation' 100 14 1 3H3E TYR A 113 ? UNP Q9X207 LYS 101 'engineered mutation' 101 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3H3E _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;Crystallization drop was 1:1 mixture of protein and 12% PEG 3000, 100 mM Sodium Citrate pH 5.3. The crystallization reservoir was 60 ul of 1.5 M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-12-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97910 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_wavelength_list 0.97910 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM # _reflns.entry_id 3H3E _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.749 _reflns.d_resolution_low 30 _reflns.number_all ? _reflns.number_obs 10088 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.169 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.18 _reflns.B_iso_Wilson_estimate 54.0 _reflns.pdbx_redundancy 13.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.75 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs 0.564 _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3H3E _refine.ls_d_res_high 2.749 _refine.ls_d_res_low 29.226 _refine.pdbx_ls_sigma_F 1.89 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.700 _refine.ls_number_reflns_obs 19063 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details ? _refine.details 'TLS refinement included' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.151 _refine.ls_R_factor_R_work 0.151 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.207 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 1.470 _refine.ls_number_reflns_R_free 281 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 32.341 _refine.solvent_model_param_bsol 28.817 _refine.solvent_model_param_ksol 0.350 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.633 _refine.aniso_B[2][2] 0.633 _refine.aniso_B[3][3] -1.266 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.330 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 413.68 _refine.B_iso_min 6.83 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2033 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 2123 _refine_hist.d_res_high 2.749 _refine_hist.d_res_low 29.226 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 2072 0.008 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 2784 1.097 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 306 0.071 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 360 0.004 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 761 16.677 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.749 3.463 2 98.000 9340 . 0.172 0.217 . 141 . 9481 . . 'X-RAY DIFFRACTION' 3.463 29.228 2 99.000 9442 . 0.139 0.201 . 140 . 