HEADER OXIDOREDUCTASE 04-MAY-09 3HBP TITLE THE CRYSTAL STRUCTURE OF C185S MUTANT OF RECOMBINANT SULFITE OXIDASE TITLE 2 WITH BOUND SUBSTRATE, SULFITE, AT THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFITE OXIDASE MUTANT C185S; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RCSO C185S RESIDUES 94 TO 466; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_TAXID: 9031; SOURCE 4 GENE: SULFITE OXIDASE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TP1000; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A_RCSO_C185S KEYWDS METAL BINDING, MOLYBDENUM, OXOTRANSFERASE, MOLYBDOPTERIN, SULFITE KEYWDS 2 OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.QIU REVDAT 5 06-SEP-23 3HBP 1 REMARK REVDAT 4 01-NOV-17 3HBP 1 REMARK REVDAT 3 13-JUL-11 3HBP 1 VERSN REVDAT 2 19-MAY-10 3HBP 1 JRNL REVDAT 1 14-APR-10 3HBP 0 JRNL AUTH J.A.QIU,H.L.WILSON,M.J.PUSHIE,C.KISKER,G.N.GEORGE, JRNL AUTH 2 K.V.RAJAGOPALAN JRNL TITL THE STRUCTURES OF THE C185S AND C185A MUTANTS OF SULFITE JRNL TITL 2 OXIDASE REVEAL REARRANGEMENT OF THE ACTIVE SITE. JRNL REF BIOCHEMISTRY V. 49 3989 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20356030 JRNL DOI 10.1021/BI1001954 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1402 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.439 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2994 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4102 ; 1.401 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;32.629 ;22.290 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;14.111 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;22.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2369 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1867 ; 0.544 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3014 ; 1.067 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 1.851 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1088 ; 3.044 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3040 -3.7430 46.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.1857 REMARK 3 T33: 0.0670 T12: 0.0451 REMARK 3 T13: -0.0185 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.0190 L22: 0.8333 REMARK 3 L33: 4.0895 L12: 0.3993 REMARK 3 L13: 0.7429 L23: -0.3476 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: -0.1227 S13: 0.0467 REMARK 3 S21: 0.0500 S22: -0.0108 S23: 0.0807 REMARK 3 S31: -0.1573 S32: -0.4438 S33: 0.0659 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0870 -18.4280 35.5610 REMARK 3 T TENSOR REMARK 3 T11: 1.3070 T22: 0.7979 REMARK 3 T33: 1.1363 T12: 0.2123 REMARK 3 T13: -0.1113 T23: -0.6262 REMARK 3 L TENSOR REMARK 3 L11: 2.2435 L22: 7.6983 REMARK 3 L33: 0.7406 L12: 2.6155 REMARK 3 L13: -0.8065 L23: 0.5058 REMARK 3 S TENSOR REMARK 3 S11: -0.5167 S12: 0.8647 S13: -1.3692 REMARK 3 S21: -0.6513 S22: -0.0644 S23: -1.2588 REMARK 3 S31: 0.1393 S32: -0.6536 S33: 0.5810 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 431 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6510 11.4390 28.