HEADER MEMBRANE PROTEIN 23-APR-09 3H6G TITLE CRYSTAL STRUCTURE OF THE GLUR6 AMINO TERMINAL DOMAIN DIMER ASSEMBLY CAVEAT 3H6G NAG A 396 HAS WRONG CHIRALITY AT ATOM C1 NAG A 397 HAS WRONG CAVEAT 2 3H6G CHIRALITY AT ATOM C1 NAG A 398 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 3H6G C1 NAG B 396 HAS WRONG CHIRALITY AT ATOM C1 NAG B 398 HAS CAVEAT 4 3H6G WRONG CHIRALITY AT ATOM C1 TLA B 399 HAS WRONG CHIRALITY AT CAVEAT 5 3H6G ATOM C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 32-420; COMPND 5 SYNONYM: GLUTAMATE RECEPTOR 6, GLUR-6, GLUR6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GLUR6, GRIK2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK-293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRK8 KEYWDS MEMBRANE PROTEIN GLYCOPROTEIN, CELL JUNCTION, CELL MEMBRANE, KEYWDS 2 GLYCOPROTEIN, ION TRANSPORT, IONIC CHANNEL, ISOPEPTIDE BOND, KEYWDS 3 MEMBRANE, POSTSYNAPTIC CELL MEMBRANE, RECEPTOR, RNA EDITING, KEYWDS 4 SYNAPSE, TRANSMEMBRANE, TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KUMAR,M.L.MAYER REVDAT 6 06-SEP-23 3H6G 1 REMARK REVDAT 5 31-MAR-21 3H6G 1 SOURCE HETSYN REVDAT 4 29-JUL-20 3H6G 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HETNAM LINK SITE REVDAT 3 13-JUL-11 3H6G 1 VERSN REVDAT 2 01-SEP-09 3H6G 1 JRNL REVDAT 1 26-MAY-09 3H6G 0 JRNL AUTH J.KUMAR,P.SCHUCK,R.JIN,M.L.MAYER JRNL TITL THE N-TERMINAL DOMAIN OF GLUR6-SUBTYPE GLUTAMATE RECEPTOR JRNL TITL 2 ION CHANNELS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 631 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19465914 JRNL DOI 10.1038/NSMB.1613 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 50708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8073 - 7.0596 0.98 2744 144 0.1946 0.1724 REMARK 3 2 7.0596 - 5.6064 0.99 2750 140 0.1918 0.2295 REMARK 3 3 5.6064 - 4.8986 0.99 2697 157 0.1607 0.1837 REMARK 3 4 4.8986 - 4.4511 0.99 2741 140 0.1525 0.1819 REMARK 3 5 4.4511 - 4.1323 1.00 2728 138 0.1556 0.1859 REMARK 3 6 4.1323 - 3.8888 1.00 2723 153 0.1671 0.2163 REMARK 3 7 3.8888 - 3.6941 1.00 2711 140 0.1827 0.2088 REMARK 3 8 3.6941 - 3.5333 1.00 2747 131 0.2041 0.1928 REMARK 3 9 3.5333 - 3.3974 1.00 2716 144 0.1964 0.2508 REMARK 3 10 3.3974 - 3.2802 1.00 2722 126 0.2049 0.2088 REMARK 3 11 3.2802 - 3.1776 1.00 2727 161 0.2031 0.2104 REMARK 3 12 3.1776 - 3.0868 1.00 2677 169 0.2313 0.2705 REMARK 3 13 3.0868 - 3.0056 1.00 2716 152 0.2348 0.2910 REMARK 3 14 3.0056 - 2.9322 1.00 2695 143 0.2510 0.2431 REMARK 3 15 2.9322 - 2.8656 1.00 2698 167 0.2738 0.3279 REMARK 3 16 2.8656 - 2.8046 1.00 2741 144 0.2899 0.3120 REMARK 3 17 2.8046 - 2.7485 0.99 2735 129 0.2999 0.3631 REMARK 3 18 2.7485 - 2.6970 0.70 1869 93 0.2835 0.3002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 54.