9582 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3H3E _struct.title 'Crystal structure of Tm1679, A METAL-DEPENDENT HYDROLASE OF THE BETA-LACTAMASE SUPERFAMILY' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3H3E _struct_keywords.text ;structural genomics, Surface Entropy Reduction, ISFI, BETA-LACTAMASE SUPERFAMILY, PSI-2, Protein Structure Initiative, Integrated Center for Structure and Function Innovation, unknown function, METAL BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'structural genomics, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 48 ? LEU A 57 ? ASP A 36 LEU A 45 1 ? 10 HELX_P HELX_P2 2 HIS A 71 ? GLY A 76 ? HIS A 59 GLY A 64 1 ? 6 HELX_P HELX_P3 3 GLY A 77 ? LEU A 81 ? GLY A 65 LEU A 69 5 ? 5 HELX_P HELX_P4 4 GLU A 91 ? ASP A 94 ? GLU A 79 ASP A 82 5 ? 4 HELX_P HELX_P5 5 ASP A 106 ? ASN A 114 ? ASP A 94 ASN A 102 1 ? 9 HELX_P HELX_P6 6 GLY A 184 ? GLU A 194 ? GLY A 172 GLU A 182 1 ? 11 HELX_P HELX_P7 7 SER A 213 ? LEU A 227 ? SER A 201 LEU A 215 1 ? 15 HELX_P HELX_P8 8 GLY A 239 ? PHE A 250 ? GLY A 227 PHE A 238 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 180 SG ? ? ? 1_555 A CYS 237 SG ? ? A CYS 168 A CYS 225 1_555 ? ? ? ? ? ? ? 2.058 ? ? disulf2 disulf ? ? A CYS 235 SG ? ? ? 1_555 A CYS 257 SG ? ? A CYS 223 A CYS 245 1_555 ? ? ? ? ? ? ? 2.044 ? ? covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A ARG 14 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A ASN 129 C ? ? ? 1_555 A MSE 130 N ? ? A ASN 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 130 C ? ? ? 1_555 A PHE 131 N ? ? A MSE 118 A PHE 119 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A LYS 201 C ? ? ? 1_555 A MSE 202 N ? ? A LYS 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? A MSE 202 C ? ? ? 1_555 A VAL 203 N ? ? A MSE 190 A VAL 191 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A ILE 254 C ? ? ? 1_555 A MSE 255 N ? ? A ILE 242 A MSE 243 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MSE 255 C ? ? ? 1_555 A ASP 256 N ? ? A MSE 243 A ASP 244 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A HIS 69 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 57 A ZN 256 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc2 metalc ? ? A HIS 71 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 59 A ZN 256 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc3 metalc ? ? A HIS 182 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 170 A ZN 256 1_555 ? ? ? ? ? ? ? 2.371 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 4 ? C ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? parallel C 5 6 ? parallel C 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 115 ? VAL A 119 ? THR A 103 VAL A 107 A 2 ARG A 85 ? ARG A 89 ? ARG A 73 ARG A 77 A 3 ASP A 64 ? LEU A 66 ? ASP A 52 LEU A 54 A 4 VAL A 40 ? PHE A 42 ? VAL A 28 PHE A 30 A 5 SER A 34 ? VAL A 37 ? SER A 22 VAL A 25 A 6 MSE A 13 ? CYS A 19 ? MSE A 1 CYS A 7 A 7 LYS A 262 ? VAL A 265 ? LYS A 250 VAL A 253 B 1 ARG A 101 ? TYR A 102 ? ARG A 89 TYR A 90 B 2 GLN A 95 ? SER A 98 ? GLN A 83 SER A 86 B 3 PHE A 147 ? GLU A 150 ? PHE A 135 GLU A 138 B 4 ARG A 155 ? LYS A 157 ? ARG A 143 LYS A 145 C 1 ILE A 123 ? GLY