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.4153 T22: 0.1765 REMARK 3 T33: 0.1167 T12: 0.0116 REMARK 3 T13: -0.0621 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 3.2262 L22: 1.9903 REMARK 3 L33: 4.8812 L12: 0.5717 REMARK 3 L13: -0.1862 L23: -0.6849 REMARK 3 S TENSOR REMARK 3 S11: -0.1694 S12: 0.5544 S13: 0.5386 REMARK 3 S21: -0.2762 S22: 0.1265 S23: 0.1354 REMARK 3 S31: -0.8056 S32: -0.2617 S33: 0.0429 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 466 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0930 1.7120 24.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.3407 T22: 0.2607 REMARK 3 T33: 0.0161 T12: -0.0363 REMARK 3 T13: -0.0119 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.9235 L22: 1.5893 REMARK 3 L33: 2.9253 L12: 1.3266 REMARK 3 L13: 0.6779 L23: 1.4775 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: 0.6814 S13: 0.1305 REMARK 3 S21: -0.2351 S22: 0.0208 S23: 0.0464 REMARK 3 S31: -0.2572 S32: -0.1841 S33: 0.1168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: RECOMBINANT CHICKEN LIVER SULFITE OXIDASE 2A99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG 4000 (W/V), 10 % MPD (V/V), 100 REMARK 280 MM SODIUM ACETATE PH 5.0, AND 0.5 MM SODIUM SULFITE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 43.14200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.16950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.08475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.14200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.25425 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.14200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.16950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.14200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 114.25425 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.08475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS COMPOSED OF TWO MOLECULES IN THE REMARK 300 ASYMMETRIC UNIT IN A HOMODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 PRO A 5 REMARK 465 GLU A 6 REMARK 465 TYR A 7 REMARK 465 THR A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 HIS A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ARG A 21 REMARK 465 VAL A 22 REMARK 465 TRP A 23 REMARK 465 VAL A 24 REMARK 465 THR A 25 REMARK 465 HIS A 26 REMARK 465 GLY A 27 REMARK 465 THR A 28 REMARK 465 ASP A 29 REMARK 465 VAL A 30 REMARK 465 PHE A 31 REMARK 465 ASP A 32 REMARK 465 VAL A 33 REMARK 465 THR A 34 REMARK 465 ASP A 35 REMARK 465 PHE A 36 REMARK 465 VAL A 37 REMARK 465 GLU A 38 REMARK 465 LEU A 39 REMARK 465 HIS A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 GLY A 43 REMARK 465 PRO A 44 REMARK 465 ASP A 45 REMARK 465 LYS A 46 REMARK 465 ILE A 47 REMARK 465 LEU A 48 REMARK 465 LEU A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 53 REMARK 465 ALA A 54 REMARK 465 LEU A 55 REMARK 465 GLU A 56 REMARK 465 PRO A 57 REMARK 465 PHE A 58 REMARK 465 TRP A 59 REMARK 465 ALA A 60 REMARK 465 LEU A 61 REMARK 465 TYR A 62 REMARK 465 ALA A 63 REMARK 465 VAL A 64 REMARK 465 HIS A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 465 PRO A 68 REMARK 465 HIS A 69 REMARK 465 VAL A 70 REMARK 465 LEU A 71 REMARK 465 GLU A 72 REMARK 465 LEU A 73 REMARK 465 LEU A 74 REMARK 465 GLN A 75 REMARK 465 GLN A 76 REMARK 465 TYR A 77 REMARK 465 LYS A 78 REMARK 465 VAL A 79 REMARK 465 GLY