HEADER LYASE 06-MAY-09 3HCP TITLE HUMAN FERROCHELATASE WITH MN AND DEUTEROPORPHYRIN BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROCHELATASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 65-423; COMPND 5 SYNONYM: PROTOHEME FERRO-LYASE, HEME SYNTHETASE; COMPND 6 EC: 4.99.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FECH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FERROCHELATASE, METAL SELECTIVITY, DISEASE MUTATION, HEME KEYWDS 2 BIOSYNTHESIS, IRON, IRON-SULFUR, LYASE, MEMBRANE, METAL-BINDING, KEYWDS 3 MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, PORPHYRIN BIOSYNTHESIS, KEYWDS 4 TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MEDLOCK,H.A.DAILEY,W.N.LANZILOTTA REVDAT 4 21-FEB-24 3HCP 1 REMARK SEQADV LINK REVDAT 3 24-JUL-19 3HCP 1 REMARK REVDAT 2 13-JUL-11 3HCP 1 VERSN REVDAT 1 10-NOV-09 3HCP 0 JRNL AUTH A.E.MEDLOCK,M.CARTER,T.A.DAILEY,H.A.DAILEY,W.N.LANZILOTTA JRNL TITL PRODUCT RELEASE RATHER THAN CHELATION DETERMINES METAL JRNL TITL 2 SPECIFICITY FOR FERROCHELATASE. JRNL REF J.MOL.BIOL. V. 393 308 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19703464 JRNL DOI 10.1016/J.JMB.2009.08.042 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 116112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3814 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.2180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 218 REMARK 3 SOLVENT ATOMS : 534 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6235 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8504 ; 2.020 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 740 ; 5.610 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;35.309 ;23.616 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1082 ;14.216 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;17.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 939 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4644 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2940 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4289 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 469 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3749 ; 1.070 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5929 ; 1.643 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2841 ; 2.722 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2555 ; 4.184 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 86.266 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116202 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 -TRIS, 20% PENTAERYTHRITOLETHYLOXYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.78700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.74150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.84350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.74150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.78700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.84350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 