HEADER OXIDOREDUCTASE 04-MAY-09 3HBQ TITLE STRUCTURE OF RECOMBINANT CHICKEN LIVER SULFITE OXIDASE MUTANT CYS 185 TITLE 2 ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULPHITE OXIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RCSO C185A RESIDUES 94 TO 466; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_TAXID: 9031; SOURCE 4 GENE: SULFITE OXIDASE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TP1000; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A RCSO C185A KEYWDS MOLYBDENUM, MOLYBDOPTERIN, OXOTRANSFERASE, METAL BINDING, SULFITE KEYWDS 2 OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.QIU REVDAT 5 06-SEP-23 3HBQ 1 REMARK REVDAT 4 01-NOV-17 3HBQ 1 REMARK REVDAT 3 13-JUL-11 3HBQ 1 VERSN REVDAT 2 19-MAY-10 3HBQ 1 JRNL REVDAT 1 14-APR-10 3HBQ 0 JRNL AUTH J.A.QIU,H.L.WILSON,M.J.PUSHIE,C.KISKER,G.N.GEORGE, JRNL AUTH 2 K.V.RAJAGOPALAN JRNL TITL THE STRUCTURES OF THE C185S AND C185A MUTANTS OF SULFITE JRNL TITL 2 OXIDASE REVEAL REARRANGEMENT OF THE ACTIVE SITE. JRNL REF BIOCHEMISTRY V. 49 3989 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20356030 JRNL DOI 10.1021/BI1001954 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 12963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 865 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2879 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.819 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3001 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4110 ; 1.611 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.416 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;33.029 ;22.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;15.976 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;25.010 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2373 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1867 ; 0.681 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3014 ; 1.253 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1134 ; 1.942 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1096 ; 3.235 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7700 -14.9290 -31.6610 REMARK 3 T TENSOR REMARK 3 T11: 0.5153 T22: 0.3734 REMARK 3 T33: 0.0310 T12: -0.1347 REMARK 3 T13: -0.0404 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.9926 L22: 2.9057 REMARK 3 L33: 3.6355 L12: -0.6564 REMARK 3 L13: 0.2628 L23: -1.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: -0.0369 S13: 0.1864 REMARK 3 S21: 0.2846 S22: -0.0774 S23: -0.1565 REMARK 3 S31: -0.9593 S32: 0.0984 S33: 0.0449 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8440 -28.4230 -32.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.2610 REMARK 3 T33: 0.0297 T12: -0.0197 REMARK 3 T13: -0.0071 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.7491 L22: 2.1312 REMARK 3 L33: 4.8650 L12: -0.1737 REMARK 3 L13: -0.4252 L23: -0.3115 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.0821 S13: -0.0301 REMARK 3 S21: -0.0366 S22: 0.0044 S23: -0.0890 REMARK 3 S31: -0.1447 S32: 0.2839 S33: 0.0436 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1830 -23.3310 -26.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.3518 T22: 0.4101 REMARK 3 T33: 0.0171 T12: -0.0205 REMARK 3 T13: -0.0237 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.5904 L22: 2.9184 REMARK 3 L33: 4.0866 L12: 0.4652 REMARK 3 L13: -0.6000 L23: -0.6947 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: -0.0652 S13: 0.0710 REMARK 3 S21: 0.1258 S22: 0.0726 S23: 0.1237 REMARK 3 S31: -0.4984 S32: -0.1105 S33: 0.0510 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1000 -32.6400 -40.