A 127 ? ILE A 111 GLY A 115 C 2 MSE A 130 ? LEU A 133 ? MSE A 118 LEU A 121 C 3 THR A 165 ? THR A 170 ? THR A 153 THR A 158 C 4 GLY A 173 ? THR A 178 ? GLY A 161 THR A 166 C 5 ILE A 200 ? GLY A 206 ? ILE A 188 GLY A 194 C 6 THR A 231 ? CYS A 235 ? THR A 219 CYS A 223 C 7 LYS A 253 ? ILE A 254 ? LYS A 241 ILE A 242 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 117 ? O LYS A 105 N VAL A 86 ? N VAL A 74 A 2 3 O TRP A 87 ? O TRP A 75 N VAL A 65 ? N VAL A 53 A 3 4 O LEU A 66 ? O LEU A 54 N LEU A 41 ? N LEU A 29 A 4 5 O PHE A 42 ? O PHE A 30 N VAL A 35 ? N VAL A 23 A 5 6 O LEU A 36 ? O LEU A 24 N HIS A 16 ? N HIS A 4 A 6 7 N MSE A 13 ? N MSE A 1 O VAL A 265 ? O VAL A 253 B 1 2 O ARG A 101 ? O ARG A 89 N SER A 98 ? N SER A 86 B 2 3 N TYR A 97 ? N TYR A 85 O PHE A 148 ? O PHE A 136 B 3 4 N VAL A 149 ? N VAL A 137 O ARG A 156 ? O ARG A 144 C 1 2 N THR A 124 ? N THR A 112 O LEU A 132 ? O LEU A 120 C 2 3 N LEU A 133 ? N LEU A 121 O THR A 165 ? O THR A 153 C 3 4 N VAL A 168 ? N VAL A 156 O VAL A 175 ? O VAL A 163 C 4 5 N VAL A 176 ? N VAL A 164 O VAL A 204 ? O VAL A 192 C 5 6 N VAL A 203 ? N VAL A 191 O VAL A 233 ? O VAL A 221 C 6 7 N VAL A 232 ? N VAL A 220 O LYS A 253 ? O LYS A 241 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 256 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 256' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 69 ? HIS A 57 . ? 1_555 ? 2 AC1 4 HIS A 71 ? HIS A 59 . ? 1_555 ? 3 AC1 4 CYS A 180 ? CYS A 168 . ? 1_555 ? 4 AC1 4 HIS A 182 ? HIS A 170 . ? 1_555 ? # _atom_sites.entry_id 3H3E _atom_sites.fract_transf_matrix[1][1] 0.007864 _atom_sites.fract_transf_matrix[1][2] 0.004540 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009080 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024364 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 ARG 14 2 2 ARG ARG A . n A 1 15 ILE 15 3 3 ILE ILE A . n A 1 16 HIS 16 4 4 HIS HIS A . n A 1 17 VAL 17 5 5 VAL VAL A . n A 1 18 LEU 18 6 6 LEU LEU A . n A 1 19 CYS 19 7 7 CYS CYS A . n A 1 20 ASP 20 8 8 ASP ASP A . n A 1 21 ASP 21 9 9 ASP ASP A . n A 1 22 SER 22 10 10 SER SER A . n A 1 23 SER 23 11 11 SER SER A . n A 1 24 GLN 24 12 12 GLN GLN A . n A 1 25 ASN 25 13 13 ASN ASN A . n A 1 26 GLY 26 14 14 GLY GLY A . n A 1 27 PHE 27 15 15 PHE PHE A . n A 1 28 GLU 28 16 16 GLU GLU A . n A 1 29 SER 29 17 17 SER SER A . n A 1 30 GLU 30 18 18 GLU GLU A . n A 1 31 HIS 31 19 19 HIS HIS A . n A 1 32 GLY 32 20 20 GLY GLY A . n A 1 33 PHE 33 21 21 PHE PHE A . n A 1 34 SER 34 22 22 SER SER A . n A 1 35 VAL 35 23 23 VAL VAL A . n A 1 36 LEU 36 24 24 LEU LEU A . n A 1 37 VAL 37 25 25 VAL VAL A . n A 1 38 ASP 38 26 26 ASP ASP A . n A 1 39 SER 39 27 27 SER SER A . n A 1 40 VAL 40 28 28 VAL VAL A . n A 1 41 LEU 41 29 29 LEU LEU A . n A 1 42 PHE 42 30 30 PHE PHE A . n A 1 43 ASP 43 31 31 ASP ASP A . n A 1 44 THR 44 32 32 THR THR A . n A 1 45 GLY 45 33 33 GLY GLY A . n A 1 46 LYS 46 34 34 LYS LYS A . n A 1 47 SER 47 35 35 