623 O2A FDE B 925 1.97 REMARK 500 OD2 ASP A 383 O HOH A 505 1.98 REMARK 500 O HOH B 288 O HOH B 523 2.06 REMARK 500 OE2 GLU B 843 O HOH B 523 2.09 REMARK 500 O HOH A 586 O HOH B 461 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 726 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 726 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 103 53.08 34.93 REMARK 500 THR A 198 -84.23 -116.15 REMARK 500 TRP A 227 53.27 -163.85 REMARK 500 TYR A 346 -66.28 -100.80 REMARK 500 ILE A 350 -62.79 -107.30 REMARK 500 VAL A 355 -61.21 -96.67 REMARK 500 ASN A 372 -118.64 50.45 REMARK 500 ASN A 392 18.22 58.79 REMARK 500 ILE B 603 52.30 27.10 REMARK 500 THR B 698 -87.49 -113.85 REMARK 500 TRP B 727 54.95 -164.61 REMARK 500 TYR B 846 -64.51 -101.42 REMARK 500 ILE B 850 -63.93 -104.95 REMARK 500 VAL B 855 -68.30 -92.50 REMARK 500 ASN B 872 -115.42 45.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 196 SG REMARK 620 2 FES A 501 S1 112.3 REMARK 620 3 FES A 501 S2 111.5 102.3 REMARK 620 4 CYS A 403 SG 95.9 112.7 122.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 406 SG REMARK 620 2 FES A 501 S1 113.0 REMARK 620 3 FES A 501 S2 110.2 101.9 REMARK 620 4 CYS A 411 SG 104.0 107.2 120.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FDE A 425 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 424 N1 REMARK 620 2 FDE A 425 NA 92.3 REMARK 620 3 FDE A 425 NB 91.0 90.0 REMARK 620 4 FDE A 425 NC 88.2 179.5 89.9 REMARK 620 5 FDE A 425 ND 88.4 91.4 178.5 88.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 696 SG REMARK 620 2 FES B 501 S1 112.0 REMARK 620 3 FES B 501 S2 110.0 102.4 REMARK 620 4 CYS B 903 SG 97.7 114.5 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 906 SG REMARK 620 2 FES B 501 S1 114.6 REMARK 620 3 FES B 501 S2 111.2 101.2 REMARK 620 4 CYS B 911 SG 103.3 105.5 121.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FDE B 925 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD B 924 N1 REMARK 620 2 FDE B 925 NA 89.9 REMARK 620 3 FDE B 925 NB 89.0 92.1 REMARK 620 4 FDE B 925 NC 89.9 178.9 89.0 REMARK 620 5 FDE B 925 ND 89.9 89.8 177.8 89.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDE A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 924 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDE B 925 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HCN RELATED DB: PDB REMARK 900 RELATED ID: 3HCO RELATED DB: PDB REMARK 900 RELATED ID: 3HCR RELATED DB: PDB DBREF 3HCP A 65 423 UNP P22830 HEMH_HUMAN 65 423 DBREF 3HCP B 565 923 UNP P22830 HEMH_HUMAN 65 423 SEQADV 3HCP ALA A 110 UNP P22830 PHE 110 VARIANT SEQADV 3HCP ALA B 610 UNP P22830 PHE 110 VARIANT SEQRES 1 A 359 ARG LYS PRO LYS THR GLY ILE LEU MET LEU ASN MET GLY SEQRES 2 A 359 GLY PRO GLU THR LEU GLY ASP VAL HIS ASP PHE LEU