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.61450 REMARK 3 B22 (A**2) : -11.61450 REMARK 3 B33 (A**2) : 23.22900 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:120) OR (CHAIN C AND RESID 1:2) REMARK 3 ORIGIN FOR THE GROUP (A): -80.6964 28.5940 16.6412 REMARK 3 T TENSOR REMARK 3 T11: 0.4476 T22: 0.4928 REMARK 3 T33: 0.2410 T12: 0.0636 REMARK 3 T13: 0.0370 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.4228 L22: 2.5370 REMARK 3 L33: -1.9213 L12: -0.7813 REMARK 3 L13: 1.5528 L23: 0.2049 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.2416 S13: -0.2945 REMARK 3 S21: -0.3241 S22: -0.1387 S23: 0.2811 REMARK 3 S31: 0.0618 S32: -0.2300 S33: 0.1116 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 121:242) REMARK 3 ORIGIN FOR THE GROUP (A): -54.2220 10.3178 9.4732 REMARK 3 T TENSOR REMARK 3 T11: 0.5073 T22: 0.3226 REMARK 3 T33: 0.7739 T12: -0.0531 REMARK 3 T13: -0.0707 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 0.4214 L22: 0.5676 REMARK 3 L33: 2.5218 L12: -0.3301 REMARK 3 L13: -1.0740 L23: 0.2810 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.0066 S13: 0.5729 REMARK 3 S21: -0.1599 S22: 0.0448 S23: -0.5215 REMARK 3 S31: -0.2436 S32: -0.0035 S33: 0.0197 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 243:384) OR (CHAIN C AND RESID REMARK 3 3:5) REMARK 3 ORIGIN FOR THE GROUP (A): -69.0602 23.3696 24.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.5455 T22: 0.3653 REMARK 3 T33: 0.4080 T12: -0.0332 REMARK 3 T13: -0.0550 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.9741 L22: 2.6345 REMARK 3 L33: 2.2590 L12: -0.9228 REMARK 3 L13: 0.2385 L23: 0.5182 REMARK 3 S TENSOR REMARK 3 S11: -0.1629 S12: -0.2594 S13: -0.0819 REMARK 3 S21: 0.7765 S22: 0.1751 S23: -0.3866 REMARK 3 S31: 0.0833 S32: -0.2759 S33: 0.0038 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 2:121) OR (CHAIN C AND RESID 6) REMARK 3 ORIGIN FOR THE GROUP (A): -76.5036 38.7077 -12.6766 REMARK 3 T TENSOR REMARK 3 T11: 0.4563 T22: 0.6167 REMARK 3 T33: 0.3141 T12: 0.0106 REMARK 3 T13: -0.1068 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 2.4774 L22: 1.9409 REMARK 3 L33: -1.3338 L12: -0.0324 REMARK 3 L13: -1.4255 L23: 0.7363 REMARK 3 S TENSOR REMARK 3 S11: -0.3161 S12: -0.2151 S13: 0.1610 REMARK 3 S21: 0.1767 S22: 0.0390 S23: -0.2762 REMARK 3 S31: 0.0979 S32: -0.2410 S33: 0.1358 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 122:242) REMARK 3 ORIGIN FOR THE GROUP (A): -45.0484 31.9260 -6.7014 REMARK 3 T TENSOR REMARK 3 T11: 0.4228 T22: 0.3065 REMARK 3 T33: 0.7537 T12: -0.0833 REMARK 3 T13: 0.0512 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.6979 L22: 0.3748 REMARK 3 L33: 2.1359 L12: 1.6169 REMARK 3 L13: 0.4488 L23: -0.3147 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: -0.0183 S13: -0.8634 REMARK 3 S21: -0.0736 S22: -0.0812 S23: -0.0147 REMARK 3 S31: 0.1189 S32: -0.1124 S33: 0.0030 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 243:384) OR (CHAIN C AND RESID REMARK 3 8:9) REMARK 3 ORIGIN FOR THE GROUP (A): -65.1805 35.0122 -20.