HEADER SIGNALING PROTEIN 06-MAY-09 3HCS TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF TRAF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RING AND ZINC FINGERS 1-3: UNP RESIDUES 50-211; COMPND 5 SYNONYM: INTERLEUKIN-1 SIGNAL TRANSDUCER, RING FINGER PROTEIN 85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF85, TRAF6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON-PLUS RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CROSS-BRACE, BETA-BETA-ALPHA, COILED COIL, CYTOPLASM, METAL-BINDING, KEYWDS 2 UBL CONJUGATION, UBL CONJUGATION PATHWAY, ZINC, ZINC-FINGER, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.YIN,S.-C.LIN,B.LAMOTHE,M.LU,Y.-C.LO,G.HURA,L.ZHENG,R.L.RICH, AUTHOR 2 A.D.CAMPOS,D.G.MYSZKA,M.J.LENARDO,B.G.DARNAY,H.WU REVDAT 4 21-FEB-24 3HCS 1 REMARK SEQADV REVDAT 3 01-NOV-17 3HCS 1 REMARK REVDAT 2 08-SEP-09 3HCS 1 JRNL REVDAT 1 26-MAY-09 3HCS 0 JRNL AUTH Q.YIN,S.C.LIN,B.LAMOTHE,M.LU,Y.C.LO,G.HURA,L.ZHENG,R.L.RICH, JRNL AUTH 2 A.D.CAMPOS,D.G.MYSZKA,M.J.LENARDO,B.G.DARNAY,H.WU JRNL TITL E2 INTERACTION AND DIMERIZATION IN THE CRYSTAL STRUCTURE OF JRNL TITL 2 TRAF6. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 658 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19465916 JRNL DOI 10.1038/NSMB.1605 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 23334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2321 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.29300 REMARK 3 B22 (A**2) : -2.54700 REMARK 3 B33 (A**2) : 15.84100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.90100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.268 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.199 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.331 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 67.37 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4-9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28220 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.7030 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.19-1.33M AMMONIUM SULFATE, 0.1M CHES REMARK 280 PH 9.4-9.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.83150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.37850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.83150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.37850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 ILE A 53 REMARK 465 ALA A 211 REMARK 465 LEU A 212 REMARK 465 GLU A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 MET B 50 REMARK 465 GLU B 51 REMARK 465 GLU B 52 REMARK 465 ILE B 53 REMARK 465 ALA B 211 REMARK 465 LEU B 212 REMARK 465 GLU B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH A 516 2656 1.84 REMARK 500 O HOH A 491 O HOH A 491 2656 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 209 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO B 209 C - N - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 100 -45.22 178.22 REMARK 500 ASN A 109 12.36 58.99 REMARK 500 GLN A 166 15.21 49.08 REMARK 500 ASN A 207 29.38 -140.56 REMARK 500 PRO A 209 1.15 -62.78 REMARK 500 ASP B 100 -47.06 179.54 REMARK 500 GLN B 206 44.77 -85.92 REMARK 500 ASN B 207 20.72 -166.93 REMARK 500 CYS B 208 -171.80 -57.17 REMARK 500 PRO B 209 93.67 21.