SER SER A . n A 1 48 ASP 48 36 36 ASP ASP A . n A 1 49 VAL 49 37 37 VAL VAL A . n A 1 50 PHE 50 38 38 PHE PHE A . n A 1 51 LEU 51 39 39 LEU LEU A . n A 1 52 LYS 52 40 40 LYS LYS A . n A 1 53 ASN 53 41 41 ASN ASN A . n A 1 54 ALA 54 42 42 ALA ALA A . n A 1 55 ARG 55 43 43 ARG ARG A . n A 1 56 LYS 56 44 44 LYS LYS A . n A 1 57 LEU 57 45 45 LEU LEU A . n A 1 58 GLY 58 46 46 GLY GLY A . n A 1 59 ILE 59 47 47 ILE ILE A . n A 1 60 ASP 60 48 48 ASP ASP A . n A 1 61 LEU 61 49 49 LEU LEU A . n A 1 62 PRO 62 50 50 PRO PRO A . n A 1 63 LYS 63 51 51 LYS LYS A . n A 1 64 ASP 64 52 52 ASP ASP A . n A 1 65 VAL 65 53 53 VAL VAL A . n A 1 66 LEU 66 54 54 LEU LEU A . n A 1 67 ILE 67 55 55 ILE ILE A . n A 1 68 SER 68 56 56 SER SER A . n A 1 69 HIS 69 57 57 HIS HIS A . n A 1 70 GLY 70 58 58 GLY GLY A . n A 1 71 HIS 71 59 59 HIS HIS A . n A 1 72 TYR 72 60 60 TYR TYR A . n A 1 73 ASP 73 61 61 ASP ASP A . n A 1 74 HIS 74 62 62 HIS HIS A . n A 1 75 ALA 75 63 63 ALA ALA A . n A 1 76 GLY 76 64 64 GLY GLY A . n A 1 77 GLY 77 65 65 GLY GLY A . n A 1 78 LEU 78 66 66 LEU LEU A . n A 1 79 LEU 79 67 67 LEU LEU A . n A 1 80 TYR 80 68 68 TYR TYR A . n A 1 81 LEU 81 69 69 LEU LEU A . n A 1 82 SER 82 70 70 SER SER A . n A 1 83 GLY 83 71 71 GLY GLY A . n A 1 84 LYS 84 72 72 LYS LYS A . n A 1 85 ARG 85 73 73 ARG ARG A . n A 1 86 VAL 86 74 74 VAL VAL A . n A 1 87 TRP 87 75 75 TRP TRP A . n A 1 88 LEU 88 76 76 LEU LEU A . n A 1 89 ARG 89 77 77 ARG ARG A . n A 1 90 LYS 90 78 78 LYS LYS A . n A 1 91 GLU 91 79 79 GLU GLU A . n A 1 92 ALA 92 80 80 ALA ALA A . n A 1 93 LEU 93 81 81 LEU LEU A . n A 1 94 ASP 94 82 82 ASP ASP A . n A 1 95 GLN 95 83 83 GLN GLN A . n A 1 96 LYS 96 84 84 LYS LYS A . n A 1 97 TYR 97 85 85 TYR TYR A . n A 1 98 SER 98 86 86 SER SER A . n A 1 99 GLY 99 87 87 GLY GLY A . n A 1 100 GLU 100 88 88 GLU GLU A . n A 1 101 ARG 101 89 89 ARG ARG A . n A 1 102 TYR 102 90 90 TYR TYR A . n A 1 103 ALA 103 91 91 ALA ALA A . n A 1 104 GLY 104 92 92 GLY GLY A . n A 1 105 ALA 105 93 93 ALA ALA A . n A 1 106 ASP 106 94 94 ASP ASP A . n A 1 107 TRP 107 95 95 TRP TRP A . n A 1 108 ASN 108 96 96 ASN ASN A . n A 1 109 GLU 109 97 97 GLU GLU A . n A 1 110 VAL 110 98 98 VAL VAL A . n A 1 111 LEU 111 99 99 LEU LEU A . n A 1 112 TYR 112 100 100 TYR TYR A . n A 1 113 TYR 113 101 101 TYR TYR A . n A 1 114 ASN 114 102 102 ASN ASN A . n A 1 115 THR 115 103 103 THR THR A . n A 1 116 GLY 116 104 104 GLY GLY A . n A 1 117 LYS 117 105 105 LYS LYS A . n A 1 118 PHE 118 106 106 PHE PHE A . n A 1 119 VAL 119 107 107 VAL VAL A . n A 1 120 ILE 120 108 108 ILE ILE A . n A 1 121 GLU 121 109 109 GLU GLU A . n A 1 122 ARG 122 110 110 ARG ARG A . n A 1 123 ILE 123 111 111 ILE ILE A . n A 1 124 THR 124 112 112 THR THR A . n A 1 125 GLU 125 113 113 GLU GLU A . n A 1 126 ILE 126 114 114 ILE ILE A . n A 1 127 GLY 127 115 115 GLY GLY A . n A 1 128 LYS 128 116 116 LYS LYS A . n A 1 129 ASN 129 117 117 ASN ASN A . n A 1 130 MSE 130 118 118 MSE MSE A . n A 