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.5488 T22: 0.4753 REMARK 3 T33: 0.4503 T12: -0.0985 REMARK 3 T13: 0.0215 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 4.6197 L22: 1.0267 REMARK 3 L33: 2.0381 L12: -0.0922 REMARK 3 L13: -0.1360 L23: 0.3785 REMARK 3 S TENSOR REMARK 3 S11: -0.2225 S12: 0.8636 S13: -0.2910 REMARK 3 S21: -0.2165 S22: 0.1365 S23: -0.1915 REMARK 3 S31: -0.0304 S32: -0.2035 S33: 0.0787 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:268 OR RESSEQ REMARK 3 275:384 ) AND (NOT ELEMENT H) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 2:268 OR RESSEQ REMARK 3 275:384 ) AND (NOT ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 3004 REMARK 3 RMSD : 0.030 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3H6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3H5V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 600 MM NAKTARTRATE, 200 MM NACL, 20 MM REMARK 280 NAACETATE, 1 MM EDTA, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.18233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.36467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.77350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.95583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.59117 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ARG A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 ALA A 272 REMARK 465 PRO A 273 REMARK 465 PRO A 274 REMARK 465 SER A 385 REMARK 465 GLN A 386 REMARK 465 LYS A 387 REMARK 465 GLY A 388 REMARK 465 LYS A 389 REMARK 465 LEU A 390 REMARK 465 GLU A 391 REMARK 465 LEU A 392 REMARK 465 VAL A 393 REMARK 465 PRO A 394 REMARK 465 ARG A 395 REMARK 465 THR B 1 REMARK 465 SER B 385 REMARK 465 GLN B 386 REMARK 465 LYS B 387 REMARK 465 GLY B 388 REMARK 465 LYS B 389 REMARK 465 LEU B 390 REMARK 465 GLU B 391 REMARK 465 LEU B 392 REMARK 465 VAL B 393 REMARK 465 PRO B 394 REMARK 465 ARG B 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 381 C2 NAG A 400 2.18 REMARK 500 CG ASN A 244 C1 NAG A 398 2.19 REMARK 500 ND2 ASN A 36 O5 NAG A 396 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -117.56 62.25 REMARK 500 SER A 16 -151.43 -134.76 REMARK 500 PRO A 18 -166.13 -70.11 REMARK 500 LEU A 40 72.66 44.07 REMARK 500 TYR A 55 11.95 82.09 REMARK 500 PHE A 114 54.85 -90.40 REMARK 500 ASP A 146 -70.01 -86.06 REMARK 500 SER A 