data_3H8X # _entry.id 3H8X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3H8X pdb_00003h8x 10.2210/pdb3h8x/pdb NDB PD1290 ? ? RCSB RCSB052840 ? ? WWPDB D_1000052840 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-06-04 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_entry_details 8 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 4 'Structure model' '_struct_ref_seq_dif.details' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3H8X _pdbx_database_status.recvd_initial_deposition_date 2009-04-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3H8O . unspecified PDB 3H8R . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lu, L.' 1 'Yi, C.' 2 'Jian, X.' 3 'Zheng, G.' 4 'He, C.' 5 # _citation.id primary _citation.title 'Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 4415 _citation.page_last 4425 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20223766 _citation.pdbx_database_id_DOI 10.1093/nar/gkq129 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, L.' 1 ? primary 'Yi, C.' 2 ? primary 'Jian, X.' 3 ? primary 'Zheng, G.' 4 ? primary 'He, C.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23706.096 1 1.14.11.- 'C67S, C165S, E175C, C192S' 'Residues 56-261' ? 2 polymer syn "5'-D(*CP*TP*GP*TP*(ME6)P*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'" 4008.711 1 ? ? ? ? 3 polymer syn "5'-D(*TP*CP*GP*CP*AP*AP*TP*AP*AP*GP*AP*CP*A)-3'" 3968.626 1 ? ? ? ? 4 water nat water 18.015 177 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPK PWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; ;GSHSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPK PWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(ME6)(DT)(2YR)(DA)(DT)(DT)(DG)(DC)(DG)' CTGTXTXATTGCG B ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DA)(DA)(DT)(DA)(DA)(DG)(DA)(DC)(DA)' TCGCAATAAGACA C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 SER n 1 5 TRP n 1 6 ARG n 1 7 HIS n 1 8 ILE n 1 9 ARG n 1 10 ALA n 1 11 GLU n 1 12 GLY n 1 13 LEU n 1 14 ASP n 1 15 SER n 1 16 SER n 1 17 TYR n 1 18 THR n 1 19 VAL n 1 20 LEU n 1 21 PHE n 1 22 GLY n 1 23 LYS n 1 24 ALA n 1 25 GLU n 1 26 ALA n 1 27 ASP n 1 28 GLU n 1 29 ILE n 1 30 PHE n 1 31 GLN n 1 32 GLU n 1 33 LEU n 1 34 GLU n 1 35 LYS n 1 36 GLU n 1 37 VAL n 1 38 GLU n 1 39 TYR n 1 40 PHE n 1 41 THR n 1 42 GLY n 1 43 ALA n 1 44 LEU n 1 45 ALA n 1 46 ARG n 1 47 VAL n 1 48 GLN n 1 49 VAL n 1 50 PHE n 1 51 GLY n 1 52 LYS n 1 53 TRP n 1 54 HIS n 1 55 SER n 1 56 VAL n 1 57 PRO n 1 58 ARG n 1 59 LYS n 1 60 GLN n 1 61 ALA n 1 62 THR n 1 63 TYR n 1 64 GLY n 1 65 ASP n 1 66 ALA n 1 67 GLY n 1 68 LEU n 1 69 THR n 1 70 TYR n 1 71 THR n 1 72 PHE n 1 73 SER n 1 74 GLY n 1 75 LEU n 1 76 THR n 1 77 LEU n 1 78 SER n 1 79 PRO n 1 80 LYS n 1 81 PRO n 1 82 TRP n 1 83 ILE n 1 84 PRO n 1 85 VAL n 1 86 LEU n 1 87 GLU n 1 88 ARG n 1 89 ILE n 1 90 ARG n 1 91 ASP n 1 92 HIS n 1 93 VAL n 1 94 SER n 1 95 GLY n 1 96 VAL n 1 97 THR n 1 98 GLY n 1 99 GLN n 1 100 THR n 1 101 PHE n 1 102 ASN n 1 103 PHE n 1 104 VAL n 1 105 LEU n 1 106 ILE n 1 107 ASN n 1 108 ARG n 1 109 TYR n 1 110 LYS n 1 111 ASP n 1 112 GLY n 1 113 SER n 1 114 ASP n 1 115 HIS n 1 116 ILE n 1 117 GLY n 1 118 GLU n 1 119 HIS n 1 120 ARG n 1 121 ASP n 1 122 ASP n 1 123 CYS n 1 124 ARG n 1 125 GLU n 1 126 LEU n 1 127 ALA n 1 128 PRO n 1 129 GLY n 1 130 SER n 1 131 PRO n 1 132 ILE n 1 133 ALA n 1 134 SER n 1 135 VAL n 1 136 SER n 1 137 PHE n 1 138 GLY n 1 139 ALA n 1 140 SER n 1 141 ARG n 1 142 ASP n 1 143 PHE n 1 144 VAL n 1 145 PHE n 1 146 ARG n 1 147 HIS n 1 148 LYS n 1 149 ASP n 1 150 SER n 1 151 ARG n 1 152 GLY n 1 153 LYS n 1 154 SER n 1 155 PRO n 1 156 SER n 1 157 ARG n 1 158 ARG n 1 159 VAL n 1 160 ALA n 1 161 VAL n 1 162 VAL n 1 163 ARG n 1 164 LEU n 1 165 PRO n 1 166 LEU n 1 167 ALA n 1 168 HIS n 1 169 GLY n 1 170 SER n 1 171 LEU n 1 172 LEU n 1 173 MET n 1 174 MET n 1 175 ASN n 1 176 HIS n 1 177 PRO n 1 178 THR n 1 179 ASN n 1 180 THR n 1 181 HIS n 1 182 TRP n 1 183 TYR n 1 184 HIS n 1 185 SER n 1 186 LEU n 1 187 PRO n 1 188 VAL n 1 189 ARG n 1 190 LYS n 1 191 LYS n 1 192 VAL n 1 193 LEU n 1 194 ALA n 1 195 PRO n 1 196 ARG n 1 197 VAL n 1 198 ASN n 1 199 LEU n 1 200 THR n 1 201 PHE n 1 202 ARG n 1 203 LYS n 1 204 ILE n 1 205 LEU n 1 206 LEU n 1 207 THR n 1 208 LYS n 1 209 LYS n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 ME6 n 2 6 DT n 2 7 2YR n 2 8 DA n 2 9 DT n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DG n 3 1 DT n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DA n 3 6 DA n 3 7 DT n 3 8 DA n 3 9 DA n 3 10 DG n 3 11 DA n 3 12 DC n 3 13 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ABH2, ALKBH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 ? 3 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 ME6 'DNA linking' n '[(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate' ? 'C10 H17 N3 O7 P 1' 322.232 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 53 ? ? ? A . n A 1 2 SER 2 54 ? ? ? A . n A 1 3 HIS 3 55 55 HIS HIS A . n A 1 4 SER 4 56 56 SER SER A . n A 1 5 TRP 5 57 57 TRP TRP A . n A 1 6 ARG 6 58 58 ARG ARG A . n A 1 7 HIS 7 59 59 HIS HIS A . n A 1 8 ILE 8 60 60 ILE ILE A . n A 1 9 ARG 9 61 61 ARG ARG A . n A 1 10 ALA 10 62 62 ALA ALA A . n A 1 11 GLU 11 63 63 GLU GLU A . n A 1 12 GLY 12 64 64 GLY GLY A . n A 1 13 LEU 13 65 65 LEU LEU A . n A 1 14 ASP 14 66 66 ASP ASP A . n A 1 15 SER 15 67 67 SER SER A . n A 1 16 SER 16 68 68 SER SER A . n A 1 17 TYR 17 69 69 TYR TYR A . n A 1 18 THR 18 70 70 THR THR A . n A 1 19 VAL 19 71 71 VAL VAL A . n A 1 20 LEU 20 72 72 LEU LEU A . n A 1 21 PHE 21 73 73 PHE PHE A . n A 1 22 GLY 22 74 74 GLY GLY A . n A 1 23 LYS 23 75 75 LYS LYS A . n A 1 24 ALA 24 76 76 ALA ALA A . n A 1 25 GLU 25 77 77 GLU GLU A . n A 1 26 ALA 26 78 78 ALA ALA A . n A 1 27 ASP 27 79 79 ASP ASP A . n A 1 28 GLU 28 80 80 GLU GLU A . n A 1 29 ILE 29 81 81 ILE ILE A . n A 1 30 PHE 30 82 82 PHE PHE A . n A 1 31 GLN 31 83 83 GLN GLN A . n A 1 32 GLU 32 84 84 GLU GLU A . n A 1 33 LEU 33 85 85 LEU LEU A . n A 1 34 GLU 34 86 86 GLU GLU A . n A 1 35 LYS 35 87 87 LYS LYS A . n A 1 36 GLU 36 88 88 GLU GLU A . n A 1 37 VAL 37 89 89 VAL VAL A . n A 1 38 GLU 38 90 90 GLU GLU A . n A 1 39 TYR 39 91 91 TYR TYR A . n A 1 40 PHE 40 92 92 PHE PHE A . n A 1 41 THR 41 93 93 THR THR A . n A 1 42 GLY 42 94 94 GLY GLY A . n A 1 43 ALA 43 95 95 ALA ALA A . n A 1 44 LEU 44 96 96 LEU LEU A . n A 1 45 ALA 45 97 97 ALA ALA A . n A 1 46 ARG 46 98 98 ARG ARG A . n A 1 47 VAL 47 99 99 VAL VAL A . n A 1 48 GLN 48 100 100 GLN GLN A . n A 1 49 VAL 49 101 101 VAL VAL A . n A 1 50 PHE 50 102 102 PHE PHE A . n A 1 51 GLY 51 103 103 GLY GLY A . n A 1 52 LYS 52 104 104 LYS LYS A . n A 1 53 TRP 53 105 105 TRP TRP A . n A 1 54 HIS 54 106 106 HIS HIS A . n A 1 55 SER 55 107 107 SER SER A . n A 1 56 VAL 56 108 108 VAL VAL A . n A 1 57 PRO 57 109 109 PRO PRO A . n A 1 58 ARG 58 110 110 ARG ARG A . n A 1 59 LYS 59 111 111 LYS LYS A . n A 1 60 GLN 60 112 112 GLN GLN A . n A 