A 80 REMARK 465 GLU A 81 REMARK 465 LEU A 82 REMARK 465 SER A 83 REMARK 465 PRO A 84 REMARK 465 ASP A 85 REMARK 465 GLU A 86 REMARK 465 ALA A 87 REMARK 465 PRO A 88 REMARK 465 ALA A 89 REMARK 465 ALA A 90 REMARK 465 PRO A 91 REMARK 465 ASP A 92 REMARK 465 ALA A 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 185 OM2 MOM A 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 262 CA - CB - CG ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 206 10.61 -67.03 REMARK 500 PRO A 327 -4.69 -56.10 REMARK 500 GLN A 343 -89.19 -114.91 REMARK 500 LYS A 401 76.43 37.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MOM A 502 MO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MTE A 501 S1' REMARK 620 2 MOM A 502 OM3 95.6 REMARK 620 3 MOM A 502 OM1 125.5 108.8 REMARK 620 4 MOM A 502 OM2 132.8 77.2 100.4 REMARK 620 5 MTE A 501 S2' 81.0 141.4 104.1 77.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO3 A 1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOM A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SOX RELATED DB: PDB REMARK 900 RELATED ID: 2A99 RELATED DB: PDB REMARK 900 RELATED ID: 2A9A RELATED DB: PDB DBREF 3HBP A 1 466 PDB 3HBP 3HBP 1 466 SEQRES 1 A 466 ALA PRO SER TYR PRO GLU TYR THR ARG GLU GLU VAL GLY SEQRES 2 A 466 ARG HIS ARG SER PRO GLU GLU ARG VAL TRP VAL THR HIS SEQRES 3 A 466 GLY THR ASP VAL PHE ASP VAL THR ASP PHE VAL GLU LEU SEQRES 4 A 466 HIS PRO GLY GLY PRO ASP LYS ILE LEU LEU ALA ALA GLY SEQRES 5 A 466 GLY ALA LEU GLU PRO PHE TRP ALA LEU TYR ALA VAL HIS SEQRES 6 A 466 GLY GLU PRO HIS VAL LEU GLU LEU LEU GLN GLN TYR LYS SEQRES 7 A 466 VAL GLY GLU LEU SER PRO ASP GLU ALA PRO ALA ALA PRO SEQRES 8 A 466 ASP ALA GLN ASP PRO PHE ALA GLY ASP PRO PRO ARG HIS SEQRES 9 A 466 PRO GLY LEU ARG VAL ASN SER GLN LYS PRO PHE ASN ALA SEQRES 10 A 466 GLU PRO PRO ALA GLU LEU LEU ALA GLU ARG PHE LEU THR SEQRES 11 A 466 PRO ASN GLU LEU PHE PHE THR ARG ASN HIS LEU PRO VAL SEQRES 12 A 466 PRO ALA VAL GLU PRO SER SER TYR ARG LEU ARG VAL ASP SEQRES 13 A 466 GLY PRO GLY GLY GLY THR LEU SER LEU SER LEU ALA GLU SEQRES 14 A 466 LEU ARG SER ARG PHE PRO LYS HIS GLU VAL THR ALA THR SEQRES 15 A 466 LEU GLN SER ALA GLY ASN ARG ARG SER GLU MET SER ARG SEQRES 16 A 466 VAL ARG PRO VAL LYS GLY LEU PRO TRP ASP ILE GLY ALA SEQRES 17 A 466 ILE SER THR ALA ARG TRP GLY GLY ALA ARG LEU ARG ASP SEQRES 18 A 466 VAL LEU LEU HIS ALA GLY PHE PRO GLU GLU LEU GLN GLY SEQRES 19 A 466 GLU TRP HIS VAL CYS PHE GLU GLY LEU ASP ALA ASP PRO SEQRES 20 A 466 GLY GLY ALA PRO TYR GLY ALA SER ILE PRO TYR GLY ARG SEQRES 21 A 466 ALA LEU SER PRO ALA ALA ASP VAL LEU LEU ALA TYR GLU SEQRES 22 A 466 MET ASN GLY THR GLU LEU PRO ARG ASP HIS GLY PHE PRO SEQRES 23 A 466 VAL ARG VAL VAL VAL PRO GLY VAL VAL GLY ALA ARG SER SEQRES 24 A 466 VAL LYS TRP LEU ARG ARG VAL ALA VAL SER PRO ASP GLU SEQRES 25 A 466 SER PRO SER HIS TRP GLN GLN ASN ASP TYR LYS GLY PHE SEQRES 26 A 466 SER PRO CYS VAL ASP TRP ASP THR VAL ASP TYR ARG THR SEQRES 27 A 466 ALA PRO ALA ILE GLN GLU LEU PRO VAL GLN SER ALA VAL SEQRES 28 A 466 THR GLN PRO ARG PRO GLY ALA ALA VAL PRO PRO GLY GLU SEQRES 29 A 466 LEU THR VAL LYS GLY TYR ALA TRP SER GLY GLY GLY ARG SEQRES 30 A 466 GLU VAL VAL