148 -54.95 -24.48 REMARK 500 PRO A 161 -1.27 -58.19 REMARK 500 ARG A 163 -67.02 -95.07 REMARK 500 ASN A 165 69.45 -110.22 REMARK 500 MET A 217 79.68 -106.19 REMARK 500 PHE A 306 59.79 -141.82 REMARK 500 GLU B 15 -117.63 62.10 REMARK 500 SER B 16 -151.35 -134.56 REMARK 500 PRO B 18 -166.16 -70.10 REMARK 500 LEU B 40 72.60 43.75 REMARK 500 TYR B 55 12.24 81.16 REMARK 500 ASP B 146 -70.12 -86.17 REMARK 500 SER B 148 -54.57 -24.61 REMARK 500 PRO B 161 -0.88 -57.02 REMARK 500 ARG B 163 -67.00 -94.95 REMARK 500 ASN B 165 69.86 -110.04 REMARK 500 ARG B 269 -61.54 -96.64 REMARK 500 ALA B 272 -169.98 -116.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 33 O REMARK 620 2 ASN A 34 O 73.9 REMARK 620 3 ASN A 36 O 81.0 77.7 REMARK 620 4 LEU A 39 O 91.2 154.5 79.7 REMARK 620 5 LEU A 40 O 147.3 137.3 111.0 62.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 33 O REMARK 620 2 ASN B 34 O 73.0 REMARK 620 3 ASN B 36 O 80.6 75.8 REMARK 620 4 LEU B 39 O 92.0 153.5 80.3 REMARK 620 5 LEU B 40 O 148.8 136.8 111.9 63.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H6H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR6 ATD DIMER MPD FORM REMARK 900 RELATED ID: 3H5V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR2 ATD DIMER REMARK 900 RELATED ID: 3H5W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR2 ATD DIMER REMARK 900 RELATED ID: 3C32 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR6 LIGAND BINDING DOMAIN DIMER DBREF 3H6G A 1 389 UNP P42260 GRIK2_RAT 32 420 DBREF 3H6G B 1 389 UNP P42260 GRIK2_RAT 32 420 SEQADV 3H6G LEU A 390 UNP P42260 EXPRESSION TAG SEQADV 3H6G GLU A 391 UNP P42260 EXPRESSION TAG SEQADV 3H6G LEU A 392 UNP P42260 EXPRESSION TAG SEQADV 3H6G VAL A 393 UNP P42260 EXPRESSION TAG SEQADV 3H6G PRO A 394 UNP P42260 EXPRESSION TAG SEQADV 3H6G ARG A 395 UNP P42260 EXPRESSION TAG SEQADV 3H6G LEU B 390 UNP P42260 EXPRESSION TAG SEQADV 3H6G GLU B 391 UNP P42260 EXPRESSION TAG SEQADV 3H6G LEU B 392 UNP P42260 EXPRESSION TAG SEQADV 3H6G VAL B 393 UNP P42260 EXPRESSION TAG SEQADV 3H6G PRO B 394 UNP P42260 EXPRESSION TAG SEQADV 3H6G ARG B 395 UNP P42260 EXPRESSION TAG SEQRES 1 A 395 THR THR HIS VAL LEU ARG PHE GLY GLY ILE PHE GLU TYR SEQRES 2 A 395 VAL GLU SER GLY PRO MET GLY ALA GLU GLU LEU ALA PHE SEQRES 3 A 395 ARG PHE ALA VAL ASN THR ILE ASN ARG ASN ARG THR LEU SEQRES 4 A 395 LEU PRO ASN THR THR LEU THR TYR ASP THR GLN LYS ILE SEQRES 5 A 395 ASN LEU TYR ASP SER PHE GLU ALA SER LYS LYS ALA CYS SEQRES 6 A 395 ASP GLN LEU SER LEU GLY VAL ALA ALA ILE PHE GLY PRO SEQRES 7 A 395 SER HIS SER SER SER ALA ASN ALA VAL GLN SER ILE CYS SEQRES 8 A 395 ASN ALA LEU GLY VAL PRO HIS ILE GLN THR ARG TRP LYS SEQRES 9 A 395 HIS GLN VAL SER ASP ASN LYS ASP SER