1 61 ALA 61 113 113 ALA ALA A . n A 1 62 THR 62 114 114 THR THR A . n A 1 63 TYR 63 115 115 TYR TYR A . n A 1 64 GLY 64 116 116 GLY GLY A . n A 1 65 ASP 65 117 117 ASP ASP A . n A 1 66 ALA 66 118 118 ALA ALA A . n A 1 67 GLY 67 119 119 GLY GLY A . n A 1 68 LEU 68 120 120 LEU LEU A . n A 1 69 THR 69 121 121 THR THR A . n A 1 70 TYR 70 122 122 TYR TYR A . n A 1 71 THR 71 123 123 THR THR A . n A 1 72 PHE 72 124 124 PHE PHE A . n A 1 73 SER 73 125 125 SER SER A . n A 1 74 GLY 74 126 126 GLY GLY A . n A 1 75 LEU 75 127 127 LEU LEU A . n A 1 76 THR 76 128 128 THR THR A . n A 1 77 LEU 77 129 129 LEU LEU A . n A 1 78 SER 78 130 130 SER SER A . n A 1 79 PRO 79 131 131 PRO PRO A . n A 1 80 LYS 80 132 132 LYS LYS A . n A 1 81 PRO 81 133 133 PRO PRO A . n A 1 82 TRP 82 134 134 TRP TRP A . n A 1 83 ILE 83 135 135 ILE ILE A . n A 1 84 PRO 84 136 136 PRO PRO A . n A 1 85 VAL 85 137 137 VAL VAL A . n A 1 86 LEU 86 138 138 LEU LEU A . n A 1 87 GLU 87 139 139 GLU GLU A . n A 1 88 ARG 88 140 140 ARG ARG A . n A 1 89 ILE 89 141 141 ILE ILE A . n A 1 90 ARG 90 142 142 ARG ARG A . n A 1 91 ASP 91 143 143 ASP ASP A . n A 1 92 HIS 92 144 144 HIS HIS A . n A 1 93 VAL 93 145 145 VAL VAL A . n A 1 94 SER 94 146 146 SER SER A . n A 1 95 GLY 95 147 147 GLY GLY A . n A 1 96 VAL 96 148 148 VAL VAL A . n A 1 97 THR 97 149 149 THR THR A . n A 1 98 GLY 98 150 150 GLY GLY A . n A 1 99 GLN 99 151 151 GLN GLN A . n A 1 100 THR 100 152 152 THR THR A . n A 1 101 PHE 101 153 153 PHE PHE A . n A 1 102 ASN 102 154 154 ASN ASN A . n A 1 103 PHE 103 155 155 PHE PHE A . n A 1 104 VAL 104 156 156 VAL VAL A . n A 1 105 LEU 105 157 157 LEU LEU A . n A 1 106 ILE 106 158 158 ILE ILE A . n A 1 107 ASN 107 159 159 ASN ASN A . n A 1 108 ARG 108 160 160 ARG ARG A . n A 1 109 TYR 109 161 161 TYR TYR A . n A 1 110 LYS 110 162 162 LYS LYS A . n A 1 111 ASP 111 163 163 ASP ASP A . n A 1 112 GLY 112 164 164 GLY GLY A . n A 1 113 SER 113 165 165 SER SER A . n A 1 114 ASP 114 166 166 ASP ASP A . n A 1 115 HIS 115 167 167 HIS HIS A . n A 1 116 ILE 116 168 168 ILE ILE A . n A 1 117 GLY 117 169 169 GLY GLY A . n A 1 118 GLU 118 170 170 GLU GLU A . n A 1 119 HIS 119 171 171 HIS HIS A . n A 1 120 ARG 120 172 172 ARG ARG A . n A 1 121 ASP 121 173 173 ASP ASP A . n A 1 122 ASP 122 174 174 ASP ASP A . n A 1 123 CYS 123 175 175 CYS CYS A . n A 1 124 ARG 124 176 176 ARG ARG A . n A 1 125 GLU 125 177 177 GLU GLU A . n A 1 126 LEU 126 178 178 LEU LEU A . n A 1 127 ALA 127 179 179 ALA ALA A . n A 1 128 PRO 128 180 180 PRO PRO A . n A 1 129 GLY 129 181 181 GLY GLY A . n A 1 130 SER 130 182 182 SER SER A . n A 1 131 PRO 131 183 183 PRO PRO A . n A 1 132 ILE 132 184 184 ILE ILE A . n A 1 133 ALA 133 185 185 ALA ALA A . n A 1 134 SER 134 186 186 SER SER A . n A 1 135 VAL 135 187 187 VAL VAL A . n A 1 136 SER 136 188 188 SER SER A . n A 1 137 PHE 137 189 189 PHE PHE A . n A 1 138 GLY 138 190 190 GLY GLY A . n A 1 139 ALA 139 191 191 ALA ALA A . n A 1 140 SER 140 192 192 SER SER A . n A 1 141 ARG 141 193 193 ARG ARG A . n A 1 142 ASP 142 194 194 ASP ASP A . n A 1 143 PHE 143 195 195 PHE PHE A . n A 1 144 VAL 144 196 196 VAL VAL A . n A 1 145 PHE 145 197 197 PHE PHE A . n A 1 146 ARG 146 198 198 ARG ARG A . n A 1 147 HIS 147 199 199 HIS HIS A . n A 1 148 LYS 148 200 200 LYS LYS A . n A 1 149 ASP 149 201 201 ASP ASP A . n A 1 150 SER 150 202 202 SER SER A . n A 1 151 ARG 151 203 203 ARG ARG A . n A 1 152 GLY 152 204 204 GLY GLY A . n A 1 153 LYS 153 205 205 LYS LYS A . n A 1 154 SER 154 206 206 SER SER A . n A 1 155 PRO 155 207 207 PRO PRO A . n A 1 156 SER 156 208 208 SER SER A . n A 1 157 ARG 157 209 209 ARG ARG A . n A 1 158 ARG 158 210 210 ARG ARG A . n A 1 159 VAL 159 211 211 VAL VAL A . n A 1 160 ALA 160 212 212 ALA ALA A . n A 1 161 VAL 161 213 213 VAL VAL A . n A 1 162 VAL 162 214 214 VAL VAL A . n A 1 163 ARG 163 215 215 ARG ARG A . n A 1 164 LEU 164 216 216 LEU LEU A . n A 1 165 PRO 165 217 217 PRO PRO A . n A 1 166 LEU 166 218 218 LEU LEU A . n A 1 167 ALA 167 219 219 ALA ALA A . n A 1 168 HIS 168 220 220 HIS HIS A . n A 1 169 GLY 169 221 221 GLY GLY A . n A 1 170 SER 170 222 222 SER SER A . n A 1 171 LEU 171 223 223 LEU LEU A . n A 1 172 LEU 172 224 224 LEU LEU A . n A 1 173 MET 173 225 225 MET MET A . n A 1 174 MET 174 226 226 MET MET A . n A 1 175 ASN 175 227 227 ASN ASN A . n A 1 176 HIS 176 228 228 HIS HIS A . n A 1 177 PRO 177 229 229 PRO PRO A . n A 1 178 THR 178 230 230 THR THR A . n A 1 179 ASN 179 231 231 ASN ASN A . n A 1 180 THR 180 232 232 THR THR A . n A 1 181 HIS 181 233 233 HIS HIS A . n A 1 182 TRP 182 234 234 TRP TRP A . n A 1 183 TYR 183 235 235 TYR TYR A . n A 1 184 HIS 184 236 236 HIS HIS A . n A 1 185 SER 185 237 237 SER SER A . n A 1 186 LEU 186 238 238 LEU LEU A . n A 1 187 PRO 187 239 239 PRO PRO A . n A 1 188 VAL 188 240 240 VAL VAL A . n A 1 189 ARG 189 241 241 ARG ARG A . n A 1 190 LYS 190 242 242 LYS LYS A . n A 1 191 LYS 191 243 243 LYS LYS A . n A 1 192 VAL 192 244 244 VAL VAL A . n A 1 193 LEU 193 245 245 LEU LEU A . n A 1 194 ALA 194 246 246 ALA ALA A . n A 1 195 PRO 195 247 247 PRO PRO A . n A 1 196 ARG 196 248 248 ARG ARG A . n A 1 197 VAL 197 249 249 VAL VAL A . n A 1 198 ASN 198 250 250 ASN ASN A . n A 1 199 LEU 199 251 251 LEU LEU A . n A 1 200 THR 200 252 252 THR THR A . n A 1 201 PHE 201 253 253 PHE PHE A . n A 1 202 ARG 202 254 254 ARG ARG A . n A 1 203 LYS 203 255 255 LYS LYS A . n A 1 204 ILE 204 256 256 ILE ILE A . n A 1 205 LEU 205 257 257 LEU LEU A . n A 1 206 LEU 206 258 258 LEU LEU A . n A 1 207 THR 207 259 ? ? ? A . n A 1 208 LYS 208 260 ? ? ? A . n A 1 209 LYS 209 261 ? ? ? A . n B 2 1 DC 1 259 259 DC DC B . n B 2 2 DT 2 260 260 DT DT B . n B 2 3 DG 3 261 261 DG DG B . n B 2 4 DT 4 262 262 DT DT B . n B 2 5 ME6 5 263 263 ME6 ME6 B . n B 2 6 DT 6 264 264 DT DT B . n B 2 7 2YR 7 265 265 2YR DC B . n B 2 8 DA 8 266 266 DA DA B . n B 2 9 DT 9 267 267 DT DT B . n B 2 10 DT 10 268 268 DT DT B . n B 2 11 DG 11 269 269 DG DG B . n B 2 12 DC 12 270 270 DC DC B . n B 2 13 DG 13 271 271 DG DG B . n C 3 1 DT 1 272 272 DT DT C . n C 3 2 DC 2 273 273 DC DC C . n C 3 3 DG 3 274 274 DG DG C . n C 3 4 DC 4 275 275 DC DC C . n C 3 5 DA 5 276 276 DA DA C . n C 3 6 DA 6 277 277 DA DA C . n C 3 7 DT 7 278 278 DT DT C . n C 3 8 DA 8 279 279 DA DA C . n C 3 9 DA 9 280 280 DA DA C . n C 3 10 DG 10 281 281 DG DG C . n C 3 11 DA 11 282 282 DA DA C . n C 3 12 DC 12 283 283 DC DC C . n C 3 13 DA 13 284 284 DA DA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 301 2 HOH HOH A . D 4 HOH 2 302 3 HOH HOH A . D 4 HOH 3 303 4 HOH HOH A . D 4 HOH 4 304 6 HOH HOH A . D 4 HOH 5 305 7 HOH HOH A . D 4 HOH 6 306 8 HOH HOH A . D 4 HOH 7 307 9 HOH HOH A . D 4 HOH 8 308 10 HOH HOH A . D 4 HOH 9 309 11 HOH HOH A . D 4 HOH 10 310 12 HOH HOH A . D 4 HOH 11 311 13 HOH HOH A . D 4 HOH 12 312 14 HOH HOH A . D 4 HOH 13 313 15 HOH HOH A . D 4 HOH 14 314 16 HOH HOH A . D 4 HOH 15 315 17 HOH HOH A . D 4 HOH 16 316 18 HOH HOH A . D 4 HOH 17 317 19 HOH