ARG VAL ASP VAL SER LEU ASP GLY GLY ARG SEQRES 31 A 466 THR TRP LYS VAL ALA ARG LEU MET GLY ASP LYS ALA PRO SEQRES 32 A 466 PRO GLY ARG ALA TRP ALA TRP ALA LEU TRP GLU LEU THR SEQRES 33 A 466 VAL PRO VAL GLU ALA GLY THR GLU LEU GLU ILE VAL CYS SEQRES 34 A 466 LYS ALA VAL ASP SER SER TYR ASN VAL GLN PRO ASP SER SEQRES 35 A 466 VAL ALA PRO ILE TRP ASN LEU ARG GLY VAL LEU SER THR SEQRES 36 A 466 ALA TRP HIS ARG VAL ARG VAL SER VAL GLN ASP HET MTE A 501 24 HET MOM A 502 4 HET SO3 A1257 4 HETNAM MTE PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, HETNAM 2 MTE 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA- HETNAM 3 MTE ANTHRACEN-7-YLMETHYL)ESTER HETNAM MOM HYDROXY(DIOXO)MOLYBDENUM HETNAM SO3 SULFITE ION FORMUL 2 MTE C10 H14 N5 O6 P S2 FORMUL 3 MOM H MO O3 FORMUL 4 SO3 O3 S 2- FORMUL 5 HOH *85(H2 O) HELIX 1 1 PRO A 120 ALA A 125 1 6 HELIX 2 2 LEU A 167 PHE A 174 1 8 HELIX 3 3 ARG A 189 ARG A 195 1 7 HELIX 4 4 LEU A 219 GLY A 227 1 9 HELIX 5 5 TYR A 258 SER A 263 1 6 HELIX 6 6 PRO A 280 GLY A 284 5 5 HELIX 7 7 VAL A 295 SER A 299 5 5 HELIX 8 8 SER A 315 ASN A 320 1 6 HELIX 9 9 VAL A 443 TRP A 447 5 5 SHEET 1 A 3 ARG A 108 SER A 111 0 SHEET 2 A 3 ASN A 116 GLU A 118 -1 O GLU A 118 N ARG A 108 SHEET 3 A 3 THR A 137 ARG A 138 -1 O THR A 137 N ALA A 117 SHEET 1 B 5 THR A 162 SER A 166 0 SHEET 2 B 5 ARG A 152 ASP A 156 -1 N VAL A 155 O LEU A 163 SHEET 3 B 5 LEU A 303 SER A 309 1 O VAL A 306 N ARG A 154 SHEET 4 B 5 HIS A 237 ALA A 245 -1 N CYS A 239 O ALA A 307 SHEET 5 B 5 PRO A 251 PRO A 257 -1 O ALA A 254 N PHE A 240 SHEET 1 C 4 LYS A 176 GLN A 184 0 SHEET 2 C 4 ILE A 209 ARG A 218 -1 O TRP A 214 N VAL A 179 SHEET 3 C 4 LEU A 269 MET A 274 -1 O LEU A 270 N ALA A 217 SHEET 4 C 4 THR A 277 GLU A 278 -1 O THR A 277 N MET A 274 SHEET 1 D 4 LYS A 176 GLN A 184 0 SHEET 2 D 4 ILE A 209 ARG A 218 -1 O TRP A 214 N VAL A 179 SHEET 3 D 4 LEU A 269 MET A 274 -1 O LEU A 270 N ALA A 217 SHEET 4 D 4 ARG A 288 VAL A 290 -1 O VAL A 290 N LEU A 269 SHEET 1 E 4 GLN A 348 GLN A 353 0 SHEET 2 E 4 GLY A 363 TRP A 372 -1 O TRP A 372 N GLN A 348 SHEET 3 E 4 ALA A 411 VAL A 419 -1 O ALA A 411 N ALA A 371 SHEET 4 E 4 ARG A 396 MET A 398 -1 N MET A 398 O LEU A 412 SHEET 1 F 5 ALA A 359 VAL A 360 0 SHEET 2 F 5 HIS A 458 VAL A 464 1 O SER A 463 N VAL A 360 SHEET 3 F 5 GLU A 424 ASP A 433 -1 N ILE A 427 O VAL A 460 SHEET 4 F 5 VAL A 379 SER A 385 -1 N VAL A 380 O VAL A 432 SHEET 5 F 5 LYS A 393 VAL A 394 -1 O LYS A 393 N VAL A 384 LINK S1' MTE A 501 MO1 MOM A 502 1555 1555 2.31 LINK S2' MTE A 501 MO1 MOM A 502 1555 1555 2.41 CISPEP 1 LYS A 113 PRO A 114 0 -2.67 CISPEP 2 PHE A 285 PRO A 286 0 2.96 CISPEP 3 GLN A 353 PRO A 354 0 -0.43 SITE 1 AC1 5 ARG A 190 LEU A 202 TRP A 204 TYR A 322 SITE 2 AC1 5 MOM A 502 SITE 1 AC2 17 PHE A 135 PHE A 136 THR A 137 ARG A 138 SITE 2 AC2 17 HIS A 140 ASP A 244 TYR A 252 HIS A 283 SITE 3 AC2 17 ARG A 288 GLY A 296 ALA A 297 SER A 299 SITE 4 AC2 17 VAL A 300 LYS A 301 TRP A 302 TYR A 322 SITE 5 AC2 17 MOM A 502 SITE 1 AC3 8 ARG A 138 SER A 185 ALA A 186 VAL A 295 SITE 2 AC3 8 ALA A 297 TYR A 322 MTE A 501 SO3 A1257 CRYST1 86.284 86.284 152.339 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006564 0.00000