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.4636 REMARK 3 T33: 0.3059 T12: 0.0097 REMARK 3 T13: -0.1169 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 5.8452 L22: 5.3321 REMARK 3 L33: 6.5707 L12: -0.1905 REMARK 3 L13: 0.5537 L23: 5.8623 REMARK 3 S TENSOR REMARK 3 S11: -0.3777 S12: 0.3999 S13: -0.7199 REMARK 3 S21: -0.6963 S22: -0.4483 S23: 0.9157 REMARK 3 S31: -0.8137 S32: -0.4641 S33: 0.8260 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3730 -33.6120 -48.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.2935 T22: 0.4953 REMARK 3 T33: 0.0971 T12: -0.0764 REMARK 3 T13: 0.0616 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 3.4302 L22: 3.1655 REMARK 3 L33: 5.5156 L12: -0.3125 REMARK 3 L13: -1.2936 L23: -0.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.1760 S13: 0.0846 REMARK 3 S21: -0.4564 S22: -0.1878 S23: -0.5419 REMARK 3 S31: -0.2980 S32: 0.8878 S33: 0.1326 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 466 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0750 -34.2540 -50.3020 REMARK 3 T TENSOR REMARK 3 T11: 0.3328 T22: 0.4997 REMARK 3 T33: 0.0448 T12: -0.0439 REMARK 3 T13: 0.0505 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 2.0369 L22: 3.1896 REMARK 3 L33: 4.5783 L12: -0.6600 REMARK 3 L13: 0.5858 L23: 0.7216 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.3354 S13: 0.2130 REMARK 3 S21: -0.5885 S22: -0.0930 S23: -0.3113 REMARK 3 S31: -0.3524 S32: 0.5255 S33: 0.0872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 4000 AND 150 MM AMMONIUM REMARK 280 SULFATE, AND 100 MM MES PH 6.0 , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 43.14200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.49550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.24775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.14200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.74325 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.14200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.49550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.14200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 114.74325 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.14200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.24775 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -86.28400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 PRO A 5 REMARK 465 GLU A 6 REMARK 465 TYR A 7 REMARK 465 THR A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 HIS A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ARG A 21 REMARK 465 VAL A 22 REMARK 465 TRP A 23 REMARK 465 VAL A 24 REMARK 465 THR A 25 REMARK 465 HIS A 26 REMARK 465 GLY A 27 REMARK 465 THR A 28 REMARK 465 ASP A 29 REMARK 465 VAL A 30 REMARK 465 PHE A 31 REMARK 465 ASP A 32 REMARK 465 VAL A 33 REMARK 465 THR A 34 REMARK 465 ASP A 35 REMARK 465 PHE A 36 REMARK 465 VAL A 37 REMARK 465 GLU A 38 REMARK 465 LEU A 39 REMARK 465 HIS A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 GLY A 43 REMARK 465 PRO A 44 REMARK 465 ASP A 45 REMARK 465 LYS A 46 REMARK 465 ILE A 47 REMARK 465 LEU A 48 REMARK 465 LEU A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 53 REMARK 465 ALA A 54 REMARK 465 LEU A 55 REMARK 465 GLU A 56 REMARK 465 PRO A 57 REMARK 465 PHE A 58 REMARK 465 TRP A 59 REMARK 465 ALA A 60 REMARK 465 LEU A 61 REMARK 465 TYR A 62 REMARK 465 ALA A 63 