HOH A . D 4 HOH 18 318 20 HOH HOH A . D 4 HOH 19 319 21 HOH HOH A . D 4 HOH 20 320 22 HOH HOH A . D 4 HOH 21 321 24 HOH HOH A . D 4 HOH 22 322 25 HOH HOH A . D 4 HOH 23 323 26 HOH HOH A . D 4 HOH 24 324 27 HOH HOH A . D 4 HOH 25 325 30 HOH HOH A . D 4 HOH 26 326 31 HOH HOH A . D 4 HOH 27 327 32 HOH HOH A . D 4 HOH 28 328 33 HOH HOH A . D 4 HOH 29 329 34 HOH HOH A . D 4 HOH 30 330 35 HOH HOH A . D 4 HOH 31 331 36 HOH HOH A . D 4 HOH 32 332 38 HOH HOH A . D 4 HOH 33 333 40 HOH HOH A . D 4 HOH 34 334 41 HOH HOH A . D 4 HOH 35 335 42 HOH HOH A . D 4 HOH 36 336 43 HOH HOH A . D 4 HOH 37 337 44 HOH HOH A . D 4 HOH 38 338 45 HOH HOH A . D 4 HOH 39 339 46 HOH HOH A . D 4 HOH 40 340 47 HOH HOH A . D 4 HOH 41 341 48 HOH HOH A . D 4 HOH 42 342 49 HOH HOH A . D 4 HOH 43 343 50 HOH HOH A . D 4 HOH 44 344 52 HOH HOH A . D 4 HOH 45 345 262 HOH HOH A . D 4 HOH 46 346 263 HOH HOH A . D 4 HOH 47 347 264 HOH HOH A . D 4 HOH 48 348 265 HOH HOH A . D 4 HOH 49 349 266 HOH HOH A . D 4 HOH 50 350 267 HOH HOH A . D 4 HOH 51 351 268 HOH HOH A . D 4 HOH 52 352 269 HOH HOH A . D 4 HOH 53 353 270 HOH HOH A . D 4 HOH 54 354 271 HOH HOH A . D 4 HOH 55 355 272 HOH HOH A . D 4 HOH 56 356 273 HOH HOH A . D 4 HOH 57 357 274 HOH HOH A . D 4 HOH 58 358 275 HOH HOH A . D 4 HOH 59 359 276 HOH HOH A . D 4 HOH 60 360 277 HOH HOH A . D 4 HOH 61 361 278 HOH HOH A . D 4 HOH 62 362 279 HOH HOH A . D 4 HOH 63 363 280 HOH HOH A . D 4 HOH 64 364 281 HOH HOH A . D 4 HOH 65 365 282 HOH HOH A . D 4 HOH 66 366 283 HOH HOH A . D 4 HOH 67 367 284 HOH HOH A . D 4 HOH 68 368 285 HOH HOH A . D 4 HOH 69 369 286 HOH HOH A . D 4 HOH 70 370 287 HOH HOH A . D 4 HOH 71 371 288 HOH HOH A . D 4 HOH 72 372 289 HOH HOH A . D 4 HOH 73 373 290 HOH HOH A . D 4 HOH 74 374 291 HOH HOH A . D 4 HOH 75 375 292 HOH HOH A . D 4 HOH 76 376 293 HOH HOH A . D 4 HOH 77 377 294 HOH HOH A . D 4 HOH 78 378 295 HOH HOH A . D 4 HOH 79 379 296 HOH HOH A . D 4 HOH 80 380 297 HOH HOH A . D 4 HOH 81 381 298 HOH HOH A . D 4 HOH 82 382 299 HOH HOH A . D 4 HOH 83 383 300 HOH HOH A . D 4 HOH 84 384 301 HOH HOH A . D 4 HOH 85 385 302 HOH HOH A . D 4 HOH 86 386 303 HOH HOH A . D 4 HOH 87 387 304 HOH HOH A . D 4 HOH 88 388 305 HOH HOH A . D 4 HOH 89 389 306 HOH HOH A . D 4 HOH 90 390 307 HOH HOH A . D 4 HOH 91 391 308 HOH HOH A . D 4 HOH 92 392 309 HOH HOH A . D 4 HOH 93 393 310 HOH HOH A . D 4 HOH 94 394 311 HOH HOH A . D 4 HOH 95 395 259 HOH HOH A . D 4 HOH 96 396 313 HOH HOH A . D 4 HOH 97 397 314 HOH HOH A . D 4 HOH 98 398 315 HOH HOH A . D 4 HOH 99 399 316 HOH HOH A . D 4 HOH 100 400 317 HOH HOH A . D 4 HOH 101 401 318 HOH HOH A . D 4 HOH 102 402 319 HOH HOH A . D 4 HOH 103 403 320 HOH HOH A . D 4 HOH 104 404 321 HOH HOH A . D 4 HOH 105 405 322 HOH HOH A . D 4 HOH 106 406 323 HOH HOH A . D 4 HOH 107 407 324 HOH HOH A . D 4 HOH 108 408 325 HOH HOH A . D 4 HOH 109 409 326 HOH HOH A . D 4 HOH 110 410 327 HOH HOH A . D 4 HOH 111 411 328 HOH HOH A . D 4 HOH 112 412 329 HOH HOH A . D 4 HOH 113 413 330 HOH HOH A . D 4 HOH 114 414 331 HOH HOH A . D 4 HOH 115 415 332 HOH HOH A . D 4 HOH 116 416 333 HOH HOH A . D 4 HOH 117 417 334 HOH HOH A . D 4 HOH 118 418 335 HOH HOH A . D 4 HOH 119 419 336 HOH HOH A . D 4 HOH 120 420 337 HOH HOH A . D 4 HOH 121 421 338 HOH HOH A . D 4 HOH 122 422 339 HOH HOH A . D 4 HOH 123 423 340 HOH HOH A . D 4 HOH 124 424 341 HOH HOH A . D 4 HOH 125 425 342 HOH HOH A . D 4 HOH 126 426 343 HOH HOH A . D 4 HOH 127 427 344 HOH HOH A . D 4 HOH 128 428 345 HOH HOH A . D 4 HOH 129 429 346 HOH HOH A . D 4 HOH 130 430 347 HOH HOH A . D 4 HOH 131 431 348 HOH HOH A . D 4 HOH 132 432 349 HOH HOH A . D 4 HOH 133 433 260 HOH HOH A . D 4 HOH 134 434 261 HOH HOH A . E 4 HOH 1 301 5 HOH HOH B . E 4 HOH 2 302 23 HOH HOH B . E 4 HOH 3 303 28 HOH HOH B . E 4 HOH 4 304 29 HOH HOH B . E 4 HOH 5 305 37 HOH HOH B . E 4 HOH 6 306 39 HOH HOH B . E 4 HOH 7 307 57 HOH HOH B . E 4 HOH 8 308 68 HOH HOH B . E 4 HOH 9 309 70 HOH HOH B . E 4 HOH 10 310 74 HOH HOH B . E 4 HOH 11 311 79 HOH HOH B . E 4 HOH 12 312 89 HOH HOH B . E 4 HOH 13 313 117 HOH HOH B . E 4 HOH 14 314 120 HOH HOH B . E 4 HOH 15 315 131 HOH HOH B . E 4 HOH 16 316 135 HOH HOH B . E 4 HOH 17 317 157 HOH HOH B . E 4 HOH 18 318 165 HOH HOH B . E 4 HOH 19 319 166 HOH HOH B . E 4 HOH 20 320 179 HOH HOH B . F 4 HOH 1 301 1 HOH HOH C . F 4 HOH 2 302 64 HOH HOH C . F 4 HOH 3 303 66 HOH HOH C . F 4 HOH 4 304 98 HOH HOH C . F 4 HOH 5 305 99 HOH HOH C . F 4 HOH 6 306 108 HOH HOH C . F 4 HOH 7 307 113 HOH HOH C . F 4 HOH 8 308 116 HOH HOH C . F 4 HOH 9 309 118 HOH HOH C . F 4 HOH 10 310 121 HOH HOH C . F 4 HOH 11 311 123 HOH HOH C . F 4 HOH 12 312 124 HOH HOH C . F 4 HOH 13 313 132 HOH HOH C . F 4 HOH 14 314 134 HOH HOH C . F 4 HOH 15 315 140 HOH HOH C . F 4 HOH 16 316 142 HOH HOH C . F 4 HOH 17 317 155 HOH HOH C . F 4 HOH 18 318 161 HOH HOH C . F 4 HOH 19 319 164 HOH HOH C . F 4 HOH 20 320 169 HOH HOH C . F 4 HOH 21 321 170 HOH HOH C . F 4 HOH 22 322 171 HOH HOH C . F 4 HOH 23 323 172 HOH HOH C . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id C _pdbx_unobs_or_zero_occ_atoms.auth_comp_id DA _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 279 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id C8 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id C _pdbx_unobs_or_zero_occ_atoms.label_comp_id DA _pdbx_unobs_or_zero_occ_atoms.label_seq_id 8 _pdbx_unobs_or_zero_occ_atoms.label_atom_id C8 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.4.0073 ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # _cell.entry_id 3H8X _cell.length_a 79.110 _cell.length_b 79.110 _cell.length_c 242.270 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3H8X _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3H8X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.50 _exptl_crystal.density_percent_sol 64.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.1 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 5000, NaCl, MgCl2, Cacodylate buffer, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-08-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3H8X _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 68.520 _reflns.d_resolution_high 1.950 _reflns.number_obs 31492 _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 21.100 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3H8X _refine.ls_number_reflns_obs 31492 _refine.ls_number_reflns_all 32037 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 68.52 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 98.3 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.205 _refine.ls_R_factor_R_free 0.236 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1688 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 36.55 _refine.aniso_B[1][1] 0.66000 _refine.aniso_B[2][2] 0.66000 _refine.aniso_B[3][3] -0.99000 _refine.aniso_B[1][2] 0.33000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.137 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.094 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.343 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1640 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 2344 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 68.