PHE TYR VAL SER SEQRES 10 A 395 LEU TYR PRO ASP PHE SER SER LEU SER ARG ALA ILE LEU SEQRES 11 A 395 ASP LEU VAL GLN PHE PHE LYS TRP LYS THR VAL THR VAL SEQRES 12 A 395 VAL TYR ASP ASP SER THR GLY LEU ILE ARG LEU GLN GLU SEQRES 13 A 395 LEU ILE LYS ALA PRO SER ARG TYR ASN LEU ARG LEU LYS SEQRES 14 A 395 ILE ARG GLN LEU PRO ALA ASP THR LYS ASP ALA LYS PRO SEQRES 15 A 395 LEU LEU LYS GLU MET LYS ARG GLY LYS GLU PHE HIS VAL SEQRES 16 A 395 ILE PHE ASP CYS SER HIS GLU MET ALA ALA GLY ILE LEU SEQRES 17 A 395 LYS GLN ALA LEU ALA MET GLY MET MET THR GLU TYR TYR SEQRES 18 A 395 HIS TYR ILE PHE THR THR LEU ASP LEU PHE ALA LEU ASP SEQRES 19 A 395 VAL GLU PRO TYR ARG TYR SER GLY VAL ASN MET THR GLY SEQRES 20 A 395 PHE ARG ILE LEU ASN THR GLU ASN THR GLN VAL SER SER SEQRES 21 A 395 ILE ILE GLU LYS TRP SER MET GLU ARG LEU GLN ALA PRO SEQRES 22 A 395 PRO LYS PRO ASP SER GLY LEU LEU ASP GLY PHE MET THR SEQRES 23 A 395 THR ASP ALA ALA LEU MET TYR ASP ALA VAL HIS VAL VAL SEQRES 24 A 395 SER VAL ALA VAL GLN GLN PHE PRO GLN MET THR VAL SER SEQRES 25 A 395 SER LEU GLN CYS ASN ARG HIS LYS PRO TRP ARG PHE GLY SEQRES 26 A 395 THR ARG PHE MET SER LEU ILE LYS GLU ALA HIS TRP GLU SEQRES 27 A 395 GLY LEU THR GLY ARG ILE THR PHE ASN LYS THR ASN GLY SEQRES 28 A 395 LEU ARG THR ASP PHE ASP LEU ASP VAL ILE SER LEU LYS SEQRES 29 A 395 GLU GLU GLY LEU GLU LYS ILE GLY THR TRP ASP PRO ALA SEQRES 30 A 395 SER GLY LEU ASN MET THR GLU SER GLN LYS GLY LYS LEU SEQRES 31 A 395 GLU LEU VAL PRO ARG SEQRES 1 B 395 THR THR HIS VAL LEU ARG PHE GLY GLY ILE PHE GLU TYR SEQRES 2 B 395 VAL GLU SER GLY PRO MET GLY ALA GLU GLU LEU ALA PHE SEQRES 3 B 395 ARG PHE ALA VAL ASN THR ILE ASN ARG ASN ARG THR LEU SEQRES 4 B 395 LEU PRO ASN THR THR LEU THR TYR ASP THR GLN LYS ILE SEQRES 5 B 395 ASN LEU TYR ASP SER PHE GLU ALA SER LYS LYS ALA CYS SEQRES 6 B 395 ASP GLN LEU SER LEU GLY VAL ALA ALA ILE PHE GLY PRO SEQRES 7 B 395 SER HIS SER SER SER ALA ASN ALA VAL GLN SER ILE CYS SEQRES 8 B 395 ASN ALA LEU GLY VAL PRO HIS ILE GLN THR ARG TRP LYS SEQRES 9 B 395 HIS GLN VAL SER ASP ASN LYS ASP SER PHE TYR VAL SER SEQRES 10 B 395 LEU TYR PRO ASP PHE SER SER LEU SER ARG ALA ILE LEU SEQRES 11 B 395 ASP LEU VAL GLN PHE PHE LYS TRP LYS THR VAL THR VAL SEQRES 12 B 395 VAL TYR ASP ASP SER THR GLY LEU ILE ARG LEU GLN GLU SEQRES 13 B 395 LEU ILE LYS ALA PRO SER ARG TYR ASN LEU ARG LEU LYS SEQRES 14 B 395 ILE ARG GLN LEU PRO ALA ASP THR LYS ASP ALA LYS PRO SEQRES 15 B 395 LEU LEU LYS GLU MET LYS ARG GLY LYS GLU PHE HIS VAL SEQRES 16 B 395 ILE PHE ASP CYS SER HIS GLU MET ALA ALA GLY ILE LEU SEQRES 17 B 395 LYS GLN ALA LEU ALA MET GLY MET MET THR GLU TYR TYR SEQRES 18 B 395 HIS TYR ILE PHE THR THR LEU ASP LEU PHE ALA LEU ASP SEQRES 