1 131 PHE 131 119 119 PHE PHE A . n A 1 132 LEU 132 120 120 LEU LEU A . n A 1 133 LEU 133 121 121 LEU LEU A . n A 1 134 GLY 134 122 122 GLY GLY A . n A 1 135 PRO 135 123 123 PRO PRO A . n A 1 136 ALA 136 124 124 ALA ALA A . n A 1 137 ASN 137 125 125 ASN ASN A . n A 1 138 LEU 138 126 126 LEU LEU A . n A 1 139 ARG 139 127 127 ARG ARG A . n A 1 140 GLY 140 128 128 GLY GLY A . n A 1 141 LYS 141 129 129 LYS LYS A . n A 1 142 VAL 142 130 130 VAL VAL A . n A 1 143 PRO 143 131 131 PRO PRO A . n A 1 144 THR 144 132 132 THR THR A . n A 1 145 GLY 145 133 133 GLY GLY A . n A 1 146 ASP 146 134 134 ASP ASP A . n A 1 147 PHE 147 135 135 PHE PHE A . n A 1 148 PHE 148 136 136 PHE PHE A . n A 1 149 VAL 149 137 137 VAL VAL A . n A 1 150 GLU 150 138 138 GLU GLU A . n A 1 151 ARG 151 139 139 ARG ARG A . n A 1 152 ASN 152 140 140 ASN ASN A . n A 1 153 GLY 153 141 141 GLY GLY A . n A 1 154 GLU 154 142 142 GLU GLU A . n A 1 155 ARG 155 143 143 ARG ARG A . n A 1 156 ARG 156 144 144 ARG ARG A . n A 1 157 LYS 157 145 145 LYS LYS A . n A 1 158 ASP 158 146 146 ASP ASP A . n A 1 159 LEU 159 147 147 LEU LEU A . n A 1 160 PHE 160 148 148 PHE PHE A . n A 1 161 GLU 161 149 149 GLU GLU A . n A 1 162 ASP 162 150 150 ASP ASP A . n A 1 163 GLU 163 151 151 GLU GLU A . n A 1 164 GLN 164 152 152 GLN GLN A . n A 1 165 THR 165 153 153 THR THR A . n A 1 166 LEU 166 154 154 LEU LEU A . n A 1 167 VAL 167 155 155 VAL VAL A . n A 1 168 VAL 168 156 156 VAL VAL A . n A 1 169 ARG 169 157 157 ARG ARG A . n A 1 170 THR 170 158 158 THR THR A . n A 1 171 LYS 171 159 159 LYS LYS A . n A 1 172 GLU 172 160 160 GLU GLU A . n A 1 173 GLY 173 161 161 GLY GLY A . n A 1 174 LEU 174 162 162 LEU LEU A . n A 1 175 VAL 175 163 163 VAL VAL A . n A 1 176 VAL 176 164 164 VAL VAL A . n A 1 177 ILE 177 165 165 ILE ILE A . n A 1 178 THR 178 166 166 THR THR A . n A 1 179 GLY 179 167 167 GLY GLY A . n A 1 180 CYS 180 168 168 CYS CYS A . n A 1 181 SER 181 169 169 SER SER A . n A 1 182 HIS 182 170 170 HIS HIS A . n A 1 183 ARG 183 171 171 ARG ARG A . n A 1 184 GLY 184 172 172 GLY GLY A . n A 1 185 ILE 185 173 173 ILE ILE A . n A 1 186 ASP 186 174 174 ASP ASP A . n A 1 187 ASN 187 175 175 ASN ASN A . n A 1 188 ILE 188 176 176 ILE ILE A . n A 1 189 LEU 189 177 177 LEU LEU A . n A 1 190 LEU 190 178 178 LEU LEU A . n A 1 191 ASP 191 179 179 ASP ASP A . n A 1 192 ILE 192 180 180 ILE ILE A . n A 1 193 ALA 193 181 181 ALA ALA A . n A 1 194 GLU 194 182 182 GLU GLU A . n A 1 195 THR 195 183 183 THR THR A . n A 1 196 PHE 196 184 184 PHE PHE A . n A 1 197 ASN 197 185 185 ASN ASN A . n A 1 198 GLU 198 186 186 GLU GLU A . n A 1 199 ARG 199 187 187 ARG ARG A . n A 1 200 ILE 200 188 188 ILE ILE A . n A 1 201 LYS 201 189 189 LYS LYS A . n A 1 202 MSE 202 190 190 MSE MSE A . n A 1 203 VAL 203 191 191 VAL VAL A . n A 1 204 VAL 204 192 192 VAL VAL A . n A 1 205 GLY 205 193 193 GLY GLY A . n A 1 206 GLY 206 194 194 GLY GLY A . n A 1 207 PHE 207 195 195 PHE PHE A . n A 1 208 HIS 208 