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 2365 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.575 2.264 ? 3331 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.146 5.000 ? 209 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26.512 21.500 ? 80 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.334 15.000 ? 284 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.804 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.099 0.200 ? 361 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1616 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.744 1.500 ? 1027 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.354 2.000 ? 1662 'X-RAY DIFFRACTION' ? r_scbond_it 1.790 3.000 ? 1338 'X-RAY DIFFRACTION' ? r_scangle_it 2.844 4.500 ? 1666 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 1825 _refine_ls_shell.R_factor_R_work 0.2820 _refine_ls_shell.percent_reflns_obs 78.64 _refine_ls_shell.R_factor_R_free 0.2790 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 90 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3H8X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3H8X _struct.title 'Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3H8X _struct_keywords.pdbx_keywords OXIDOREDUCTASE/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, Dioxygenase, DNA damage, DNA repair, Iron, Metal-binding, Nucleus, OXIDOREDUCTASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 1 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; 56 ? 2 PDB 3H8X 3H8X 2 CTGTATCATAGCG ? ? 3 PDB 3H8X 3H8X 3 TCGCTATAATACA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3H8X A 4 ? 209 ? Q6NS38 56 ? 261 ? 56 261 2 2 3H8X B 1 ? 13 ? 3H8X 259 ? 271 ? 259 271 3 3 3H8X C 1 ? 13 ? 3H8X 272 ? 284 ? 272 284 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3H8X GLY A 1 ? UNP Q6NS38 ? ? 'expression tag' 53 1 1 3H8X SER A 2 ? UNP Q6NS38 ? ? 'expression tag' 54 2 1 3H8X HIS A 3 ? UNP Q6NS38 ? ? 'expression tag' 55 3 1 3H8X SER A 15 ? UNP Q6NS38 CYS 67 'engineered mutation' 67 4 1 3H8X SER A 113 ? UNP Q6NS38 CYS 165 'engineered mutation' 165 5 1 3H8X CYS A 123 ? UNP Q6NS38 GLU 175 'engineered mutation' 175 6 1 3H8X SER A 140 ? UNP Q6NS38 CYS 192 'engineered mutation' 192 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3530 ? 1 MORE -16 ? 1 'SSA (A^2)' 13240 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 22 ? VAL A 37 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 THR A 41 ? LEU A 44 ? THR A 93 LEU A 96 5 ? 4 HELX_P HELX_P3 3 ILE A 83 ? GLY A 98 ? ILE A 135 GLY A 150 1 ? 16 HELX_P HELX_P4 4 ASP A 149 ? ARG A 151 ? ASP A 201 ARG A 203 5 ? 3 HELX_P HELX_P5 5 PRO A 177 ? HIS A 181 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 123 SG ? ? ? 1_555 B 2YR 7 S ? ? A CYS 175 B 2YR 265 1_555 ? ? ? ? ? ? ? 1.976 ? ? covale2 covale both ? B DT 4 "O3'" A ? ? 1_555 B ME6 5 P ? ? B DT 262 B ME6 263 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? B DT 4 "O3'" B ? ? 1_555 B ME6 5 P ? ? B DT 262 B ME6 263 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? B ME6 5 "O3'" ? ? ? 1_555 B DT 6 P ? ? B ME6 263 B DT 264 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale5 covale both ? B DT 6 "O3'" ? ? ? 1_555 B 2YR 7 P ? ? B DT 264 B 2YR 265 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale6 covale both ? B 2YR 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B 2YR 265 B DA 266 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? B DT 2 N3 A ? ? 1_555 C DA 13 N1 ? ? B DT 260 C DA 284 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 A ? ? 1_555 C DA 13 N6 ? ? B DT 260 C DA 284 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 N1 A ? ? 1_555 C DC 12 N3 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N2 A ? ? 1_555 C DC 12 O2 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 O6 A ? ? 1_555 C DC 12 N4 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 N3 A ? ? 1_555 C DA 11 N1 ? ? B DT 262 C DA 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 O4 A ? ? 1_555 C DA 11 N6 ? ? B DT 262 C DA 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 264 C DA 279 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog9 hydrog ? ? B DT 6 O2 ? ? ? 1_555 C DA 8 N6 ? ? B DT 264 C DA 279 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog10 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 267 C DA 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 267 C DA 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id 2YR _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 7 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 123 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id 2YR _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 265 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 175 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom S _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id 2YR _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 176 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 177 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 6 ? ALA A 10 ? ARG A 58 ALA A 62 A 2 LEU A 13 ? VAL A 19 ? LEU A 65 VAL A 71 A 3 SER A 170 ? ASN A 175 ? SER A 222 ASN A 227 A 4 ILE A 132 ? GLY A 138 ? ILE A 184 GLY A 190 A 5 ARG A 196 ? ARG A 202 ? ARG A 248 ARG A 254 A 6 PHE A 103 ? TYR A 109 ? PHE A 155 TYR A 161 A 7 LYS A 59 ? GLY A 64 ? LYS A 111 GLY A 116 B 1 ARG A 46 ? VAL A 49 ? ARG A 98 VAL A 101 B 2 LYS A 52 ? SER A 55 ? LYS A 104 SER A 107 C 1 TYR A 70 ? PHE A 72 ? TYR A 122 PHE A 124 C 2 LEU A 75 ? LEU A 77 ? LEU A 127 LEU A 129 D 1 ILE A 116 ? HIS A 119 ? ILE A 168 HIS A 171 D 2 TRP A 182 ? LEU A 186 ? TRP A 234 LEU A 238 D 3 ARG A 141 ? HIS A 147 ? ARG A 193 HIS A 199 D 4 VAL A 162 ? LEU A 166 ? VAL A 214 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 6 ? N ARG A 58 O TYR A 17 ? O TYR A 69 A 2 3 N THR A 18 ? N THR A 70 O LEU A 171 ? O LEU A 223 A 3 4 O LEU A 172 ? O LEU A 224 N SER A 134 ? N SER A 186 A 4 5 N VAL A 135 ? N VAL A 187 O LEU A 199 ? O LEU A 251 A 5 6 O ASN A 198 ? O ASN A 250 N ASN A 107 ? N ASN A 159 A 6 7 O VAL A 104 ? O VAL A 156 N TYR A 63 ? N TYR A 115 B 1 2 N VAL A 47 ? N VAL A 99 O HIS A 54 ? O HIS A 106 C 1 2 N TYR A 70 ? N TYR A 122 O LEU A 77 ? O LEU A 129 D 1 2 N HIS A 119 ? N HIS A 171 O HIS A 184 ? O HIS A 236 D 2 3 O TYR A 183 ? O TYR A 235 N ARG A 146 ? N ARG A 198 D 3 4 N PHE A 145 ? N PHE A 197 O VAL A 162 ? O VAL A 214 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id 2YR _struct_site.pdbx_auth_seq_id 265 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE 2YR B 265' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TYR A 70 ? TYR A 122 . ? 1_555 ? 2 AC1 14 PHE A 72 ? PHE A 124 . ? 1_555 ? 3 AC1 14 SER A 73 ? SER A 125 . ? 