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 CYS A 73 SG 107.9 REMARK 620 3 CYS A 90 SG 102.2 101.2 REMARK 620 4 CYS A 93 SG 120.0 114.7 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 85 SG REMARK 620 2 HIS A 87 ND1 107.6 REMARK 620 3 CYS A 105 SG 106.5 121.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 134 SG REMARK 620 2 CYS A 139 SG 108.2 REMARK 620 3 HIS A 151 NE2 103.3 115.7 REMARK 620 4 CYS A 155 SG 109.3 112.1 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 162 SG REMARK 620 2 CYS A 165 SG 114.8 REMARK 620 3 HIS A 177 NE2 114.5 100.6 REMARK 620 4 CYS A 182 SG 107.9 111.5 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 192 SG 113.6 REMARK 620 3 HIS A 204 NE2 95.8 114.8 REMARK 620 4 CYS A 208 SG 97.4 128.4 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 70 SG REMARK 620 2 CYS B 73 SG 106.2 REMARK 620 3 CYS B 90 SG 106.9 108.6 REMARK 620 4 CYS B 93 SG 111.0 118.5 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 85 SG REMARK 620 2 HIS B 87 ND1 111.7 REMARK 620 3 CYS B 105 SG 108.8 117.8 REMARK 620 4 ASP B 108 OD2 106.4 87.3 123.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 134 SG REMARK 620 2 CYS B 139 SG 106.2 REMARK 620 3 HIS B 151 NE2 115.4 112.5 REMARK 620 4 CYS B 155 SG 110.6 105.9 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 162 SG REMARK 620 2 CYS B 165 SG 109.4 REMARK 620 3 HIS B 177 NE2 116.4 100.7 REMARK 620 4 CYS B 182 SG 109.2 112.4 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 310 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 189 SG REMARK 620 2 CYS B 192 SG 106.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HCT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRAF6 IN COMPLEX WITH UBC13 IN THE P1 SPACE REMARK 900 GROUP REMARK 900 RELATED ID: 3HCU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRAF6 IN COMPLEX WITH UBC13 IN THE C2 SPACE REMARK 900 GROUP DBREF 3HCS A 50 211 UNP Q9Y4K3 TRAF6_HUMAN 50 211 DBREF 3HCS B 50 211 UNP Q9Y4K3 TRAF6_HUMAN 50 211 SEQADV 3HCS LEU A 212 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS GLU A 213 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS A 214 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS A 215 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS A 216 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS A 217 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS A 218 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS A 219 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS LEU B 212 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS GLU B 213 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS B 214 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS B 215 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS B 216 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS B 217 