19 B 395 VAL GLU PRO TYR ARG TYR SER GLY VAL ASN MET THR GLY SEQRES 20 B 395 PHE ARG ILE LEU ASN THR GLU ASN THR GLN VAL SER SER SEQRES 21 B 395 ILE ILE GLU LYS TRP SER MET GLU ARG LEU GLN ALA PRO SEQRES 22 B 395 PRO LYS PRO ASP SER GLY LEU LEU ASP GLY PHE MET THR SEQRES 23 B 395 THR ASP ALA ALA LEU MET TYR ASP ALA VAL HIS VAL VAL SEQRES 24 B 395 SER VAL ALA VAL GLN GLN PHE PRO GLN MET THR VAL SER SEQRES 25 B 395 SER LEU GLN CYS ASN ARG HIS LYS PRO TRP ARG PHE GLY SEQRES 26 B 395 THR ARG PHE MET SER LEU ILE LYS GLU ALA HIS TRP GLU SEQRES 27 B 395 GLY LEU THR GLY ARG ILE THR PHE ASN LYS THR ASN GLY SEQRES 28 B 395 LEU ARG THR ASP PHE ASP LEU ASP VAL ILE SER LEU LYS SEQRES 29 B 395 GLU GLU GLY LEU GLU LYS ILE GLY THR TRP ASP PRO ALA SEQRES 30 B 395 SER GLY LEU ASN MET THR GLU SER GLN LYS GLY LYS LEU SEQRES 31 B 395 GLU LEU VAL PRO ARG MODRES 3H6G ASN A 36 ASN GLYCOSYLATION SITE MODRES 3H6G ASN A 42 ASN GLYCOSYLATION SITE MODRES 3H6G ASN A 244 ASN GLYCOSYLATION SITE MODRES 3H6G ASN A 347 ASN GLYCOSYLATION SITE MODRES 3H6G ASN A 381 ASN GLYCOSYLATION SITE MODRES 3H6G ASN B 36 ASN GLYCOSYLATION SITE MODRES 3H6G ASN B 244 ASN GLYCOSYLATION SITE MODRES 3H6G ASN B 347 ASN GLYCOSYLATION SITE HET NAG A 396 14 HET NAG A 397 14 HET NAG A 398 14 HET NAG A 399 14 HET NAG A 400 14 HET TLA A 401 10 HET CA A 402 1 HET NAG B 396 14 HET NAG B 397 14 HET NAG B 398 14 HET TLA B 399 10 HET CA B 400 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM TLA L(+)-TARTARIC ACID HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 8 TLA 2(C4 H6 O6) FORMUL 9 CA 2(CA 2+) FORMUL 15 HOH *44(H2 O) HELIX 1 1 GLY A 20 ASN A 36 1 17 HELIX 2 2 ASP A 56 GLY A 71 1 16 HELIX 3 3 HIS A 80 LEU A 94 1 15 HELIX 4 4 ASP A 121 PHE A 136 1 16 HELIX 5 5 SER A 148 LEU A 154 1 7 HELIX 6 6 LEU A 154 LYS A 159 1 6 HELIX 7 7 ALA A 160 ARG A 163 5 4 HELIX 8 8 ASP A 176 ASP A 179 5 4 HELIX 9 9 ALA A 180 GLY A 190 1 11 HELIX 10 10 SER A 200 MET A 214 1 15 HELIX 11 11 ASP A 229 LEU A 233 5 5 HELIX 12 12 ASN A 255 GLU A 268 1 14 HELIX 13 13 THR A 286 GLN A 305 1 20 HELIX 14 14 PHE A 324 ALA A 335 1 12 HELIX 15 15 GLY B 20 ASN B 36 1 17 HELIX 16 16 ASP B 56 GLY B 71 1 16 HELIX 17 17 HIS B 80 LEU B 94 1 15 HELIX 18 18 ASP B 121 PHE B 136 1 16 HELIX 19 19 SER B 148 LEU B 154 1 7 HELIX 20 20 LEU B 154 LYS B 159 1 6 HELIX 21 21 ALA B 160 ARG B 163 5 4 HELIX 22 22 ASP B 176 ASP B 179 5 4 HELIX 23 23 ALA B 180 GLY B 190 1 11 HELIX 24 24 SER B 200 MET B 214 1 15 HELIX 25 25 ASP B 229 LEU B 233 5 5 HELIX 26 26 ASN B 255 LEU B 270 1 16 HELIX 27 27 THR B 286 GLN B 305 1 20 HELIX 28 28 PHE B 324 GLU B 334 1 11 SHEET 1 A 3 THR A 43 ASN A 53 0 SHEET 2 A 3 HIS A 3 TYR A 13 1 N PHE A 7 O THR A 46 SHEET 3 A 3 ILE A 75 PHE