1_555 ? 4 AC1 14 ILE A 116 ? ILE A 168 . ? 1_555 ? 5 AC1 14 GLY A 117 ? GLY A 169 . ? 1_555 ? 6 AC1 14 GLU A 118 ? GLU A 170 . ? 1_555 ? 7 AC1 14 HIS A 119 ? HIS A 171 . ? 1_555 ? 8 AC1 14 CYS A 123 ? CYS A 175 . ? 1_555 ? 9 AC1 14 HOH D . ? HOH A 325 . ? 1_555 ? 10 AC1 14 HOH D . ? HOH A 355 . ? 1_555 ? 11 AC1 14 DT B 6 ? DT B 264 . ? 1_555 ? 12 AC1 14 DA B 8 ? DA B 266 . ? 1_555 ? 13 AC1 14 HOH E . ? HOH B 304 . ? 1_555 ? 14 AC1 14 HOH E . ? HOH B 317 . ? 1_555 ? # _pdbx_entry_details.entry_id 3H8X _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 261 ? B "C1'" B DG 261 ? B N9 B DG 261 ? B 110.23 108.30 1.93 0.30 N 2 1 C5 B DT 264 ? ? C4 B DT 264 ? ? O4 B DT 264 ? ? 120.12 124.90 -4.78 0.70 N 3 1 "O4'" B DA 266 ? ? "C1'" B DA 266 ? ? N9 B DA 266 ? ? 110.52 108.30 2.22 0.30 N 4 1 "O4'" C DT 272 ? ? "C1'" C DT 272 ? ? N1 C DT 272 ? ? 103.40 108.00 -4.60 0.70 N 5 1 "O4'" C DT 278 ? ? "C1'" C DT 278 ? ? N1 C DT 278 ? ? 110.25 108.30 1.95 0.30 N 6 1 "O4'" C DA 280 ? ? "C1'" C DA 280 ? ? N9 C DA 280 ? ? 110.20 108.30 1.90 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 110 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 177.48 _pdbx_validate_torsion.psi -172.32 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ME6 _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id ME6 _pdbx_struct_mod_residue.auth_seq_id 263 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 419 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 8.3810 26.3340 -0.4440 -0.0922 -0.0571 0.0616 0.0198 -0.0164 -0.0506 3.5974 2.0371 0.9282 1.4447 -0.0285 0.2489 0.1694 0.2448 -0.2366 -0.0422 0.0075 -0.2676 0.0930 0.0037 -0.1768 'X-RAY DIFFRACTION' 2 ? refined -9.0410 12.9940 4.7130 0.2193 -0.0176 0.0970 -0.0748 -0.2041 -0.0050 5.0143 1.5815 6.3547 0.9585 5.0014 0.4468 1.1020 -0.1237 -0.8920 0.1064 -0.2694 -0.3661 1.3140 -0.1504 -0.8326 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 53 ? ? A 258 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 259 ? ? B 271 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 C 272 ? ? C 284 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 53 ? A GLY 1 2 1 Y 1 A SER 54 ? A SER 2 3 1 Y 1 A THR 259 ? A THR 207 4 1 Y 1 A LYS 260 ? A LYS 208 5 1 Y 1 A LYS 261 ? A LYS 209 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2YR P P N N 1 2YR OP1 O N N 2 2YR OP2 O N N 3 2YR "O5'" O N N 4 2YR "C5'" C N N 5 2YR "C4'" C N R 6 2YR "O4'" O N N 7 2YR "C3'" C N S 8 2YR "O3'" O N N 9 2YR "C2'" C N N 10 2YR "C1'" C N R 11 2YR N1 N N N 12 2YR C2 C N N 13 2YR O2 O N N 14 2YR N3 N N N 15 2YR C4 C N N 16 2YR N4 N N N 17 2YR C5 C N N 18 2YR C6 C N N 19 2YR S S N N 20 2YR C8 C N N 21 2YR C9 C N N 22 2YR H2 H N N 23 2YR H3 H N N 24 2YR H4 H N N 25 2YR H5 H N N 26 2YR H6 H N N 27 2YR H7 H N N 28 2YR H8 H N N 29 2YR H9 H N N 30 2YR H10 H N N 31 2YR H11 H N N 32 2YR H12 H N N 33 2YR H13 H N N 34 2YR H14 H N N 35 2YR H15 H N N 36 2YR H16 H N N 37 2YR H17 H N N 38 2YR H18 H N N 39 2YR OP3 O N N 40 2YR H20 H N N 41 ALA N N N N 42 ALA CA C N S 43 ALA C C N N 44 ALA O O N N 45 ALA CB C N N 46 ALA OXT O N N 47 ALA H H N N 48 ALA H2 H N N 49 ALA HA H N N 50 ALA HB1 H N N 51 ALA HB2 H N N 52 ALA HB3 H N N 53 ALA HXT H N N 54 ARG N N N N 55 ARG CA C N S 56 ARG C C N N 57 ARG O O N N 58 ARG CB C N N 59 ARG CG C N N 60 ARG CD C N N 61 ARG NE N N N 62 ARG CZ C N N 63 ARG NH1 N N N 64 ARG NH2 N N N 65 ARG OXT O N N 66 ARG H H N N 67 ARG H2 H N N 68 ARG HA H N N 69 ARG HB2 H N N 70 ARG HB3 H N N 71 ARG HG2 H N N 72 ARG HG3 H N N 73 ARG HD2 H N N 74 ARG HD3 H N N 75 ARG HE H N N 76 ARG HH11 H N N 77 ARG HH12 H N N 78 ARG HH21 H N N 79 ARG HH22 H N N 80 ARG HXT H N N 81 ASN N N N N 82 ASN CA C N S 83 ASN C C N N 84 ASN O O N N 85 ASN CB C N N 86 ASN CG C N N 87 ASN OD1 O N N 88 ASN ND2 N N N 89 ASN OXT O N N 90 ASN H H N N 91 ASN H2 H N N 92 ASN HA H N N 93 ASN HB2 H N N 94 ASN HB3 H N N 95 ASN HD21 H N N 96 ASN HD22 H N N 97 ASN HXT H N N 98 ASP N N N N 99 ASP CA C N S 100 ASP C C N N 101 ASP O O N N 102 ASP CB C N N 103 ASP CG C N N 104 ASP OD1 O N N 105 ASP OD2 O N N 106 ASP OXT O N N 107 ASP H H N N 108 ASP H2 H N N 109 ASP HA H N N 110 ASP HB2 H N N 111 ASP HB3 H N N 112 ASP HD2 H N N 113 ASP HXT H N N 114 CYS N N N N 115 CYS CA C N R 116 CYS C C N N 117 CYS O O N N 118 CYS CB C N N 119 CYS SG S N N 120 CYS OXT O N N 121 CYS H H N N 122 CYS H2 H N N 123 CYS HA H N N 124 CYS HB2 H N N 125 CYS HB3 H N N 126 CYS HG H N N 127 CYS HXT H N N 128 DA OP3 O N N 129 DA P P N N 130 DA OP1 O N N 131 DA OP2 O N N 132 DA "O5'" O N N 133 DA "C5'" C N N 134 DA "C4'" C N R 135 DA "O4'" O N N 136 DA "C3'" C N S 137 DA "O3'" O N N 138 DA "C2'" C N N 139 DA "C1'" C N R 140 DA N9 N Y N 141 DA C8 C Y N 142 DA N7 N Y N 143 DA C5 C Y N 144 DA C6 C Y N 145 DA N6 N N N 146 DA N1 N Y N 147 DA C2 C Y N 148 DA N3 N Y N 149 DA C4 C Y N 150 DA HOP3 H N N 151 DA HOP2 H N N 152 DA "H5'" H N N 153 DA "H5''" H N N 154 DA "H4'" H N N 155 DA "H3'" H N N 156 DA "HO3'" H N N 157 DA "H2'" H N N 158 DA "H2''" H N N 159 DA "H1'" H N N 160 DA H8 H N N 161 DA H61 H N N 162 DA H62 H N N 163 DA H2 H N N 164 DC OP3 O N N 165 DC P P N N 166 DC OP1 O N N 167 DC OP2 O N N 168 DC "O5'" O N N 169 DC "C5'" C N N 170 DC "C4'" C N R 171 DC "O4'" O N N 172 DC "C3'" C N S 173 DC "O3'" O N N 174 DC "C2'" C N N 175 DC "C1'" C N R 176 DC N1 N N N 177 DC C2 C N N 178 DC O2 O N N 179 DC N3 N N N 180 DC C4 C N N 181 DC N4 N N N 182 DC C5 C N N 183 DC C6 C N N 184 DC HOP3 H N N 185 DC HOP2 H N N 186 DC "H5'" H N N 187 DC "H5''" H N N 188 DC "H4'" H N N 189 DC "H3'" H N N 190 DC "HO3'" H N N 191 DC "H2'" H N N 192 DC "H2''" H N N 193 DC "H1'" H N N 194 DC H41 H N N 195 DC H42 H N N 196 DC H5 H N N 197 DC H6 H N N 198 DG OP3 O N N 199 DG P P N N 200 DG OP1 O N N 201 DG OP2 O N N 202 DG "O5'" O N N 203 DG "C5'" C N N 204 DG "C4'" C N R 205 DG "O4'" O N N 206 DG "C3'" C N S 207 DG "O3'" O N N 208 DG "C2'" C N N 209 DG "C1'" C N R 210 DG N9 N Y N 211 DG C8 C Y N 212 DG N7 N Y N 213 DG C5 C Y N 214 DG C6 C N N 215 DG O6 O N N 216 DG N1 N N N 217 DG C2 C N N 218 DG N2 N N N 219 DG N3 N N N 220 DG C4 C Y N 221 DG HOP3 H N N 222 DG HOP2 H N N 223 DG "H5'" H N N 224 DG "H5''" H N N 225 DG "H4'" H N N 226 DG "H3'" H N N 227 DG "HO3'" H N N 228 DG "H2'" H N N 229 DG "H2''" H N N 230 DG "H1'" H N N 231 DG H8 H N N 232 DG H1 H N N 233 DG H21 H N N 234 DG H22 H N N 235 DT OP3 O N N 236 DT P P N N 237 DT OP1 O N N 238 DT OP2 O N N 239 DT "O5'" O N N 240 DT "C5'" C N N 241 DT "C4'" C N R 242 DT "O4'" O N N 243 DT "C3'" C N S 244 DT "O3'" O N N 245 DT "C2'" C N N 246 DT "C1'" C N R 247 DT N1 N N N 248 DT C2 C N N 249 DT O2 O N N 250 DT N3 N N N 251 DT C4 C N N 252 DT O4 O N N 253 DT C5 C N N 254 DT C7 C N N 255 DT C6 C N N 256 DT HOP3 H N N 257 DT HOP2 H N N 258 DT "H5'" H N N 259 DT "H5''" H N N 260 DT "H4'" H N N 261 DT "H3'" H N N 262 DT "HO3'" H N N 263 DT "H2'" H N N 264 DT "H2''" H N N 265 DT "H1'" H N N 266 DT H3 H N N 267 DT H71 H N N 268 DT H72 