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS B 218 UNP Q9Y4K3 EXPRESSION TAG SEQADV 3HCS HIS B 219 UNP Q9Y4K3 EXPRESSION TAG SEQRES 1 A 170 MET GLU GLU ILE GLN GLY TYR ASP VAL GLU PHE ASP PRO SEQRES 2 A 170 PRO LEU GLU SER LYS TYR GLU CYS PRO ILE CYS LEU MET SEQRES 3 A 170 ALA LEU ARG GLU ALA VAL GLN THR PRO CYS GLY HIS ARG SEQRES 4 A 170 PHE CYS LYS ALA CYS ILE ILE LYS SER ILE ARG ASP ALA SEQRES 5 A 170 GLY HIS LYS CYS PRO VAL ASP ASN GLU ILE LEU LEU GLU SEQRES 6 A 170 ASN GLN LEU PHE PRO ASP ASN PHE ALA LYS ARG GLU ILE SEQRES 7 A 170 LEU SER LEU MET VAL LYS CYS PRO ASN GLU GLY CYS LEU SEQRES 8 A 170 HIS LYS MET GLU LEU ARG HIS LEU GLU ASP HIS GLN ALA SEQRES 9 A 170 HIS CYS GLU PHE ALA LEU MET ASP CYS PRO GLN CYS GLN SEQRES 10 A 170 ARG PRO PHE GLN LYS PHE HIS ILE ASN ILE HIS ILE LEU SEQRES 11 A 170 LYS ASP CYS PRO ARG ARG GLN VAL SER CYS ASP ASN CYS SEQRES 12 A 170 ALA ALA SER MET ALA PHE GLU ASP LYS GLU ILE HIS ASP SEQRES 13 A 170 GLN ASN CYS PRO LEU ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS SEQRES 1 B 170 MET GLU GLU ILE GLN GLY TYR ASP VAL GLU PHE ASP PRO SEQRES 2 B 170 PRO LEU GLU SER LYS TYR GLU CYS PRO ILE CYS LEU MET SEQRES 3 B 170 ALA LEU ARG GLU ALA VAL GLN THR PRO CYS GLY HIS ARG SEQRES 4 B 170 PHE CYS LYS ALA CYS ILE ILE LYS SER ILE ARG ASP ALA SEQRES 5 B 170 GLY HIS LYS CYS PRO VAL ASP ASN GLU ILE LEU LEU GLU SEQRES 6 B 170 ASN GLN LEU PHE PRO ASP ASN PHE ALA LYS ARG GLU ILE SEQRES 7 B 170 LEU SER LEU MET VAL LYS CYS PRO ASN GLU GLY CYS LEU SEQRES 8 B 170 HIS LYS MET GLU LEU ARG HIS LEU GLU ASP HIS GLN ALA SEQRES 9 B 170 HIS CYS GLU PHE ALA LEU MET ASP CYS PRO GLN CYS GLN SEQRES 10 B 170 ARG PRO PHE GLN LYS PHE HIS ILE ASN ILE HIS ILE LEU SEQRES 11 B 170 LYS ASP CYS PRO ARG ARG GLN VAL SER CYS ASP ASN CYS SEQRES 12 B 170 ALA ALA SER MET ALA PHE GLU ASP LYS GLU ILE HIS ASP SEQRES 13 B 170 GLN ASN CYS PRO LEU ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 14 B 170 HIS HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN B 306 1 HET ZN B 307 1 HET ZN B 308 1 HET ZN B 309 1 HET ZN B 310 1 HETNAM ZN ZINC ION FORMUL 3 ZN 10(ZN 2+) FORMUL 13 HOH *196(H2 O) HELIX 1 1 GLU A 65 GLU A 69 5 5 HELIX 2 2 LYS A 91 GLY A 102 1 12 HELIX 3 3 LEU A 113 LEU A 117 5 5 HELIX 4 4 ASP A 120 SER A 129 1 10 HELIX 5 5 HIS A 147 ALA A 153 1 7 HELIX 6 6 HIS A 173 ASP A 181 1 9 HELIX 7 7 ASP A 200 GLN A 206 1 7 HELIX 8 8 GLU B 65 GLU B 69 5 5 HELIX 9 9 LYS B 91 GLY B 102 1 12 HELIX 10 10 LEU B 113 LEU B 117 5 5 HELIX 11 11 ASP B 120 SER B 129 1 10 HELIX 12 12 LEU B 145 ALA B 153 1 9 HELIX 13 13 HIS B 173 ASP B 181 1 9 HELIX 14 14 ASP B 200 GLN B 206 1 7 SHEET 1 A 3 GLU A 59 PHE A 60 0 SHEET 2 A 3 MET A 131 LYS A 133 -1 O LYS A 133 N GLU A 59 SHEET 3 A 3 LYS A 142 GLU A 144 -1 O MET A 143 N VAL A 132 SHEET 1 B 3 ARG A 88 CYS A 90 0 SHEET 2 B 3 ALA A 80 GLN A 82 -1 N VAL A 81 O PHE A 89 SHEET 3 B 3 PHE A 118 PRO A 119 -1 O PHE A 118 N GLN A 82 SHEET 1 C 2 LEU A 159 ASP A 161 0 SHEET 2 C 2 PRO A 168 GLN A 170 -1 O PHE A 169 N MET A 160 SHEET 1 D 2 GLN A 186 SER A 188 0 