LEU SEQRES 3 A 359 ARG LEU PHE LEU ASP ARG ASP LEU MET THR LEU PRO ILE SEQRES 4 A 359 GLN ASN LYS LEU ALA PRO ALA ILE ALA LYS ARG ARG THR SEQRES 5 A 359 PRO LYS ILE GLN GLU GLN TYR ARG ARG ILE GLY GLY GLY SEQRES 6 A 359 SER PRO ILE LYS ILE TRP THR SER LYS GLN GLY GLU GLY SEQRES 7 A 359 MET VAL LYS LEU LEU ASP GLU LEU SER PRO ASN THR ALA SEQRES 8 A 359 PRO HIS LYS TYR TYR ILE GLY PHE ARG TYR VAL HIS PRO SEQRES 9 A 359 LEU THR GLU GLU ALA ILE GLU GLU MET GLU ARG ASP GLY SEQRES 10 A 359 LEU GLU ARG ALA ILE ALA PHE THR GLN TYR PRO GLN TYR SEQRES 11 A 359 SER CYS SER THR THR GLY SER SER LEU ASN ALA ILE TYR SEQRES 12 A 359 ARG TYR TYR ASN GLN VAL GLY ARG LYS PRO THR MET LYS SEQRES 13 A 359 TRP SER THR ILE ASP ARG TRP PRO THR HIS HIS LEU LEU SEQRES 14 A 359 ILE GLN CYS PHE ALA ASP HIS ILE LEU LYS GLU LEU ASP SEQRES 15 A 359 HIS PHE PRO LEU GLU LYS ARG SER GLU VAL VAL ILE LEU SEQRES 16 A 359 PHE SER ALA HIS SER LEU PRO MET SER VAL VAL ASN ARG SEQRES 17 A 359 GLY ASP PRO TYR PRO GLN GLU VAL SER ALA THR VAL GLN SEQRES 18 A 359 LYS VAL MET GLU ARG LEU GLU TYR CYS ASN PRO TYR ARG SEQRES 19 A 359 LEU VAL TRP GLN SER LYS VAL GLY PRO MET PRO TRP LEU SEQRES 20 A 359 GLY PRO GLN THR ASP GLU SER ILE LYS GLY LEU CYS GLU SEQRES 21 A 359 ARG GLY ARG LYS ASN ILE LEU LEU VAL PRO ILE ALA PHE SEQRES 22 A 359 THR SER ASP HIS ILE GLU THR LEU TYR GLU LEU ASP ILE SEQRES 23 A 359 GLU TYR SER GLN VAL LEU ALA LYS GLU CYS GLY VAL GLU SEQRES 24 A 359 ASN ILE ARG ARG ALA GLU SER LEU ASN GLY ASN PRO LEU SEQRES 25 A 359 PHE SER LYS ALA LEU ALA ASP LEU VAL HIS SER HIS ILE SEQRES 26 A 359 GLN SER ASN GLU LEU CYS SER LYS GLN LEU THR LEU SER SEQRES 27 A 359 CYS PRO LEU CYS VAL ASN PRO VAL CYS ARG GLU THR LYS SEQRES 28 A 359 SER PHE PHE THR SER GLN GLN LEU SEQRES 1 B 359 ARG LYS PRO LYS THR GLY ILE LEU MET LEU ASN MET GLY SEQRES 2 B 359 GLY PRO GLU THR LEU GLY ASP VAL HIS ASP PHE LEU LEU SEQRES 3 B 359 ARG LEU PHE LEU ASP ARG ASP LEU MET THR LEU PRO ILE SEQRES 4 B 359 GLN ASN LYS LEU ALA PRO ALA ILE ALA LYS ARG ARG THR SEQRES 5 B 359 PRO LYS ILE GLN GLU GLN TYR ARG ARG ILE GLY GLY GLY SEQRES 6 B 359 SER PRO ILE LYS ILE TRP THR SER LYS GLN GLY GLU GLY SEQRES 7 B 359 MET VAL LYS LEU LEU ASP GLU LEU SER PRO ASN THR ALA SEQRES 8 B 359 PRO HIS LYS TYR TYR ILE GLY PHE ARG TYR VAL HIS PRO SEQRES 9 B 359 LEU THR GLU GLU ALA ILE GLU GLU MET GLU ARG ASP GLY SEQRES 10 B 359 LEU GLU ARG ALA ILE ALA PHE THR GLN TYR PRO GLN TYR SEQRES 11 B 359 SER CYS SER THR THR GLY SER SER LEU ASN ALA ILE TYR SEQRES 12 B 359 ARG TYR TYR ASN GLN VAL GLY ARG LYS PRO THR MET LYS SEQRES 13 B 359 TRP SER THR ILE ASP ARG TRP PRO THR HIS HIS LEU LEU SEQRES 14 B 359 ILE GLN CYS PHE ALA ASP HIS ILE LEU LYS GLU LEU ASP SEQRES 15 B 359 HIS PHE PRO LEU GLU LYS ARG SER GLU VAL VAL ILE LEU SEQRES 16 B 359 PHE SER ALA HIS SER LEU PRO MET SER VAL VAL ASN ARG SEQRES 17 B 359 GLY ASP PRO TYR PRO GLN GLU VAL SER ALA THR VAL GLN SEQRES 18 B 359 LYS VAL MET GLU ARG LEU GLU TYR CYS ASN PRO TYR ARG SEQRES 19 B 359 LEU VAL TRP GLN SER LYS VAL GLY PRO MET PRO TRP LEU SEQRES 20 B 359 GLY PRO GLN THR ASP GLU SER ILE LYS GLY LEU CYS GLU SEQRES 21 B 359 ARG GLY ARG LYS ASN ILE LEU LEU VAL PRO ILE ALA PHE SEQRES 22 B 359 THR SER ASP HIS ILE GLU THR LEU TYR GLU LEU ASP ILE SEQRES 23 B 359 GLU TYR SER GLN VAL LEU ALA LYS GLU CYS GLY VAL GLU SEQRES 24 B 359 ASN ILE ARG ARG ALA GLU SER LEU ASN GLY ASN PRO LEU SEQRES 25 B 359 PHE SER LYS ALA LEU ALA ASP LEU VAL HIS SER HIS ILE SEQRES 26 B 359 GLN SER ASN GLU LEU CYS SER LYS GLN LEU THR LEU SER SEQRES 27 B 359 CYS PRO LEU CYS VAL ASN PRO VAL CYS ARG GLU THR LYS SEQRES 28 B 359 SER PHE PHE THR SER GLN GLN LEU HET FES A 501 4 HET CHD A 2 29 HET CHD A 3 29 HET GOL A 1 6 HET IMD A 424 5 HET FDE A 425 39 HET FES B 501 4 HET CHD B 1 29 HET CHD B 4 29 HET IMD B 924 5 HET FDE B 925 39 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM CHD CHOLIC ACID HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETNAM FDE FE(III) DEUTEROPORPHYRIN IX HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FES 2(FE2 S2) FORMUL 4 CHD 4(C24 H40 O5) FORMUL 6 GOL C3 H8 O3 FORMUL 7 IMD 2(C3 H5 N2 1+) FORMUL 8 FDE 2(C30 H28 FE N4 O4) FORMUL 14 HOH *534(H2 O) HELIX 1 1 THR A 81 GLY A 83 5 3 HELIX 2 2 ASP A 84 LEU A 94 1 11 HELIX 3 3 ILE A 103 ILE A 126 1 24 HELIX 4 4 PRO A 131 SER A 151 1 21 HELIX 5 5 LEU A 169 ASP A 180 1 12 HELIX 6 6 THR A 198 GLY A 214 1 17 HELIX 7 7 HIS A 230 ASP A 246 1 17 HELIX 8 8 HIS A 247 PHE A 248 5 2 HELIX 9 9 PRO A 249 VAL A 256 5 8 HELIX 10 10 PRO A 266 ASN A 271 1 6 HELIX 11 11 PRO A 275 LEU A 291 1 17 HELIX 12 12 GLN A 314 ARG A 325 1 12 HELIX 13 13 HIS A 341 TYR A 346 1 6 HELIX 14 14 VAL A 355 CYS A 360 1 6 HELIX 15 15 ASN A 374 ASN A 392 1 19 HELIX 16 16 SER A 396 LEU A 401 5 6 HELIX 17 17 PRO A 409 SER A 420 1 12 HELIX 18 18 THR B 581 GLY B 583 5 3 HELIX 19 19 ASP B 584 LEU B 594 1 11 HELIX 20 20 ILE B 603 ILE B 626 1 24 HELIX 21 21 PRO B 631 SER B 651 1 21 HELIX 22 22 PRO B 652 ALA B 655 5 4 HELIX 23 23 LEU B 669 ASP B 680 1 12 HELIX 24 24 THR B 698 GLY B 714 1 17 HELIX 25 25 HIS B 730 ASP B 746 1 17 HELIX 26 26 HIS B 747 PHE B 748 5 2 HELIX 27 27 PRO B 749 VAL B 756 5 8 HELIX 28 28 PRO B 766 ASN B 771 1 6 HELIX 29 29 PRO B 775 LEU B 791 1 17 HELIX 30 30 GLN B 814 ARG B 825 1 12 HELIX 31 31 HIS B 841 TYR B 846 1 6 HELIX 32 32 VAL B 855 CYS B 860 1 6 HELIX 33 33 ASN B 874 ASN B 892 1 19 HELIX 34 34 SER B 896 LEU B 901 5 6 HELIX 35 35 PRO B 909 SER B 920 1 12 SHEET 1 A 4 HIS A 157 PHE A 163 0 SHEET 2 A 4 THR A 69 ASN A 75 1 N ILE A 71 O TYR A 160 SHEET 3 A 4 ARG A 184 THR A 189 1 O PHE A 188 N LEU A 72 SHEET 4 A 4 LYS A 220 ILE A 224 1 O LYS A 220 N ALA A 185 SHEET 1 B 4 TYR A 297 GLN A 302 0 SHEET 2 B 4 VAL A 257 HIS A 263 1 N ALA A 262 O GLN A 302 SHEET 3 B 4 ASN A 329 PRO A 334 1 O LEU A 331 N VAL A 257 SHEET 4 B 4 ASN A 364 ARG A 367 1 O ARG A 366 N LEU A 332 SHEET 1 C 4 HIS B 657 PHE B 663 0 SHEET 2 C 4 THR B 569 ASN B 575 1 N MET B 573 O TYR B 660 SHEET 3 C 4 ARG B 684 THR B 689 1 O ARG B 684 N GLY B 570 SHEET 4 C 4 LYS B 720 ILE B 724 1 O LYS B 720 N ALA B 685 SHEET 1 D 4 TYR B 797 GLN B 802 0 SHEET 2 D 4 VAL B 757 HIS B 763 1 N PHE B 760 O VAL B 800 SHEET 3 D 4 ASN B 829 PRO B 834 1 O LEU B 831 N VAL B 757 SHEET 4 D 4 ASN B 864 ARG B 867 1 O ARG B 866 N LEU B 832 LINK SG CYS A 196 FE2 FES A 501 1555 1555 2.34 LINK SG CYS A 403 FE2 FES A 501 1555 1555 2.33 LINK SG CYS A 406 FE1 FES A 501 1555 1555 2.34 LINK SG CYS A 411 FE1 FES A 501 1555 1555 2.33 LINK N1 IMD A 424 FE FDE A 425 1555 1555 1.93 LINK FE2 FES B 501 SG CYS B 696 1555 1555 2.32 LINK FE2 FES B 501 SG CYS B 903 1555 1555 2.33 LINK FE1 FES B 501 SG CYS B 906 1555 1555 2.33 LINK FE1 FES B 501 SG CYS B 911 1555 1555 2.34 LINK N1 IMD B 924 FE FDE B 925 1555 1555 1.91 CISPEP 1 ALA A 155 PRO A 156 0 -6.24 CISPEP 2 HIS A 167 PRO A 168 0 -6.23 CISPEP 3 GLY A 312 PRO A 313 0 6.01 CISPEP 4 ALA B 655 PRO B 656 0 -4.19 CISPEP 5 HIS B 667 PRO B 668 0 -4.89 CISPEP 6 GLY B 812 PRO B 813 0 6.24 SITE 1 AC1 6 CYS A 196 ARG A 272 SER A 402 CYS A 403 SITE 2 AC1 6 CYS A 406 CYS A 411 SITE 1 AC2 6 PHE A 93 ARG A 114 ARG A 115 PRO A 266 SITE 2 AC2 6 FDE A 425 HOH A 460 SITE 1 AC3 15 GLU A 80 ILE A 126 GLY A 127 GLY A 129 SITE 2 AC3 15 LEU A 345 THR A 400 ARG A 412 LYS A 415 SITE 3 AC3 15 HOH A 446 HOH A 580 HOH A 626 HOH A 661 SITE 4 AC3 15 HOH B 377 GLY B 826 ARG B 827 SITE 1 AC4 7 HOH A 15 PRO A 277 SER A 281 TRP A 301 SITE 2 AC4 7 HOH B 139 PRO B 777 SER B 781 SITE 1 AC5 5 HIS A 263 SER A 264 SER A 303 TRP A 310 SITE 2 AC5 5 FDE A 425 SITE 1 AC6 21 CHD A 2 MET A 76 PHE A 88 PHE A 93 SITE 2 AC6 21 LEU A 98 MET A 99 ARG A 115 ILE A 119 SITE 3 AC6 21 TYR A 123 SER A 197 THR A 198 HIS A 263 SITE 4 AC6 21 LEU A 265 PRO A 266 TYR A 276 ILE A 342 SITE 5 AC6 21 GLU A 343 IMD A 424 HOH A 479 HOH A 543 SITE 6 AC6 21 HOH A 564 SITE 1 AC7 6 CYS B 696 ARG B 772 SER B 902 CYS B 903 SITE 2 AC7 6 CYS B 906 CYS B 911 SITE 1 AC8 6 PHE B 593 ARG B 614 ARG B 615 PRO B 766 SITE 2 AC8 6 MET B 808 FDE B 925 SITE 1 AC9 14 GLY A 326 ARG A 327 HOH B 152 HOH B 320 SITE 2 AC9 14 HOH B 471 HOH B 472 GLU B 580 ILE B 626 SITE 3 AC9 14 GLY B 627 GLY B 629 LEU B 845 THR B 900 SITE 4 AC9 14 ARG B 912 LYS B 915 SITE 1 BC1 6 HOH B 523 HIS B 763 SER B 764 SER B 803 SITE 2 BC1 6 TRP B 810 FDE B 925 SITE 1 BC2 21 CHD B 1 HOH B 176 HOH B 228 HOH B 229 SITE 2 BC2 21 HOH B 523 MET B 576 PHE B 588 LEU B 598 SITE 3 BC2 21 ARG B 615 TYR B 623 SER B 697 THR B 698 SITE 4 BC2 21 HIS B 763 LEU B 765 PRO B 766 TYR B 776 SITE 5 BC2 21 PHE B 837 HIS B 841 ILE B 842 GLU B 843 SITE 6 BC2 21 IMD B 924 CRYST1 87.574 93.687 109.483 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009134 0.00000