H N N 269 DT H73 H N N 270 DT H6 H N N 271 GLN N N N N 272 GLN CA C N S 273 GLN C C N N 274 GLN O O N N 275 GLN CB C N N 276 GLN CG C N N 277 GLN CD C N N 278 GLN OE1 O N N 279 GLN NE2 N N N 280 GLN OXT O N N 281 GLN H H N N 282 GLN H2 H N N 283 GLN HA H N N 284 GLN HB2 H N N 285 GLN HB3 H N N 286 GLN HG2 H N N 287 GLN HG3 H N N 288 GLN HE21 H N N 289 GLN HE22 H N N 290 GLN HXT H N N 291 GLU N N N N 292 GLU CA C N S 293 GLU C C N N 294 GLU O O N N 295 GLU CB C N N 296 GLU CG C N N 297 GLU CD C N N 298 GLU OE1 O N N 299 GLU OE2 O N N 300 GLU OXT O N N 301 GLU H H N N 302 GLU H2 H N N 303 GLU HA H N N 304 GLU HB2 H N N 305 GLU HB3 H N N 306 GLU HG2 H N N 307 GLU HG3 H N N 308 GLU HE2 H N N 309 GLU HXT H N N 310 GLY N N N N 311 GLY CA C N N 312 GLY C C N N 313 GLY O O N N 314 GLY OXT O N N 315 GLY H H N N 316 GLY H2 H N N 317 GLY HA2 H N N 318 GLY HA3 H N N 319 GLY HXT H N N 320 HIS N N N N 321 HIS CA C N S 322 HIS C C N N 323 HIS O O N N 324 HIS CB C N N 325 HIS CG C Y N 326 HIS ND1 N Y N 327 HIS CD2 C Y N 328 HIS CE1 C Y N 329 HIS NE2 N Y N 330 HIS OXT O N N 331 HIS H H N N 332 HIS H2 H N N 333 HIS HA H N N 334 HIS HB2 H N N 335 HIS HB3 H N N 336 HIS HD1 H N N 337 HIS HD2 H N N 338 HIS HE1 H N N 339 HIS HE2 H N N 340 HIS HXT H N N 341 HOH O O N N 342 HOH H1 H N N 343 HOH H2 H N N 344 ILE N N N N 345 ILE CA C N S 346 ILE C C N N 347 ILE O O N N 348 ILE CB C N S 349 ILE CG1 C N N 350 ILE CG2 C N N 351 ILE CD1 C N N 352 ILE OXT O N N 353 ILE H H N N 354 ILE H2 H N N 355 ILE HA H N N 356 ILE HB H N N 357 ILE HG12 H N N 358 ILE HG13 H N N 359 ILE HG21 H N N 360 ILE HG22 H N N 361 ILE HG23 H N N 362 ILE HD11 H N N 363 ILE HD12 H N N 364 ILE HD13 H N N 365 ILE HXT H N N 366 LEU N N N N 367 LEU CA C N S 368 LEU C C N N 369 LEU O O N N 370 LEU CB C N N 371 LEU CG C N N 372 LEU CD1 C N N 373 LEU CD2 C N N 374 LEU OXT O N N 375 LEU H H N N 376 LEU H2 H N N 377 LEU HA H N N 378 LEU HB2 H N N 379 LEU HB3 H N N 380 LEU HG H N N 381 LEU HD11 H N N 382 LEU HD12 H N N 383 LEU HD13 H N N 384 LEU HD21 H N N 385 LEU HD22 H N N 386 LEU HD23 H N N 387 LEU HXT H N N 388 LYS N N N N 389 LYS CA C N S 390 LYS C C N N 391 LYS O O N N 392 LYS CB C N N 393 LYS CG C N N 394 LYS CD C N N 395 LYS CE C N N 396 LYS NZ N N N 397 LYS OXT O N N 398 LYS H H N N 399 LYS H2 H N N 400 LYS HA H N N 401 LYS HB2 H N N 402 LYS HB3 H N N 403 LYS HG2 H N N 404 LYS HG3 H N N 405 LYS HD2 H N N 406 LYS HD3 H N N 407 LYS HE2 H N N 408 LYS HE3 H N N 409 LYS HZ1 H N N 410 LYS HZ2 H N N 411 LYS HZ3 H N N 412 LYS HXT H N N 413 ME6 O2 O N N 414 ME6 C2 C N N 415 ME6 N3 N N N 416 ME6 C20 C N N 417 ME6 C4 C N N 418 ME6 N4 N N N 419 ME6 C5 C N N 420 ME6 C6 C N N 421 ME6 N1 N N N 422 ME6 "C1'" C N R 423 ME6 "O4'" O N N 424 ME6 "C2'" C N N 425 ME6 "C3'" C N S 426 ME6 "O3'" O N N 427 ME6 "C4'" C N R 428 ME6 "C5'" C N N 429 ME6 "O5'" O N N 430 ME6 P P N N 431 ME6 O3P O N N 432 ME6 O2P O N N 433 ME6 H20 H N N 434 ME6 H20A H N N 435 ME6 H20B H N N 436 ME6 HN4 H N N 437 ME6 H5 H N N 438 ME6 H6 H N N 439 ME6 "H1'" H N N 440 ME6 "H2'" H N N 441 ME6 "H2'A" H N N 442 ME6 "H3'" H N N 443 ME6 "HO3'" H N N 444 ME6 "H4'" H N N 445 ME6 "H5'" H N N 446 ME6 "H5'A" H N N 447 ME6 HO3P H N N 448 ME6 HO2P H N N 449 ME6 O1P O N N 450 ME6 H17 H N N 451 MET N N N N 452 MET CA C N S 453 MET C C N N 454 MET O O N N 455 MET CB C N N 456 MET CG C N N 457 MET SD S N N 458 MET CE C N N 459 MET OXT O N N 460 MET H H N N 461 MET H2 H N N 462 MET HA H N N 463 MET HB2 H N N 464 MET HB3 H N N 465 MET HG2 H N N 466 MET HG3 H N N 467 MET HE1 H N N 468 MET HE2 H N N 469 MET HE3 H N N 470 MET HXT H N N 471 PHE N N N N 472 PHE CA C N S 473 PHE C C N N 474 PHE O O N N 475 PHE CB C N N 476 PHE CG C Y N 477 PHE CD1 C Y N 478 PHE CD2 C Y N 479 PHE CE1 C Y N 480 PHE CE2 C Y N 481 PHE CZ C Y N 482 PHE OXT O N N 483 PHE H H N N 484 PHE H2 H N N 485 PHE HA H N N 486 PHE HB2 H N N 487 PHE HB3 H N N 488 PHE HD1 H N N 489 PHE HD2 H N N 490 PHE HE1 H N N 491 PHE HE2 H N N 492 PHE HZ H N N 493 PHE HXT H N N 494 PRO N N N N 495 PRO CA C N S 496 PRO C C N N 497 PRO O O N N 498 PRO CB C N N 499 PRO CG C N N 500 PRO CD C N N 501 PRO OXT O N N 502 PRO H H N N 503 PRO HA H N N 504 PRO HB2 H N N 505 PRO HB3 H N N 506 PRO HG2 H N N 507 PRO HG3 H N N 508 PRO HD2 H N N 509 PRO HD3 H N N 510 PRO HXT H N N 511 SER N N N N 512 SER CA C N S 513 SER C C N N 514 SER O O N N 515 SER CB C N N 516 SER OG O N N 517 SER OXT O N N 518 SER H H N N 519 SER H2 H N N 520 SER HA H N N 521 SER HB2 H N N 522 SER HB3 H N N 523 SER HG H N N 524 SER HXT H N N 525 THR N N N N 526 THR CA C N S 527 THR C C N N 528 THR O O N N 529 THR CB C N R 530 THR OG1 O N N 531 THR CG2 C N N 532 THR OXT O N N 533 THR H H N N 534 THR H2 H N N 535 THR HA H N N 536 THR HB H N N 537 THR HG1 H N N 538 THR HG21 H N N 539 THR HG22 H N N 540 THR HG23 H N N 541 THR HXT H N N 542 TRP N N N N 543 TRP CA C N S 544 TRP C C N N 545 TRP O O N N 546 TRP CB C N N 547 TRP CG C Y N 548 TRP CD1 C Y N 549 TRP CD2 C Y N 550 TRP NE1 N Y N 551 TRP CE2 C Y N 552 TRP CE3 C Y N 553 TRP CZ2 C Y N 554 TRP CZ3 C Y N 555 TRP CH2 C Y N 556 TRP OXT O N N 557 TRP H H N N 558 TRP H2 H N N 559 TRP HA H N N 560 TRP HB2 H N N 561 TRP HB3 H N N 562 TRP HD1 H N N 563 TRP HE1 H N N 564 TRP HE3 H N N 565 TRP HZ2 H N N 566 TRP HZ3 H N N 567 TRP HH2 H N N 568 TRP HXT H N N 569 TYR N N N N 570 TYR CA C N S 571 TYR C C N N 572 TYR O O N N 573 TYR CB C N N 574 TYR CG C Y N 575 TYR CD1 C Y N 576 TYR CD2 C Y N 577 TYR CE1 C Y N 578 TYR CE2 C Y N 579 TYR CZ C Y N 580 TYR OH O N N 581 TYR OXT O N N 582 TYR H H N N 583 TYR H2 H N N 584 TYR HA H N N 585 TYR HB2 H N N 586 TYR HB3 H N N 587 TYR HD1 H N N 588 TYR HD2 H N N 589 TYR HE1 H N N 590 TYR HE2 H N N 591 TYR HH H N N 592 TYR HXT H N N 593 VAL N N N N 594 VAL CA C N S 595 VAL C C N N 596 VAL O O N N 597 VAL CB C N N 598 VAL CG1 C N N 599 VAL CG2 C N N 600 VAL OXT O N N 601 VAL H H N N 602 VAL H2 H N N 603 VAL HA H N N 604 VAL HB H N N 605 VAL HG11 H N N 606 VAL HG12 H N N 607 VAL HG13 H N N 608 VAL HG21 H N N 609 VAL HG22 H N N 610 VAL HG23 H N N 611 VAL HXT H N N 612 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YR S C8 sing N N 1 2YR C8 C9 sing N N 2 2YR N4 C9 sing N N 3 2YR N4 C4 sing N N 4 2YR C4 N3 doub N N 5 2YR C4 C5 sing N N 6 2YR N3 C2 sing N N 7 2YR C5 C6 doub N N 8 2YR C2 O2 doub N N 9 2YR C2 N1 sing N N 10 2YR C6 N1 sing N N 11 2YR N1 "C1'" sing N N 12 2YR "C2'" "C3'" sing N N 13 2YR "C2'" "C1'" sing N N 14 2YR "C3'" "O3'" sing N N 15 2YR "C3'" "C4'" sing N N 16 2YR "C1'" "O4'" sing N N 17 2YR "O4'" "C4'" sing N N 18 2YR "C4'" "C5'" sing N N 19 2YR "C5'" "O5'" sing N N 20 2YR "O5'" P sing N N 21 2YR OP2 P sing N N 22 2YR P OP1 doub N N 23 2YR OP2 H2 sing N N 24 2YR "C5'" H3 sing N N 25 2YR "C5'" H4 sing N N 26 2YR "C4'" H5 sing N N 27 2YR "C3'" H6 sing N N 28 2YR "O3'" H7 sing N N 29 2YR "C2'" H8 sing N N 30 2YR "C2'" H9 sing N N 31 2YR "C1'" H10 sing N N 32 2YR N4 H11 sing N N 33 2YR C5 H12 sing N N 34 2YR C6 H13 sing N N 35 