196 196 HIS HIS A . n A 1 209 LEU 209 197 197 LEU LEU A . n A 1 210 LEU 210 198 198 LEU LEU A . n A 1 211 LYS 211 199 199 LYS LYS A . n A 1 212 SER 212 200 200 SER SER A . n A 1 213 SER 213 201 201 SER SER A . n A 1 214 ASP 214 202 202 ASP ASP A . n A 1 215 ASP 215 203 203 ASP ASP A . n A 1 216 GLU 216 204 204 GLU GLU A . n A 1 217 ILE 217 205 205 ILE ILE A . n A 1 218 GLU 218 206 206 GLU GLU A . n A 1 219 LYS 219 207 207 LYS LYS A . n A 1 220 ILE 220 208 208 ILE ILE A . n A 1 221 VAL 221 209 209 VAL VAL A . n A 1 222 LYS 222 210 210 LYS LYS A . n A 1 223 ALA 223 211 211 ALA ALA A . n A 1 224 PHE 224 212 212 PHE PHE A . n A 1 225 ASN 225 213 213 ASN ASN A . n A 1 226 GLU 226 214 214 GLU GLU A . n A 1 227 LEU 227 215 215 LEU LEU A . n A 1 228 GLY 228 216 216 GLY GLY A . n A 1 229 VAL 229 217 217 VAL VAL A . n A 1 230 GLU 230 218 218 GLU GLU A . n A 1 231 THR 231 219 219 THR THR A . n A 1 232 VAL 232 220 220 VAL VAL A . n A 1 233 VAL 233 221 221 VAL VAL A . n A 1 234 PRO 234 222 222 PRO PRO A . n A 1 235 CYS 235 223 223 CYS CYS A . n A 1 236 HIS 236 224 224 HIS HIS A . n A 1 237 CYS 237 225 225 CYS CYS A . n A 1 238 THR 238 226 226 THR THR A . n A 1 239 GLY 239 227 227 GLY GLY A . n A 1 240 GLU 240 228 228 GLU GLU A . n A 1 241 ARG 241 229 229 ARG ARG A . n A 1 242 ALA 242 230 230 ALA ALA A . n A 1 243 VAL 243 231 231 VAL VAL A . n A 1 244 ASP 244 232 232 ASP ASP A . n A 1 245 ILE 245 233 233 ILE ILE A . n A 1 246 PHE 246 234 234 PHE PHE A . n A 1 247 LYS 247 235 235 LYS LYS A . n A 1 248 ARG 248 236 236 ARG ARG A . n A 1 249 GLU 249 237 237 GLU GLU A . n A 1 250 PHE 250 238 238 PHE PHE A . n A 1 251 LEU 251 239 239 LEU LEU A . n A 1 252 GLY 252 240 240 GLY GLY A . n A 1 253 LYS 253 241 241 LYS LYS A . n A 1 254 ILE 254 242 242 ILE ILE A . n A 1 255 MSE 255 243 243 MSE MSE A . n A 1 256 ASP 256 244 244 ASP ASP A . n A 1 257 CYS 257 245 245 CYS CYS A . n A 1 258 TYR 258 246 246 TYR TYR A . n A 1 259 ALA 259 247 247 ALA ALA A . n A 1 260 GLY 260 248 248 GLY GLY A . n A 1 261 LEU 261 249 249 LEU LEU A . n A 1 262 LYS 262 250 250 LYS LYS A . n A 1 263 LEU 263 251 251 LEU LEU A . n A 1 264 GLU 264 252 252 GLU GLU A . n A 1 265 VAL 265 253 253 VAL VAL A . n A 1 266 SER 266 254 254 SER SER A . n A 1 267 ASP 267 255 255 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Integrated Center for Structure and Function Innovation' _pdbx_SG_project.initial_of_center ISFI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 256 1 ZN ZN A . C 3 HOH 1 257 1 HOH HOH A . C 3 HOH 2 258 2 HOH HOH A . C 3 HOH 3 259 3 HOH HOH A . C 3 HOH 4 260 4 HOH HOH A . C 3 HOH 5 261 5 HOH HOH A . C 3 HOH 6 262 6 HOH HOH A . C 3 HOH 7 263 7 HOH HOH A . C 3 HOH 8 264 8 HOH HOH A . C 3 HOH 9 265 9 HOH HOH A . C 3 HOH 10 266 10 HOH HOH A . C 3 HOH 11 267 11 HOH HOH A . C 3 HOH 12 268 12 HOH HOH A . C 3 HOH 13 269 13 HOH HOH A . C 3 HOH 14 270 14 HOH HOH A . C 3 HOH 15 271 15 HOH HOH A . C 3 HOH 16 272 16 HOH HOH A . C 3 