A 76 1 O PHE A 76 N GLY A 8 SHEET 1 B 3 HIS A 98 GLN A 100 0 SHEET 2 B 3 TYR A 115 PRO A 120 1 O LEU A 118 N GLN A 100 SHEET 3 B 3 LEU A 352 ARG A 353 1 O ARG A 353 N SER A 117 SHEET 1 C 8 ARG A 167 GLN A 172 0 SHEET 2 C 8 THR A 140 TYR A 145 1 N VAL A 143 O ARG A 171 SHEET 3 C 8 HIS A 194 ASP A 198 1 O ASP A 198 N VAL A 144 SHEET 4 C 8 HIS A 222 PHE A 225 1 O ILE A 224 N VAL A 195 SHEET 5 C 8 ASN A 244 ARG A 249 1 O ASN A 244 N TYR A 223 SHEET 6 C 8 LEU A 358 LYS A 364 -1 O ASP A 359 N ARG A 249 SHEET 7 C 8 GLY A 367 ASP A 375 -1 O ILE A 371 N VAL A 360 SHEET 8 C 8 GLY A 379 LEU A 380 -1 O GLY A 379 N ASP A 375 SHEET 1 D 2 HIS A 336 GLY A 339 0 SHEET 2 D 2 GLY A 342 THR A 345 -1 O ILE A 344 N TRP A 337 SHEET 1 E 3 THR B 43 ASN B 53 0 SHEET 2 E 3 HIS B 3 TYR B 13 1 N PHE B 7 O THR B 46 SHEET 3 E 3 ILE B 75 PHE B 76 1 O PHE B 76 N GLY B 8 SHEET 1 F 3 HIS B 98 GLN B 100 0 SHEET 2 F 3 TYR B 115 PRO B 120 1 O LEU B 118 N GLN B 100 SHEET 3 F 3 LEU B 352 ARG B 353 1 O ARG B 353 N SER B 117 SHEET 1 G 8 ARG B 167 GLN B 172 0 SHEET 2 G 8 THR B 140 TYR B 145 1 N VAL B 143 O ARG B 171 SHEET 3 G 8 HIS B 194 ASP B 198 1 O ASP B 198 N VAL B 144 SHEET 4 G 8 HIS B 222 PHE B 225 1 O ILE B 224 N VAL B 195 SHEET 5 G 8 ASN B 244 ARG B 249 1 O ASN B 244 N TYR B 223 SHEET 6 G 8 LEU B 358 LYS B 364 -1 O ASP B 359 N ARG B 249 SHEET 7 G 8 GLY B 367 ASP B 375 -1 O ILE B 371 N VAL B 360 SHEET 8 G 8 GLY B 379 LEU B 380 -1 O GLY B 379 N ASP B 375 SHEET 1 H 2 HIS B 336 GLY B 339 0 SHEET 2 H 2 GLY B 342 THR B 345 -1 O ILE B 344 N TRP B 337 SSBOND 1 CYS A 65 CYS A 316 1555 1555 2.06 SSBOND 2 CYS B 65 CYS B 316 1555 1555 2.04 LINK ND2 ASN A 36 C1 NAG A 396 1555 1555 1.44 LINK ND2 ASN A 42 C1 NAG A 397 1555 1555 1.45 LINK ND2 ASN A 244 C1 NAG A 398 1555 1555 1.44 LINK ND2 ASN A 347 C1 NAG A 399 1555 1555 1.44 LINK ND2 ASN A 381 C1 NAG A 400 1555 1555 1.43 LINK ND2 ASN B 36 C1 NAG B 396 1555 1555 1.45 LINK ND2 ASN B 244 C1 NAG B 397 1555 1555 1.44 LINK ND2 ASN B 347 C1 NAG B 398 1555 1555 1.44 LINK O ILE A 33 CA CA A 402 1555 1555 2.53 LINK O ASN A 34 CA CA A 402 1555 1555 2.88 LINK O ASN A 36 CA CA A 402 1555 1555 2.59 LINK O LEU A 39 CA CA A 402 1555 1555 2.66 LINK O LEU A 40 CA CA A 402 1555 1555 2.54 LINK O ILE B 33 CA CA B 400 1555 1555 2.54 LINK O ASN B 34 CA CA B 400 1555 1555 2.89 LINK O ASN B 36 CA CA B 400 1555 1555 2.61 LINK O LEU B 39 CA CA B 400 1555 1555 2.62 LINK O LEU B 40 CA CA B 400 1555 1555 2.50 CISPEP 1 GLY A 17 PRO A 18 0 2.41 CISPEP 2 GLY B 17 PRO B 18 0 2.34 CRYST1 172.074 172.074 111.547 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005811 0.003355 0.000000 0.00000 SCALE2 0.000000 0.006710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008965 0.00000