REMARK 465 VAL A 64 REMARK 465 HIS A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 465 PRO A 68 REMARK 465 HIS A 69 REMARK 465 VAL A 70 REMARK 465 LEU A 71 REMARK 465 GLU A 72 REMARK 465 LEU A 73 REMARK 465 LEU A 74 REMARK 465 GLN A 75 REMARK 465 GLN A 76 REMARK 465 TYR A 77 REMARK 465 LYS A 78 REMARK 465 VAL A 79 REMARK 465 GLY A 80 REMARK 465 GLU A 81 REMARK 465 LEU A 82 REMARK 465 SER A 83 REMARK 465 PRO A 84 REMARK 465 ASP A 85 REMARK 465 GLU A 86 REMARK 465 ALA A 87 REMARK 465 PRO A 88 REMARK 465 ALA A 89 REMARK 465 ALA A 90 REMARK 465 PRO A 91 REMARK 465 ASP A 92 REMARK 465 ALA A 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 148 O HOH A 513 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 205 -139.13 -98.31 REMARK 500 GLN A 343 -84.03 -118.97 REMARK 500 ARG A 381 144.07 -171.55 REMARK 500 THR A 455 11.22 -142.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MOM A 502 MO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MTE A 501 S1' REMARK 620 2 MOM A 502 OM3 143.4 REMARK 620 3 MOM A 502 OM1 120.7 95.8 REMARK 620 4 MOM A 502 OM2 92.3 76.0 102.0 REMARK 620 5 MTE A 501 S2' 86.1 84.2 109.6 144.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOM A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SOX RELATED DB: PDB REMARK 900 STRUCTURE OF CHICKEN LIVER SULFITE OXIDASE PURIFIED FROM HEPATIC REMARK 900 TISSUE REMARK 900 RELATED ID: 2A99 RELATED DB: PDB REMARK 900 STRUCTURE OF RECOMBINANT CHICKEN SULFITE OXIDASE CRYSTALLIZED IN REMARK 900 THE RESTING STATE REMARK 900 RELATED ID: 2A9A RELATED DB: PDB REMARK 900 STRUCTURE OF RECOMBINANT CHICKEN SULFITE OXIDASE CRYSTALLIZED WITH REMARK 900 SULFATE DBREF 3HBQ A 1 466 PDB 3HBQ 3HBQ 1 466 SEQRES 1 A 466 ALA PRO SER TYR PRO GLU TYR THR ARG GLU GLU VAL GLY SEQRES 2 A 466 ARG HIS ARG SER PRO GLU GLU ARG VAL TRP VAL THR HIS SEQRES 3 A 466 GLY THR ASP VAL PHE ASP VAL THR ASP PHE VAL GLU LEU SEQRES 4 A 466 HIS PRO GLY GLY PRO ASP LYS ILE LEU LEU ALA ALA GLY SEQRES 5 A 466 GLY ALA LEU GLU PRO PHE TRP ALA LEU TYR ALA VAL HIS SEQRES 6 A 466 GLY GLU PRO HIS VAL LEU GLU LEU LEU GLN GLN TYR LYS SEQRES 7 A 466 VAL GLY GLU LEU SER PRO ASP GLU ALA PRO ALA ALA PRO SEQRES 8 A 466 ASP ALA GLN ASP PRO PHE ALA GLY ASP PRO PRO ARG HIS SEQRES 9 A 466 PRO GLY LEU ARG VAL ASN SER GLN LYS PRO PHE ASN ALA SEQRES 10 A 466 GLU PRO PRO ALA GLU LEU LEU ALA GLU ARG PHE LEU THR SEQRES 11 A 466 PRO ASN GLU LEU PHE PHE THR ARG ASN HIS LEU PRO VAL SEQRES 12 A 466 PRO ALA VAL GLU PRO SER SER TYR ARG LEU ARG VAL ASP SEQRES 13 A 466 GLY PRO GLY GLY GLY THR LEU SER LEU SER LEU ALA GLU SEQRES 14 A 466 LEU ARG SER ARG PHE PRO LYS HIS GLU VAL THR ALA THR SEQRES 15 A 466 LEU GLN ALA ALA GLY ASN ARG ARG SER GLU MET SER ARG SEQRES 16 A 466 VAL ARG PRO VAL LYS GLY LEU PRO TRP ASP ILE GLY ALA SEQRES 17 A 466 ILE SER THR ALA ARG TRP GLY GLY ALA ARG LEU ARG ASP SEQRES 18 A 466 VAL LEU LEU HIS ALA GLY PHE PRO GLU GLU LEU GLN GLY SEQRES 19 A 466 GLU TRP HIS VAL CYS PHE GLU GLY LEU ASP ALA ASP PRO SEQRES 20 A 466 GLY GLY ALA PRO TYR GLY ALA SER ILE PRO TYR GLY ARG SEQRES 21 A 466 ALA LEU SER PRO ALA ALA ASP VAL LEU LEU ALA TYR GLU SEQRES 22 A 466 MET ASN GLY THR GLU LEU PRO ARG ASP HIS GLY PHE PRO SEQRES 23 A 466 VAL ARG VAL VAL VAL PRO GLY VAL VAL GLY ALA ARG SER SEQRES 24 A 466 VAL LYS TRP LEU ARG ARG VAL ALA VAL SER PRO ASP GLU SEQRES 25 A 466 SER PRO SER HIS TRP GLN GLN ASN ASP TYR LYS GLY PHE SEQRES 26 A 466 SER PRO CYS VAL ASP TRP ASP THR VAL ASP TYR ARG THR SEQRES 27 A 466 ALA PRO ALA ILE GLN GLU LEU PRO VAL GLN SER ALA VAL SEQRES 28 A 466 THR GLN PRO ARG PRO GLY ALA ALA VAL PRO PRO GLY GLU SEQRES 29 A 466 LEU THR VAL LYS GLY TYR ALA TRP SER GLY GLY GLY ARG SEQRES 30 A 466 GLU VAL VAL ARG VAL ASP VAL SER LEU ASP GLY GLY ARG SEQRES 31 A 466 THR TRP LYS VAL ALA ARG LEU MET GLY ASP LYS ALA PRO SEQRES 32 A 466 PRO GLY ARG ALA TRP ALA TRP ALA LEU TRP GLU LEU THR SEQRES 33 A 466 VAL PRO VAL GLU ALA GLY THR GLU LEU GLU ILE VAL CYS SEQRES 34 A 466 LYS ALA VAL ASP SER SER TYR ASN VAL GLN PRO ASP SER SEQRES 35 A 466 VAL ALA PRO ILE TRP ASN LEU ARG GLY VAL LEU SER THR SEQRES 36 A 466 ALA TRP HIS ARG VAL ARG VAL SER VAL GLN ASP HET MTE A 501 24 HET MOM A 502 4 HET GOL A1001 6 HETNAM MTE PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, HETNAM 2 MTE 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA- HETNAM 3 MTE ANTHRACEN-7-YLMETHYL)ESTER HETNAM MOM HYDROXY(DIOXO)MOLYBDENUM HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MTE C10 H14 N5 O6 P S2 FORMUL 3 MOM H MO O3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *48(H2 O) HELIX 1 1 PRO A 120 ALA A 125 1 6 HELIX 2 2 LEU A 167 ARG A 173 1 7 HELIX 3 3 ARG A 189 ARG A 197 1 9 HELIX 4 4 LEU A 219 GLY A 227 1 9 HELIX 5 5 TYR A 258 SER A 263 1 6 HELIX 6 6 PRO A 264 ASP A 267 5 4 HELIX 7 7 PRO A 280 GLY A 284 5 5 HELIX 8 8 VAL A 295 SER A 299 5 5 HELIX 9 9 SER A 315 ASN A 320 1 6 HELIX 10 10 ASP A 335 ALA A 339 5 5 HELIX 11 11 VAL A 443 TRP A 447 5 5 SHEET 1 A 3 ARG A 108 SER A 111 0 SHEET 2 A 3 ASN A 116 GLU A 118 -1 O GLU A 118 N ARG A 108 SHEET 3 A 3 THR A 137 ARG A 138 -1 O THR A 137 N ALA A 117 SHEET 1 B 5 THR A 162 SER A 166 0 SHEET 2 B 5 ARG A 152 ASP A 156 -1 N LEU A 153 O LEU A 165 SHEET 3 B 5 LEU A 303 SER A 309 1 O ARG A 304 N ARG A 154 SHEET 4 B 5 HIS A 237 ALA A 245 -1 N HIS A 237 O SER A 309 SHEET 5 B 5 PRO A 251 PRO A 257 -1 O ALA A 254 N PHE A 240 SHEET 1 C 4 HIS A 177 GLN A 184 0 SHEET 2 C 4 ILE A 209 ARG A 218 -1 O TRP A 214 N VAL A 179 SHEET 3 C 4 LEU A 269 MET A 274 -1 O LEU A 270 N ALA A 217 SHEET 4 C 4 THR A 277 GLU A 278 -1 O THR A 277 N MET A 274 SHEET 1 D 4 HIS A 177 GLN A 184 0 SHEET 2 D 4 ILE A 209 ARG A 218 -1 O TRP A 214 N VAL A 179 SHEET 3 D 4 LEU A 269 MET A 274 -1 O LEU A 270 N ALA A 217 SHEET 4 D 4 ARG A 288 VAL A 290 -1 O VAL A 290 N LEU A 269 SHEET 1 E 4 GLN A 348 GLN A 353 0 SHEET 2 E 4 GLY A 363 TRP A 372 -1 O TRP A 372 N GLN A 348 SHEET 3 E 4 ALA A 411 VAL A 419 -1 O ALA A 411 N ALA A 371 SHEET 4 E 4 ARG A 396 MET A 398 -1 N MET A 398 O LEU A 412 SHEET 1 F 5 ALA A 359 VAL A 360 0 SHEET 2 F 5 HIS A 458 VAL A 464 1 O SER A 463 N VAL A 360 SHEET 3 F 5 GLU A 424 ASP A 433 -1 N LEU A 425 O VAL A 462 SHEET 4 F 5 VAL A 379 SER A 385 -1 N SER A 385 O VAL A 428 SHEET 5 F 5 LYS A 393 VAL A 394 -1 O LYS A 393 N VAL A 384 LINK S1' MTE A 501 MO1 MOM A 502 1555 1555 2.33 LINK S2' MTE A 501 MO1 MOM A 502 1555 1555 2.29 CISPEP 1 LYS A 113 PRO A 114 0 -0.15 CISPEP 2 PHE A 285 PRO A 286 0 2.75 CISPEP 3 GLN A 353 PRO A 354 0 7.02 SITE 1 AC1 16 PHE A 135 PHE A 136 THR A 137 ARG A 138 SITE 2 AC1 16 HIS A 140 ASP A 244 TYR A 252 HIS A 283 SITE 3 AC1 16 ARG A 288 GLY A 296 ALA A 297 SER A 299 SITE 4 AC1 16 LYS A 301 TRP A 302 TYR A 322 MOM A 502 SITE 1 AC2 7 ARG A 138 ALA A 185 ALA A 186 ALA A 297 SITE 2 AC2 7 TYR A 322 MTE A 501 GOL A1001 SITE 1 AC3 7 ARG A 138 ALA A 186 GLY A 187 ARG A 190 SITE 2 AC3 7 LEU A 202 TYR A 322 MOM A 502 CRYST1 86.284 86.284 152.991 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006536 0.00000