HOH 17 273 17 HOH HOH A . C 3 HOH 18 274 18 HOH HOH A . C 3 HOH 19 275 19 HOH HOH A . C 3 HOH 20 276 20 HOH HOH A . C 3 HOH 21 277 21 HOH HOH A . C 3 HOH 22 278 22 HOH HOH A . C 3 HOH 23 279 23 HOH HOH A . C 3 HOH 24 280 24 HOH HOH A . C 3 HOH 25 281 25 HOH HOH A . C 3 HOH 26 282 26 HOH HOH A . C 3 HOH 27 283 27 HOH HOH A . C 3 HOH 28 284 28 HOH HOH A . C 3 HOH 29 285 29 HOH HOH A . C 3 HOH 30 286 30 HOH HOH A . C 3 HOH 31 287 31 HOH HOH A . C 3 HOH 32 288 32 HOH HOH A . C 3 HOH 33 289 33 HOH HOH A . C 3 HOH 34 290 34 HOH HOH A . C 3 HOH 35 291 35 HOH HOH A . C 3 HOH 36 292 36 HOH HOH A . C 3 HOH 37 293 37 HOH HOH A . C 3 HOH 38 294 38 HOH HOH A . C 3 HOH 39 295 39 HOH HOH A . C 3 HOH 40 296 40 HOH HOH A . C 3 HOH 41 297 41 HOH HOH A . C 3 HOH 42 298 42 HOH HOH A . C 3 HOH 43 299 43 HOH HOH A . C 3 HOH 44 300 44 HOH HOH A . C 3 HOH 45 301 45 HOH HOH A . C 3 HOH 46 302 46 HOH HOH A . C 3 HOH 47 303 47 HOH HOH A . C 3 HOH 48 304 48 HOH HOH A . C 3 HOH 49 305 49 HOH HOH A . C 3 HOH 50 306 50 HOH HOH A . C 3 HOH 51 307 51 HOH HOH A . C 3 HOH 52 308 52 HOH HOH A . C 3 HOH 53 309 53 HOH HOH A . C 3 HOH 54 310 54 HOH HOH A . C 3 HOH 55 311 55 HOH HOH A . C 3 HOH 56 312 56 HOH HOH A . C 3 HOH 57 313 57 HOH HOH A . C 3 HOH 58 314 58 HOH HOH A . C 3 HOH 59 315 59 HOH HOH A . C 3 HOH 60 316 60 HOH HOH A . C 3 HOH 61 317 61 HOH HOH A . C 3 HOH 62 318 62 HOH HOH A . C 3 HOH 63 319 63 HOH HOH A . C 3 HOH 64 320 64 HOH HOH A . C 3 HOH 65 321 65 HOH HOH A . C 3 HOH 66 322 66 HOH HOH A . C 3 HOH 67 323 67 HOH HOH A . C 3 HOH 68 324 68 HOH HOH A . C 3 HOH 69 325 69 HOH HOH A . C 3 HOH 70 326 70 HOH HOH A . C 3 HOH 71 327 71 HOH HOH A . C 3 HOH 72 328 72 HOH HOH A . C 3 HOH 73 329 73 HOH HOH A . C 3 HOH 74 330 74 HOH HOH A . C 3 HOH 75 331 75 HOH HOH A . C 3 HOH 76 332 76 HOH HOH A . C 3 HOH 77 333 77 HOH HOH A . C 3 HOH 78 334 78 HOH HOH A . C 3 HOH 79 335 79 HOH HOH A . C 3 HOH 80 336 81 HOH HOH A . C 3 HOH 81 337 82 HOH HOH A . C 3 HOH 82 338 83 HOH HOH A . C 3 HOH 83 339 84 HOH HOH A . C 3 HOH 84 340 85 HOH HOH A . C 3 HOH 85 341 87 HOH HOH A . C 3 HOH 86 342 88 HOH HOH A . C 3 HOH 87 343 89 HOH HOH A . C 3 HOH 88 344 90 HOH HOH A . C 3 HOH 89 345 91 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 130 A MSE 118 ? MET SELENOMETHIONINE 3 A MSE 202 A MSE 190 ? MET SELENOMETHIONINE 4 A MSE 255 A MSE 243 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 69 ? A HIS 57 ? 1_555 ZN ? B ZN . ? A ZN 256 ? 1_555 ND1 ? A HIS 71 ? A HIS 59 ? 1_555 89.4 ? 2 NE2 ? A HIS 69 ? A HIS 57 ? 1_555 ZN ? B ZN . ? A ZN 256 ? 1_555 NE2 ? A HIS 182 ? A HIS 170 ? 1_555 96.0 ? 3 ND1 ? A HIS 71 ? A HIS 59 ? 1_555 ZN ? B ZN . ? A ZN 256 ? 1_555 NE2 ? A HIS 182 ? A HIS 170 ? 1_555 99.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.750 _diffrn_reflns.pdbx_d_res_low 30.000 _diffrn_reflns.pdbx_number_obs 10088 _diffrn_reflns.pdbx_Rmerge_I_obs 0.169 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.31 _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy 13.40 _diffrn_reflns.pdbx_percent_possible_obs 99.40 _diffrn_reflns.number 135066 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.91 30.00 ? ? 