2YR S H14 sing N N 36 2YR C8 H15 sing N N 37 2YR C8 H16 sing N N 38 2YR C9 H17 sing N N 39 2YR C9 H18 sing N N 40 2YR P OP3 sing N N 41 2YR OP3 H20 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DC OP3 P sing N N 163 DC OP3 HOP3 sing N N 164 DC P OP1 doub N N 165 DC P OP2 sing N N 166 DC P "O5'" sing N N 167 DC OP2 HOP2 sing N N 168 DC "O5'" "C5'" sing N N 169 DC "C5'" "C4'" sing N N 170 DC "C5'" "H5'" sing N N 171 DC "C5'" "H5''" sing N N 172 DC "C4'" "O4'" sing N N 173 DC "C4'" "C3'" sing N N 174 DC "C4'" "H4'" sing N N 175 DC "O4'" "C1'" sing N N 176 DC "C3'" "O3'" sing N N 177 DC "C3'" "C2'" sing N N 178 DC "C3'" "H3'" sing N N 179 DC "O3'" "HO3'" sing N N 180 DC "C2'" "C1'" sing N N 181 DC "C2'" "H2'" sing N N 182 DC "C2'" "H2''" sing N N 183 DC "C1'" N1 sing N N 184 DC "C1'" "H1'" sing N N 185 DC N1 C2 sing N N 186 DC N1 C6 sing N N 187 DC C2 O2 doub N N 188 DC C2 N3 sing N N 189 DC N3 C4 doub N N 190 DC C4 N4 sing N N 191 DC C4 C5 sing N N 192 DC N4 H41 sing N N 193 DC N4 H42 sing N N 194 DC C5 C6 doub N N 195 DC C5 H5 sing N N 196 DC C6 H6 sing N N 197 DG OP3 P sing N N 198 DG OP3 HOP3 sing N N 199 DG P OP1 doub N N 200 DG P OP2 sing N N 201 DG P "O5'" sing N N 202 DG OP2 HOP2 sing N N 203 DG "O5'" "C5'" sing N N 204 DG "C5'" "C4'" sing N N 205 DG "C5'" "H5'" sing N N 206 DG "C5'" "H5''" sing N N 207 DG "C4'" "O4'" sing N N 208 DG "C4'" "C3'" sing N N 209 DG "C4'" "H4'" sing N N 210 DG "O4'" "C1'" sing N N 211 DG "C3'" "O3'" sing N N 212 DG "C3'" "C2'" sing N N 213 DG "C3'" "H3'" sing N N 214 DG "O3'" "HO3'" sing N N 215 DG "C2'" "C1'" sing N N 216 DG "C2'" "H2'" sing N N 217 DG "C2'" "H2''" sing N N 218 DG "C1'" N9 sing N N 219 DG "C1'" "H1'" sing N N 220 DG N9 C8 sing Y N 221 DG N9 C4 sing Y N 222 DG C8 N7 doub Y N 223 DG C8 H8 sing N N 224 DG N7 C5 sing Y N 225 DG C5 C6 sing N N 226 DG C5 C4 doub Y N 227 DG C6 O6 doub N N 228 DG C6 N1 sing N N 229 DG N1 C2 sing N N 230 DG N1 H1 sing N N 231 DG C2 N2 sing N N 232 DG C2 N3 doub N N 233 DG N2 H21 sing N N 234 DG N2 H22 sing N N 235 DG N3 C4 sing N N 236 DT OP3 P sing N N 237 DT OP3 HOP3 sing N N 238 DT P OP1 doub N N 239 DT P OP2 sing N N 240 DT P "O5'" sing N N 241 DT OP2 HOP2 sing N N 242 DT "O5'" "C5'" sing N N 243 DT "C5'" "C4'" sing N N 244 DT "C5'" "H5'" sing N N 245 DT "C5'" "H5''" sing N N 246 DT "C4'" "O4'" sing N N 247 DT "C4'" "C3'" sing N N 248 DT "C4'" "H4'" sing N N 249 DT "O4'" "C1'" sing N N 250 DT "C3'" "O3'" sing N N 251 DT "C3'" "C2'" sing N N 252 DT "C3'" "H3'" sing N N 253 DT "O3'" "HO3'" sing N N 254 DT "C2'" "C1'" sing N N 255 DT "C2'" "H2'" sing N N 256 DT "C2'" "H2''" sing N N 257 DT "C1'" N1 sing N N 258 DT "C1'" "H1'" sing N N 259 DT N1 C2 sing N N 260 DT N1 C6 sing N N 261 DT C2 O2 doub N N 262 DT C2 N3 sing N N 263 DT N3 C4 sing N N 264 DT N3 H3 sing N N 265 DT C4 O4 doub N N 266 DT C4 C5 sing N N 267 DT C5 C7 sing N N 268 DT C5 C6 doub N N 269 DT C7 H71 sing N N 270 DT C7 H72 sing N N 271 DT C7 H73 sing N N 272 DT C6 H6 sing N N 273 GLN N CA sing N N 274 GLN N H sing N N 275 GLN N H2 sing N N 276 GLN CA C sing N N 277 GLN CA CB sing N N 278 GLN CA HA sing N N 279 GLN C O doub N N 280 GLN C OXT sing N N 281 GLN CB CG sing N N 282 GLN CB HB2 sing N N 283 GLN CB HB3 sing N N 284 GLN CG CD sing N N 285 GLN CG HG2 sing N N 286 GLN CG HG3 sing N N 287 GLN CD OE1 doub N N 288 GLN CD NE2 sing N N 289 GLN NE2 HE21 sing N N 290 GLN NE2 HE22 sing N N 291 GLN OXT HXT sing N N 292 GLU N CA sing N N 293 GLU N H sing N N 294 GLU N H2 sing N N 295 GLU CA C sing N N 296 GLU CA CB sing N N 297 GLU CA HA sing N N 298 GLU C O doub N N 299 GLU C OXT sing N N 300 GLU CB CG sing N N 301 GLU CB HB2 sing N N 302 GLU CB HB3 sing N N 303 GLU CG CD sing N N 304 GLU CG HG2 sing N N 305 GLU CG HG3 sing N N 306 GLU CD OE1 doub N N 307 GLU CD OE2 sing N N 308 GLU OE2 HE2 sing N N 309 GLU OXT HXT sing N N 310 GLY N CA sing N N 311 GLY N H sing N N 312 GLY N H2 sing N N 313 GLY CA C sing N N 314 GLY CA HA2 sing N N 315 GLY CA HA3 sing N N 316 GLY C O doub N N 317 GLY C OXT sing N N 318 GLY OXT HXT sing N N 319 HIS N CA sing N N 320 HIS N H sing N N 321 HIS N H2 sing N N 322 HIS CA C sing N N 323 HIS CA CB sing N N 324 HIS CA HA sing N N 325 HIS C O doub N N 326 HIS C OXT sing N N 327 HIS CB CG sing N N 328 HIS CB HB2 sing N N 329 HIS CB HB3 sing N N 330 HIS CG ND1 sing Y N 331 HIS CG CD2 doub Y N 332 HIS ND1 CE1 doub Y N 333 HIS ND1 HD1 sing N N 334 HIS CD2 NE2 sing Y N 335 HIS CD2 HD2 sing N N 336 HIS CE1 NE2 sing Y N 337 HIS CE1 HE1 sing N N 338 HIS NE2 HE2 sing N N 339 HIS OXT HXT sing N N 340 HOH O H1 sing N N 341 HOH O H2 sing N N 342 ILE N CA sing N N 343 ILE N H sing N N 344 ILE N H2 sing N N 345 ILE CA C sing N N 346 ILE CA CB sing N N 347 ILE CA HA sing N N 348 ILE C O doub N N 349 ILE C OXT sing N N 350 ILE CB CG1 sing N N 351 ILE CB CG2 sing N N 352 ILE CB HB sing N N 353 ILE CG1 CD1 sing N N 354 ILE CG1 HG12 sing N N 355 ILE CG1 HG13 sing N N 356 ILE CG2 HG21 sing N N 357 ILE CG2 HG22 sing N N 358 ILE CG2 HG23 sing N N 359 ILE CD1 HD11 sing N N 360 ILE CD1 HD12 sing N N 361 ILE CD1 HD13 sing N N 362 ILE OXT HXT sing N N 363 LEU N CA sing N N 364 LEU N H sing N N 365 LEU N H2 sing N N 366 LEU CA C sing N N 367 LEU CA CB sing N N 368 LEU CA HA sing N N 369 LEU C O doub N N 370 LEU C OXT sing N N 371 LEU CB CG sing N N 372 LEU CB HB2 sing N N 373 LEU CB HB3 sing N N 374 LEU CG CD1 sing N N 375 LEU CG CD2 sing N N 376 LEU CG HG sing N N 377 LEU CD1 HD11 sing N N 378 LEU CD1 HD12 sing N N 379 LEU CD1 HD13 sing N N 380 LEU CD2 HD21 sing N N 381 LEU CD2 HD22 sing N N 382 LEU CD2 HD23 sing N N 383 LEU OXT HXT sing N N 384 LYS N CA sing N N 385 LYS N H sing N N 386 LYS N H2 sing N N 387 LYS CA C sing N N 388 LYS CA CB sing N N 389 LYS CA HA sing N N 390 LYS C O doub N N 391 LYS C OXT sing N N 392 LYS CB CG sing N N 393 LYS CB HB2 sing N N 394 LYS CB HB3 sing N N 395 LYS CG CD sing N N 396 LYS CG HG2 sing N N 397 LYS CG HG3 sing N N 398 LYS CD CE sing N N 399 LYS CD HD2 sing N N 400 LYS CD HD3 sing N N 401 LYS CE NZ sing N N 402 LYS CE HE2 sing N N 403 LYS CE HE3 sing N N 404 LYS NZ HZ1 sing N N 405 LYS NZ HZ2 sing N N 406 LYS NZ HZ3 sing N N 407 LYS OXT HXT sing N N 408 ME6 O2 C2 doub N N 409 ME6 C2 N1 sing N N 410 ME6 C2 N3 sing N N 411 ME6 N3 C4 doub N N 412 ME6 C20 N3 sing N N 413 ME6 C20 H20 sing N N 414 ME6 C20 H20A sing N N 415 ME6 C20 H20B sing N N 416 ME6 C4 N4 sing N N 417 ME6 C4 C5 sing N N 418 ME6 N4 HN4 sing N N 419 ME6 C5 H5 sing N N 420 ME6 C6 C5 doub N N 421 ME6 C6 H6 sing N N 422 ME6 N1 C6 sing N N 423 ME6 "C1'" N1 sing N N 424 ME6 "C1'" "H1'" sing N N 425 ME6 "O4'" "C1'" sing N N 426 ME6 "C2'" "C1'" sing N N 427 ME6 "C2'" "H2'" sing N N 428 ME6 "C2'" "H2'A" sing N N 429 ME6 "C3'" "C2'" sing N N 430 ME6 "C3'" "O3'" sing N N 431 ME6 "C3'" "H3'" sing N N 432 ME6 "O3'" "HO3'" sing N N 433 ME6 "C4'" "O4'" sing N N 434 ME6 "C4'" "C3'" sing N N 435 ME6 "C4'" "H4'" sing N N 436 ME6 "C5'" "C4'" sing N N 437 ME6 "C5'" "H5'" sing N N 438 ME6 "C5'" "H5'A" sing N N 439 ME6 "O5'" "C5'" sing N N 440 ME6 P "O5'" sing N N 441 ME6 P O3P sing N N 442 ME6 P O1P doub N N 443 ME6 O3P HO3P sing N N 444 ME6 O2P P sing N N 445 ME6 O2P HO2P sing N N 446 ME6 N4 H17 sing N N 447 MET N CA sing N N 448 MET N H sing N N 449 MET N H2 sing N N 450 MET CA C sing N N 451 MET CA CB sing N N 452 MET CA HA sing N N 453 MET C O doub N N 454 MET C OXT sing N N 455 MET CB CG sing N N 456 MET CB HB2 sing N N 457 MET CB HB3 sing N N 458 MET CG SD sing N N 459 MET CG HG2 sing N N 460 MET CG HG3 sing N N 461 MET SD CE sing N N 462 MET CE HE1 sing N N 463 MET CE HE2 sing N N 464 MET CE HE3 sing N N 465 MET OXT HXT sing N N 466 PHE N CA sing N N 467 PHE N H sing N N 468 PHE N H2 sing N N 469 PHE CA C sing N N 470 PHE CA CB sing N N 471 PHE CA HA sing N N 472 PHE C O doub N N 473 PHE C OXT sing N N 474 PHE CB CG sing N N 475 PHE CB HB2 sing N N 476 PHE CB HB3 sing N N 477 PHE CG CD1 doub Y N 478 PHE CG CD2 sing Y N 479 PHE CD1 CE1 sing Y N 480 PHE CD1 HD1 sing N N 481 PHE CD2 CE2 doub Y N 482 PHE CD2 HD2 sing N N 483 PHE CE1 CZ doub Y N 484 PHE CE1 HE1 sing N N 485 PHE CE2 CZ sing Y N 486 PHE CE2 HE2 sing N N 487 PHE CZ HZ sing N N 488 PHE OXT HXT sing N N 489 PRO N CA sing N N 490 PRO N CD sing N N 491 PRO N H sing N N 492 PRO CA C sing N N 493 PRO CA CB sing N N 494 PRO CA HA sing N N 495 PRO C O doub N N 496 PRO C OXT sing N N 497 PRO CB CG sing N N 498 PRO CB HB2 sing N N 499 PRO CB HB3 sing N N 500 PRO CG CD sing N N 501 PRO CG HG2 sing N N 502 PRO CG HG3 sing N N 503 PRO CD HD2 sing N N 504 PRO CD HD3 sing N N 505 PRO OXT HXT sing N N 506 SER N CA sing N N 507 SER N H sing N N 508 SER N H2 sing N N 509 SER CA C sing N N 510 SER CA CB sing N N 511 SER CA HA sing N N 512 SER C O doub N N 513 SER C OXT sing N N 514 SER CB OG sing N N 515 SER CB HB2 sing N N 516 SER CB HB3 sing N N 517 SER OG HG sing N N 518 SER OXT HXT sing N N 519 THR N CA sing N N 520 THR N H sing N N 521 THR N H2 sing N N 522 THR CA C sing N N 523 THR CA CB sing N N 524 THR CA HA sing N N 525 THR C O doub N N 526 THR C OXT sing N N 527 THR CB OG1 sing N N 528 THR CB CG2 sing N N 529 THR CB HB sing N N 530 THR OG1 HG1 sing N N 531 THR CG2 HG21 sing N N 532 THR CG2 HG22 sing N N 533 THR CG2 HG23 sing N N 534 THR OXT HXT sing N N 535 TRP N CA sing N N 536 TRP N H sing N N 537 TRP N H2 sing N N 538 TRP CA C sing N N 539 TRP CA CB sing N N 540 TRP CA HA sing N N 541 TRP C O doub N N 542 TRP C OXT sing N N 543 TRP CB CG sing N N 544 TRP CB HB2 sing N N 545 TRP CB HB3 sing N N 546 TRP CG CD1 doub Y N 547 TRP CG CD2 sing Y N 548 TRP CD1 NE1 sing Y N 549 TRP CD1 HD1 sing N N 550 TRP CD2 CE2 doub Y N 551 TRP CD2 CE3 sing Y N 552 TRP NE1 CE2 sing Y N 553 TRP NE1 HE1 sing N N 554 TRP CE2 CZ2 sing Y N 555 TRP CE3 CZ3 doub Y N 556 TRP CE3 HE3 sing N N 557 TRP CZ2 CH2 doub Y N 558 TRP CZ2 HZ2 sing N N 559 TRP CZ3 CH2 sing Y N 560 TRP CZ3 HZ3 sing N N 561 TRP CH2 HH2 sing N N 562 TRP OXT HXT sing N N 563 TYR N CA sing N N 564 TYR N H sing N N 565 TYR N H2 sing N N 566 TYR CA C sing N N 567 TYR CA CB sing N N 568 TYR CA HA sing N N 569 TYR C O doub N N 570 TYR C OXT sing N N 571 TYR CB CG sing N N 572 TYR CB HB2 sing N N 573 TYR CB HB3 sing N N 574 TYR CG CD1 doub Y N 575 TYR CG CD2 sing Y N 576 TYR CD1 CE1 sing Y N 577 TYR CD1 HD1 sing N N 578 TYR CD2 CE2 doub Y N 579 TYR CD2 HD2 sing N N 580 TYR CE1 CZ doub Y N 581 TYR CE1 HE1 sing N N 582 TYR CE2 CZ sing Y N 583 TYR CE2 HE2 sing N N 584 TYR CZ OH sing N N 585 TYR OH HH sing N N 586 TYR OXT HXT sing N N 587 VAL N CA sing N N 588 VAL N H sing N N 589 VAL N H2 sing N N 590 VAL CA C sing N N 591 VAL CA CB sing N N 592 VAL CA HA sing N N 593 VAL C O doub N N 594 VAL C OXT sing N N 595 VAL CB CG1 sing N N 596 VAL CB CG2 sing N N 597 VAL CB HB sing N N 598 VAL CG1 HG11 sing N N 599 VAL CG1 HG12 sing N N 600 VAL CG1 HG13 sing N N 601 VAL CG2 HG21 sing N N 602 VAL CG2 HG22 sing N N 603 VAL CG2 HG23 sing N N 604 VAL OXT HXT sing N N 605 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3H8X 'double helix' 3H8X 'b-form double helix' 3H8X 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 C DA 13 1_555 -0.077 -0.191 -0.591 0.840 -7.999 4.272 1 B_DT260:DA284_C B 260 ? C 284 ? 20 1 1 B DG 3 1_555 C DC 12 1_555 0.559 -0.089 0.524 10.609 -8.482 0.050 2 B_DG261:DC283_C B 261 ? C 283 ? 19 1 1 B DT 4 1_555 C DA 11 1_555 0.189 0.229 -0.075 6.695 -8.053 3.612 3 B_DT262:DA282_C B 262 ? C 282 ? 20 1 1 B DT 6 1_555 C DA 8 1_555 0.160 -1.379 0.168 -33.081 -3.462 167.132 4 B_DT264:DA279_C B 264 ? C 279 ? 21 2 1 B DA 8 1_555 C DT 7 1_555 -0.064 -0.092 -0.167 -16.066 -6.464 7.719 5 B_DA266:DT278_C B 266 ? C 278 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.005 -0.110 -0.038 -2.437 -6.701 -1.099 6 B_DT267:DA277_C B 267 ? C 277 ? 20 1 1 B DT 10 1_555 C DA 5 1_555 -0.132 -0.048 -0.340 5.978 -11.636 -1.954 7 B_DT268:DA276_C B 268 ? C 276 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.687 0.013 -0.094 -5.602 -12.670 2.678 8 B_DG269:DC275_C B 269 ? C 275 ? 19 1 1 B DC 12 1_555 C DG 3 1_555 0.354 0.016 0.253 -7.814 -7.846 0.918 9 B_DC270:DG274_C B 270 ? C 274 ? 19 1 1 B DG 13 1_555 C DC 2 1_555 -0.216 -0.070 0.111 5.312 -11.421 2.675 10 B_DG271:DC273_C B 271 ? C 273 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 C DA 13 1_555 B DG 3 1_555 C DC 12 1_555 1.064 -0.079 3.267 -4.417 10.711 28.798 -2.158 -2.820 2.866 20.518 8.462 30.996 1 BB_DT260DG261:DC283DA284_CC B 260 ? C 284 ? B 261 ? C 283 ? 1 B DG 3 1_555 C DC 12 1_555 B DT 4 1_555 C DA 11 1_555 -0.528 -0.242 3.338 3.532 0.178 27.704 -0.544 1.944 3.245 0.369 -7.339 27.925 2 BB_DG261DT262:DA282DC283_CC B 261 ? C 283 ? B 262 ? C 282 ? 1 B DA 8 1_555 C DT 7 1_555 B DT 9 1_555 C DA 6 1_555 -1.102 -0.892 3.045 1.920 7.007 26.506 -3.405 2.738 2.642 14.930 -4.091 27.467 3 BB_DA266DT267:DA277DT278_CC B 266 ? C 278 ? B 267 ? C 277 ? 1 B DT 9 1_555 C DA 6 1_555 B DT 10 1_555 C DA 5 1_555 -0.218 -0.166 3.137 4.194 0.034 32.062 -0.305 1.101 3.085 0.062 -7.553 32.328 4 BB_DT267DT268:DA276DA277_CC B 267 ? C 277 ? B 268 ? C 276 ? 1 B DT 10 1_555 C DA 5 1_555 B DG 11 1_555 C DC 4 1_555 0.442 0.221 3.594 -0.465 8.522 36.669 -0.885 -0.752 3.550 13.324 0.727 37.616 5 BB_DT268DG269:DC275DA276_CC B 268 ? C 276 ? B 269 ? C 275 ? 1 B DG 11 1_555 C DC 4 1_555 B DC 12 1_555 C DG 3 1_555 0.132 0.075 3.362 -2.067 0.218 38.478 0.086 -0.462 3.351 0.330 3.134 38.532 6 BB_DG269DC270:DG274DC275_CC B 269 ? C 275 ? B 270 ? C 274 ? 1 B DC 12 1_555 C DG 3 1_555 B DG 13 1_555 C DC 2 1_555 0.151 0.756 3.087 1.864 9.508 30.751 -0.300 0.054 3.177 17.395 -3.410 32.206 7 BB_DC270DG271:DC273DG274_CC B 270 ? C 274 ? B 271 ? C 273 ? # _atom_sites.entry_id 3H8X _atom_sites.fract_transf_matrix[1][1] 0.012641 _atom_sites.fract_transf_matrix[1][2] 0.007298 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014596 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004128 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_