SHEET 2 D 2 SER A 195 ALA A 197 -1 O MET A 196 N VAL A 187 SHEET 1 E 3 ARG B 88 CYS B 90 0 SHEET 2 E 3 ALA B 80 GLN B 82 -1 N VAL B 81 O PHE B 89 SHEET 3 E 3 PHE B 118 PRO B 119 -1 O PHE B 118 N GLN B 82 SHEET 1 F 2 MET B 131 LYS B 133 0 SHEET 2 F 2 LYS B 142 GLU B 144 -1 O MET B 143 N VAL B 132 SHEET 1 G 2 LEU B 159 ASP B 161 0 SHEET 2 G 2 PRO B 168 GLN B 170 -1 O PHE B 169 N MET B 160 SHEET 1 H 2 GLN B 186 SER B 188 0 SHEET 2 H 2 SER B 195 ALA B 197 -1 O MET B 196 N VAL B 187 LINK SG CYS A 70 ZN ZN A 301 1555 1555 2.50 LINK SG CYS A 73 ZN ZN A 301 1555 1555 2.49 LINK SG CYS A 85 ZN ZN A 302 1555 1555 2.43 LINK ND1 HIS A 87 ZN ZN A 302 1555 1555 2.36 LINK SG CYS A 90 ZN ZN A 301 1555 1555 2.60 LINK SG CYS A 93 ZN ZN A 301 1555 1555 2.47 LINK SG CYS A 105 ZN ZN A 302 1555 1555 2.34 LINK SG CYS A 134 ZN ZN A 303 1555 1555 2.46 LINK SG CYS A 139 ZN ZN A 303 1555 1555 2.35 LINK NE2 HIS A 151 ZN ZN A 303 1555 1555 2.22 LINK SG CYS A 155 ZN ZN A 303 1555 1555 2.44 LINK SG CYS A 162 ZN ZN A 304 1555 1555 2.33 LINK SG CYS A 165 ZN ZN A 304 1555 1555 2.47 LINK NE2 HIS A 177 ZN ZN A 304 1555 1555 2.27 LINK SG CYS A 182 ZN ZN A 304 1555 1555 2.45 LINK SG CYS A 189 ZN ZN A 305 1555 1555 2.51 LINK SG CYS A 192 ZN ZN A 305 1555 1555 2.43 LINK NE2 HIS A 204 ZN ZN A 305 1555 1555 2.20 LINK SG CYS A 208 ZN ZN A 305 1555 1555 2.56 LINK SG CYS B 70 ZN ZN B 306 1555 1555 2.55 LINK SG CYS B 73 ZN ZN B 306 1555 1555 2.34 LINK SG CYS B 85 ZN ZN B 307 1555 1555 2.44 LINK ND1 HIS B 87 ZN ZN B 307 1555 1555 2.33 LINK SG CYS B 90 ZN ZN B 306 1555 1555 2.46 LINK SG CYS B 93 ZN ZN B 306 1555 1555 2.43 LINK SG CYS B 105 ZN ZN B 307 1555 1555 2.43 LINK OD2 ASP B 108 ZN ZN B 307 1555 1555 2.36 LINK SG CYS B 134 ZN ZN B 308 1555 1555 2.47 LINK SG CYS B 139 ZN ZN B 308 1555 1555 2.45 LINK NE2 HIS B 151 ZN ZN B 308 1555 1555 2.20 LINK SG CYS B 155 ZN ZN B 308 1555 1555 2.45 LINK SG CYS B 162 ZN ZN B 309 1555 1555 2.37 LINK SG CYS B 165 ZN ZN B 309 1555 1555 2.42 LINK NE2 HIS B 177 ZN ZN B 309 1555 1555 2.33 LINK SG CYS B 182 ZN ZN B 309 1555 1555 2.44 LINK SG CYS B 189 ZN ZN B 310 1555 1555 2.50 LINK SG CYS B 192 ZN ZN B 310 1555 1555 2.38 CISPEP 1 ASP A 61 PRO A 62 0 0.19 CISPEP 2 ASP B 61 PRO B 62 0 0.17 CISPEP 3 CYS B 208 PRO B 209 0 0.49 SITE 1 AC1 4 CYS A 70 CYS A 73 CYS A 90 CYS A 93 SITE 1 AC2 5 CYS A 85 HIS A 87 CYS A 105 VAL A 107 SITE 2 AC2 5 ASP A 108 SITE 1 AC3 4 CYS A 134 CYS A 139 HIS A 151 CYS A 155 SITE 1 AC4 4 CYS A 162 CYS A 165 HIS A 177 CYS A 182 SITE 1 AC5 4 CYS A 189 CYS A 192 HIS A 204 CYS A 208 SITE 1 AC6 4 CYS B 70 CYS B 73 CYS B 90 CYS B 93 SITE 1 AC7 4 CYS B 85 HIS B 87 CYS B 105 ASP B 108 SITE 1 AC8 4 CYS B 134 CYS B 139 HIS B 151 CYS B 155 SITE 1 AC9 4 CYS B 162 CYS B 165 HIS B 177 CYS B 182 SITE 1 BC1 5 CYS B 189 CYS B 192 HIS B 204 CYS B 208 SITE 2 BC1 5 PRO B 209 CRYST1 123.663 80.757 50.723 90.00 91.36 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008086 0.000000 0.000192 0.00000 SCALE2 0.000000 0.012383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019720 0.00000