0.093 ? 1.945 14.40 98.70 1 4.70 5.91 ? ? 0.122 ? 1.613 14.90 99.20 1 4.11 4.70 ? ? 0.112 ? 1.575 15.10 99.60 1 3.73 4.11 ? ? 0.138 ? 1.306 15.00 99.50 1 3.46 3.73 ? ? 0.189 ? 1.168 15.00 99.70 1 3.26 3.46 ? ? 0.234 ? 1.079 14.90 99.60 1 3.10 3.26 ? ? 0.327 ? 1.037 14.40 99.80 1 2.96 3.10 ? ? 0.428 ? 1.037 13.00 99.90 1 2.85 2.96 ? ? 0.507 ? 0.957 10.00 99.80 1 2.75 2.85 ? ? 0.564 ? 0.989 7.20 98.50 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 21.8008 68.5824 27.1800 0.0481 0.0953 0.1029 0.0086 0.0224 -0.0066 0.8927 1.4953 1.0097 -1.0141 -0.0812 0.2465 0.0924 -0.0001 -0.0910 -0.0120 0.1303 -0.1335 -0.0146 -0.0583 0.1352 'X-RAY DIFFRACTION' 2 ? refined 21.3111 63.8956 19.8618 0.4467 0.3452 0.3497 0.1274 -0.0555 0.0116 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 'chain A' 1 1 A 0 A 255 ? ? ? ? ? 'X-RAY DIFFRACTION' 'chain Z' 2 2 A 1 A 256 ? ? ? ? ? # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso 1 Se 0.998 0.497 0.633 0.995 53.466 2 Se 0.655 0.557 0.736 0.800 25.485 3 Se 0.761 0.599 0.766 0.718 35.990 4 Se 0.759 0.543 0.691 0.972 60.000 5 Se 0.390 0.457 0.583 0.487 45.406 # _pdbx_phasing_dm.entry_id 3H3E _pdbx_phasing_dm.fom_acentric 0.680 _pdbx_phasing_dm.fom_centric 0.710 _pdbx_phasing_dm.fom 0.680 _pdbx_phasing_dm.reflns_acentric 8406 _pdbx_phasing_dm.reflns_centric 809 _pdbx_phasing_dm.reflns 9215 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 7.900 29.226 ? ? 0.900 0.730 0.860 343 105 448 4.900 7.900 ? ? 0.820 0.750 0.810 1162 163 1325 3.900 4.900 ? ? 0.860 0.770 0.850 1505 159 1664 3.400 3.900 ? ? 0.780 0.710 0.780 1473 113 1586 2.900 3.400 ? ? 0.600 0.720 0.610 2526 184 2710 2.800 2.900 ? ? 0.360 0.490 0.370 1397 85 1482 # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SOLVE 2.13 2-Jul-2007 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 2 RESOLVE 2.13 23-Jun-2007 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 3 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 VAL _pdbx_validate_close_contact.auth_seq_id_1 5 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ALA _pdbx_validate_close_contact.auth_seq_id_2 247 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 225 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 225 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 225 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 122.04 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.84 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 26 ? ? 55.06 -110.40 2 1 ASP A 31 ? ? 66.67 166.63 3 1 THR A 32 ? ? -144.05 20.59 4 1 SER A 35 ? ? -130.71 -140.29 5 1 ILE A 114 ? ? -93.50 -61.69 6 1 ARG A 127 ? ? 38.33 47.22 7 1 ASN A 140 ? ? 81.30 13.31 8 1 HIS A 224 ? ? 58.90 -120.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH #