HEADER OXIDOREDUCTASE 07-MAY-09 3HDL TITLE CRYSTAL STRUCTURE OF HIGHLY GLYCOSYLATED PEROXIDASE FROM ROYAL PALM TITLE 2 TREE CAVEAT 3HDL MAN C 3 HAS WRONG CHIRALITY AT ATOM C1 NAG F 2 HAS WRONG CAVEAT 2 3HDL CHIRALITY AT ATOM C1 MAN G 5 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 3HDL NAG A 1200 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROYAL PALM TREE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROYSTONEA REGIA; SOURCE 3 ORGANISM_TAXID: 145709 KEYWDS PEROXIDASE, PALM TREE, GLYCOSYLATED, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WATANABE,P.R.MOURA,L.BLEICHER,A.S.NASCIMENTO,L.S.ZAMORANO, AUTHOR 2 J.J.CALVETE,S.BURSAKOV,M.G.ROIG,V.L.SHNYROV,I.POLIKARPOV REVDAT 5 30-OCT-24 3HDL 1 HETSYN REVDAT 4 29-JUL-20 3HDL 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 3HDL 1 VERSN REVDAT 2 23-FEB-10 3HDL 1 JRNL REVDAT 1 24-NOV-09 3HDL 0 JRNL AUTH L.WATANABE,P.R.DE MOURA,L.BLEICHER,A.S.NASCIMENTO, JRNL AUTH 2 L.S.ZAMORANO,J.J.CALVETE,L.SANZ,A.PEREZ,S.BURSAKOV,M.G.ROIG, JRNL AUTH 3 V.L.SHNYROV,I.POLIKARPOV JRNL TITL CRYSTAL STRUCTURE AND STATISTICAL COUPLING ANALYSIS OF JRNL TITL 2 HIGHLY GLYCOSYLATED PEROXIDASE FROM ROYAL PALM TREE JRNL TITL 3 (ROYSTONEA REGIA). JRNL REF J.STRUCT.BIOL. V. 169 226 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 19854274 JRNL DOI 10.1016/J.JSB.2009.10.009 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7921 - 5.2596 0.98 2765 125 0.1954 0.2133 REMARK 3 2 5.2596 - 4.1757 1.00 2695 142 0.1519 0.1462 REMARK 3 3 4.1757 - 3.6481 1.00 2702 142 0.1349 0.1325 REMARK 3 4 3.6481 - 3.3147 1.00 2659 153 0.1552 0.1710 REMARK 3 5 3.3147 - 3.0772 1.00 2625 150 0.1638 0.1769 REMARK 3 6 3.0772 - 2.8958 1.00 2661 143 0.1805 0.1800 REMARK 3 7 2.8958 - 2.7508 1.00 2658 135 0.1802 0.1959 REMARK 3 8 2.7508 - 2.6310 1.00 2639 142 0.1707 0.1758 REMARK 3 9 2.6310 - 2.5298 1.00 2657 130 0.1646 0.1869 REMARK 3 10 2.5298 - 2.4425 1.00 2610 155 0.1685 0.1577 REMARK 3 11 2.4425 - 2.3661 1.00 2647 132 0.1634 0.2087 REMARK 3 12 2.3661 - 2.2985 1.00 2644 137 0.1687 0.1792 REMARK 3 13 2.2985 - 2.2380 1.00 2630 131 0.1672 0.2207 REMARK 3 14 2.2380 - 2.1834 1.00 2598 128 0.1696 0.1915 REMARK 3 15 2.1834 - 2.1337 1.00 2676 129 0.1664 0.2080 REMARK 3 16 2.1337 - 2.0883 1.00 2570 161 0.1668 0.1762 REMARK 3 17 2.0883 - 2.0466 1.00 2623 153 0.1703 0.1946 REMARK 3 18 2.0466 - 2.0079 1.00 2590 148 0.1723 0.1997 REMARK 3 19 2.0079 - 1.9721 1.00 2636 140 0.1902 0.1877 REMARK 3 20 1.9721 - 1.9386 1.00 2628 126 0.2033 0.2523 REMARK 3 21 1.9386 - 1.9074 1.00 2602 138 0.2138 0.2472 REMARK 3 22 1.9074 - 1.8780 1.00 2602 148 0.2201 0.2127 REMARK 3 23 1.8780 - 1.8500 0.99 2613 153 0.2373 0.2361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 66.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : 18.969 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:54) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8574 53.6736 18.3251 REMARK 3 T TENSOR REMARK 3 T11: 0.2408 T22: 0.3231 REMARK 3 T33: 0.2317 T12: 0.0456 REMARK 3 T13: -0.0015 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.5280 L22: 0.6843 REMARK 3 L33: 0.6484 L12: 0.2582 REMARK 3 L13: 0.8540 L23: -0.2015 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: 0.0299 S13: 0.0411 REMARK 3 S21: 0.0668 S22: 0.1148 S23: -0.1140 REMARK 3 S31: -0.0459 S32: 0.1743 S33: -0.0289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 55:60) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7957 71.8486 7.1326 REMARK 3 T TENSOR REMARK 3 T11: 0.4398 T22: 0.3392 REMARK 3 T33: 0.4070 T12: -0.0793 REMARK 3 T13: -0.0856 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.2033 L22: -0.4010 REMARK 3 L33: 0.8352 L12: -0.0664 REMARK 3 L13: -0.4348 L23: 0.1317 REMARK 3 S TENSOR REMARK 3 S11: -0.3535 S12: 0.2183 S13: 0.1364 REMARK 3 S21: -0.1248 S22: 0.0666 S23: 0.1560 REMARK 3 S31: -0.5757 S32: 0.1095 S33: 0.1318 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 61:91) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8788 62.4589 15.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.2858 T22: 0.2937 REMARK 3 T33: 0.2634 T12: -0.0096 REMARK 3 T13: -0.0259 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.6250 L22: 0.0103 REMARK 3 L33: 0.7320 L12: 0.0756 REMARK 3 L13: 0.4145 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.2051 S12: -0.0031 S13: 0.2218 REMARK 3 S21: 0.0416 S22: 0.1444 S23: 0.0035 REMARK 3 S31: -0.1988 S32: 0.1231 S33: 0.0363 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 92:97) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4591 61.8968 19.7687 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.3769 REMARK 3 T33: 0.3768 T12: -0.0078 REMARK 3 T13: -0.0188 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: -0.2452 L22: 0.0400 REMARK 3 L33: 0.0709 L12: 0.0570 REMARK 3 L13: -0.0297 L23: 0.0473 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0745 S13: 0.7409 REMARK 3 S21: -0.2307 S22: -0.1821 S23: 0.2031 REMARK 3 S31: -0.0144 S32: 0.1469 S33: 0.1026 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 98:151) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2155 50.9033 9.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.3122 REMARK 3 T33: 0.2273 T12: 0.0163 REMARK 3 T13: 0.0116 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.2940 L22: 0.4354 REMARK 3 L33: 0.0637 L12: 0.2292 REMARK 3 L13: 0.2811 L23: 0.2276 REMARK 3 S TENSOR REMARK 3 S11: -0.1021 S12: 0.1249 S13: -0.0756 REMARK 3 S21: -0.0584 S22: 0.1045 S23: -0.1022 REMARK 3 S31: 0.1060 S32: 0.2006 S33: -0.0049 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 152:156) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6301 45.7302 -0.1345 REMARK 3 T TENSOR REMARK 3 T11: 0.3195 T22: 0.3972 REMARK 3 T33: 0.3006 T12: -0.0130 REMARK 3 T13: 0.0800 T23: -0.1084 REMARK 3 L TENSOR REMARK 3 L11: 1.1595 L22: 2.0725 REMARK 3 L33: 0.8700 L12: -0.5778 REMARK 3 L13: 0.6395 L23: -0.5488 REMARK 3 S TENSOR REMARK 3 S11: 0.1903 S12: 0.2318 S13: -0.1880 REMARK 3 S21: -0.2019 S22: -0.0598 S23: -0.1188 REMARK 3 S31: 0.1227 S32: 0.3315 S33: -0.0744 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 157:253) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0937 45.4235 8.6431 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.2296 REMARK 3 T33: 0.2357 T12: 0.0000 REMARK 3 T13: 0.0091 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.1884 L22: 0.5936 REMARK 3 L33: 0.3883 L12: 0.7295 REMARK 3 L13: -0.1484 L23: 0.1696 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: 0.1329 S13: -0.0770 REMARK 3 S21: -0.1280 S22: 0.1197 S23: 0.0521 REMARK 3 S31: 0.0012 S32: 0.0007 S33: -0.0445 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 254:259) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9248 32.1213 0.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.4067 T22: 0.2778 REMARK 3 T33: 0.4248 T12: 0.0291 REMARK 3 T13: 0.0118 T23: -0.1973 REMARK 3 L TENSOR REMARK 3 L11: 0.2913 L22: -0.2378 REMARK 3 L33: 0.5824 L12: 0.0386 REMARK 3 L13: 0.1389 L23: -0.0610 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: 0.1523 S13: -0.6766 REMARK 3 S21: -0.0103 S22: 0.1759 S23: -0.2508 REMARK 3 S31: 0.1861 S32: 0.2003 S33: 0.0197 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 260:283) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0148 35.5916 13.2072 REMARK 3 T TENSOR REMARK 3 T11: 0.2801 T22: 0.2641 REMARK 3 T33: 0.3773 T12: 0.0724 REMARK 3 T13: 0.0126 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 1.6518 L22: 0.1294 REMARK 3 L33: 1.5090 L12: -1.0533 REMARK 3 L13: 0.6406 L23: -0.5856 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.0495 S13: -0.6534 REMARK 3 S21: -0.0831 S22: 0.1098 S23: -0.0491 REMARK 3 S31: 0.3332 S32: 0.2087 S33: -0.0911 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 284:304) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0252 61.2855 10.7078 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.3880 REMARK 3 T33: 0.3251 T12: -0.0599 REMARK 3 T13: -0.0103 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.1785 L22: 0.2364 REMARK 3 L33: 0.2110 L12: 0.0398 REMARK 3 L13: 0.3132 L23: -0.1247 REMARK 3 S TENSOR REMARK 3 S11: -0.2159 S12: 0.3058 S13: 0.0398 REMARK 3 S21: -0.0311 S22: 0.1070 S23: -0.1454 REMARK 3 S31: -0.1107 S32: 0.3256 S33: 0.1260 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.42 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64039 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 44.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 AND 2.6 M AMMONIUM REMARK 280 SULFATE , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.14900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.29800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.29800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.14900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 304 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 553 O HOH A 573 1.80 REMARK 500 O HOH A 409 O HOH A 411 1.80 REMARK 500 O HOH A 510 O HOH A 522 1.81 REMARK 500 O HOH A 544 O HOH A 565 1.82 REMARK 500 O HOH A 427 O HOH A 531 1.83 REMARK 500 O HOH A 325 O HOH A 889 1.85 REMARK 500 O HOH A 489 O HOH A 937 1.86 REMARK 500 O HOH A 560 O HOH A 806 1.87 REMARK 500 O2 MAN G 3 O5 MAN G 4 1.88 REMARK 500 O HOH A 395 O HOH A 399 1.88 REMARK 500 O3 MAN B 3 O5 MAN B 5 1.89 REMARK 500 OG1 THR A 116 O HOH A 367 1.90 REMARK 500 O2 MAN C 3 O5 MAN C 4 1.91 REMARK 500 O HOH A 369 O HOH A 418 1.92 REMARK 500 O HOH A 469 O HOH A 471 1.92 REMARK 500 O HOH A 356 O HOH A 507 1.93 REMARK 500 O HOH A 354 O HOH A 565 1.94 REMARK 500 O HOH A 547 O HOH A 557 1.96 REMARK 500 O HOH A 507 O HOH A 523 1.96 REMARK 500 O HOH A 483 O HOH A 557 1.98 REMARK 500 O HOH A 420 O HOH A 584 2.00 REMARK 500 O1 EDO A 335 O HOH A 923 2.01 REMARK 500 O HOH A 389 O HOH A 565 2.04 REMARK 500 O HOH A 384 O HOH A 847 2.04 REMARK 500 O HOH A 410 O HOH A 412 2.05 REMARK 500 O HOH A 383 O HOH A 768 2.05 REMARK 500 O HOH A 759 O HOH A 869 2.08 REMARK 500 O4 NAG G 2 C2 MAN G 3 2.08 REMARK 500 O6 MAN B 3 C2 XYZ B 6 2.08 REMARK 500 O HOH A 493 O HOH A 750 2.10 REMARK 500 O HOH A 607 O HOH A 924 2.11 REMARK 500 O HOH A 430 O HOH A 517 2.12 REMARK 500 O HOH A 729 O HOH A 798 2.12 REMARK 500 O HOH A 434 O HOH A 575 2.12 REMARK 500 O HOH A 511 O HOH A 522 2.14 REMARK 500 O ASN A 187 O HOH A 545 2.15 REMARK 500 O HOH A 386 O HOH A 860 2.15 REMARK 500 O HOH A 428 O HOH A 551 2.15 REMARK 500 OD1 ASN A 154 O HOH A 548 2.15 REMARK 500 O HOH A 441 O HOH A 888 2.15 REMARK 500 O3 MAN G 3 C2 MAN G 5 2.15 REMARK 500 O4 NAG D 1 O5 NAG D 3 2.15 REMARK 500 O HOH A 426 O HOH A 535 2.16 REMARK 500 O HOH A 478 O HOH A 570 2.18 REMARK 500 O HOH A 439 O HOH A 568 2.18 REMARK 500 O HOH A 408 O HOH A 934 2.19 REMARK 500 O HOH A 536 O HOH A 876 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 575 O HOH A 580 3564 1.71 REMARK 500 O HOH A 518 O HOH A 582 6555 1.81 REMARK 500 O HOH A 913 O HOH A 915 2665 1.89 REMARK 500 O HOH A 488 O HOH A 492 3564 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 78.35 -159.20 REMARK 500 ASP A 231 -166.90 -126.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 O REMARK 620 2 ASP A 43 OD1 78.8 REMARK 620 3 VAL A 46 O 83.0 161.8 REMARK 620 4 GLY A 48 O 70.7 88.9 86.4 REMARK 620 5 ASP A 50 OD1 141.0 83.8 111.7 74.4 REMARK 620 6 SER A 52 OG 142.0 103.1 90.3 146.4 75.9 REMARK 620 7 HOH A 594 O 71.5 88.6 84.4 141.9 142.9 70.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 169 NE2 REMARK 620 2 HEM A 305 NA 89.2 REMARK 620 3 HEM A 305 NB 91.5 88.6 REMARK 620 4 HEM A 305 NC 88.6 177.4 90.3 REMARK 620 5 HEM A 305 ND 90.9 91.1 177.6 90.1 REMARK 620 6 PEO A 309 O1 174.5 87.3 84.3 94.9 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 170 O REMARK 620 2 SER A 170 OG 75.7 REMARK 620 3 ASP A 223 OD2 93.0 90.6 REMARK 620 4 THR A 226 O 82.7 158.4 90.0 REMARK 620 5 THR A 226 OG1 152.3 131.8 84.4 69.8 REMARK 620 6 VAL A 229 O 80.4 87.2 173.4 89.7 101.7 REMARK 620 7 ASP A 231 OD1 137.4 66.9 106.7 133.1 68.8 78.2 REMARK 620 N 1 2 3 4 5 6 DBREF 3HDL A 1 304 PDB 3HDL 3HDL 1 304 SEQRES 1 A 304 ASP LEU GLN ILE GLY PHE TYR ASN THR SER CYS PRO THR SEQRES 2 A 304 ALA GLU SER LEU VAL GLN GLN ALA VAL ALA ALA ALA PHE SEQRES 3 A 304 ALA ASN ASN SER GLY ILE ALA PRO GLY LEU ILE ARG MET SEQRES 4 A 304 HIS PHE HIS ASP CYS PHE VAL ARG GLY CYS ASP ALA SER SEQRES 5 A 304 VAL LEU LEU ASP SER THR ALA ASN ASN THR ALA GLU LYS SEQRES 6 A 304 ASP ALA ILE PRO ASN ASN PRO SER LEU ARG GLY PHE GLU SEQRES 7 A 304 VAL ILE THR ALA ALA LYS SER ALA VAL GLU ALA ALA CYS SEQRES 8 A 304 PRO GLN THR VAL SER CYS ALA ASP ILE LEU ALA PHE ALA SEQRES 9 A 304 ALA ARG ASP SER ALA ASN LEU ALA GLY ASN ILE THR TYR SEQRES 10 A 304 GLN VAL PRO SER GLY ARG ARG ASP GLY THR VAL SER LEU SEQRES 11 A 304 ALA SER GLU ALA ASN ALA GLN ILE PRO SER PRO LEU PHE SEQRES 12 A 304 ASN ALA THR GLN LEU ILE ASN SER PHE ALA ASN LYS THR SEQRES 13 A 304 LEU THR ALA ASP GLU MET VAL THR LEU SER GLY ALA HIS SEQRES 14 A 304 SER ILE GLY VAL ALA HIS CYS SER SER PHE THR ASN ARG SEQRES 15 A 304 LEU TYR ASN PHE ASN SER GLY SER GLY ILE ASP PRO THR SEQRES 16 A 304 LEU SER PRO SER TYR ALA ALA LEU LEU ARG ASN THR CYS SEQRES 17 A 304 PRO ALA ASN SER THR ARG PHE THR PRO ILE THR VAL SER SEQRES 18 A 304 LEU ASP ILE ILE THR PRO SER VAL LEU ASP ASN MET TYR SEQRES 19 A 304 TYR THR GLY VAL GLN LEU THR LEU GLY LEU LEU THR SER SEQRES 20 A 304 ASP GLN ALA LEU VAL THR GLU ALA ASN LEU SER ALA ALA SEQRES 21 A 304 VAL LYS ALA ASN ALA MET ASN LEU THR ALA TRP ALA SER SEQRES 22 A 304 LYS PHE ALA GLN ALA MET VAL LYS MET GLY GLN ILE GLU SEQRES 23 A 304 VAL LEU THR GLY THR GLN GLY GLU ILE ARG THR ASN CYS SEQRES 24 A 304 SER VAL VAL ASN SER MODRES 3HDL ASN A 8 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 28 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 114 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 144 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 154 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 211 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 256 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 267 ASN GLYCOSYLATION SITE MODRES 3HDL ASN A 298 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET XYZ B 6 9 HET FUC B 7 10 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET MAN C 4 11 HET FUC C 5 10 HET NAG D 1 14 HET FUC D 2 10 HET NAG D 3 14 HET NAG E 1 14 HET FUC E 2 10 HET NAG E 3 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET MAN G 3 11 HET MAN G 4 11 HET MAN G 5 11 HET FUC G 6 10 HET HEM A 305 43 HET CA A 306 1 HET CA A 307 1 HET PEO A 309 2 HET SO4 A 311 5 HET SO4 A 312 5 HET SO4 A 313 5 HET SO4 A 314 5 HET SO4 A 315 5 HET SO4 A 316 5 HET SO4 A 317 5 HET SO4 A 318 5 HET MES A 319 12 HET EDO A 320 4 HET EDO A 321 4 HET EDO A 322 4 HET EDO A 323 4 HET EDO A 324 4 HET EDO A 326 4 HET EDO A 327 4 HET EDO A 328 4 HET EDO A 329 4 HET EDO A 330 4 HET EDO A 331 4 HET EDO A 332 4 HET EDO A 333 4 HET EDO A 334 4 HET EDO A 335 4 HET EDO A 336 4 HET NAG A 700 14 HET NAG A1100 14 HET NAG A1200 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM XYZ BETA-D-XYLOFURANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM PEO HYDROGEN PEROXIDE HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYZ BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 15(C8 H15 N O6) FORMUL 2 MAN 8(C6 H12 O6) FORMUL 2 XYZ C5 H10 O5 FORMUL 2 FUC 5(C6 H12 O5) FORMUL 8 HEM C34 H32 FE N4 O4 FORMUL 9 CA 2(CA 2+) FORMUL 11 PEO H2 O2 FORMUL 12 SO4 8(O4 S 2-) FORMUL 20 MES C6 H13 N O4 S FORMUL 21 EDO 16(C2 H6 O2) FORMUL 40 HOH *586(H2 O) HELIX 1 1 THR A 13 ASN A 29 1 17 HELIX 2 2 GLY A 31 PHE A 45 1 15 HELIX 3 3 ALA A 51 LEU A 55 5 5 HELIX 4 4 ALA A 63 ALA A 67 5 5 HELIX 5 5 GLY A 76 CYS A 91 1 16 HELIX 6 6 SER A 96 ASN A 114 1 19 HELIX 7 7 LEU A 130 ILE A 138 1 9 HELIX 8 8 ASN A 144 ASN A 154 1 11 HELIX 9 9 THR A 158 SER A 166 1 9 HELIX 10 10 GLY A 167 ILE A 171 5 5 HELIX 11 11 SER A 177 LEU A 183 5 7 HELIX 12 12 SER A 197 CYS A 208 1 12 HELIX 13 13 ASN A 232 LEU A 240 1 9 HELIX 14 14 LEU A 245 ALA A 250 1 6 HELIX 15 15 LEU A 251 THR A 253 5 3 HELIX 16 16 GLU A 254 ASN A 267 1 14 HELIX 17 17 ASN A 267 GLY A 283 1 17 SHEET 1 A 2 GLN A 3 ILE A 4 0 SHEET 2 A 2 PRO A 120 SER A 121 -1 O SER A 121 N GLN A 3 SHEET 1 B 2 VAL A 173 HIS A 175 0 SHEET 2 B 2 THR A 219 SER A 221 -1 O VAL A 220 N ALA A 174 SSBOND 1 CYS A 11 CYS A 91 1555 1555 2.03 SSBOND 2 CYS A 44 CYS A 49 1555 1555 2.05 SSBOND 3 CYS A 97 CYS A 299 1555 1555 2.04 SSBOND 4 CYS A 176 CYS A 208 1555 1555 2.04 LINK ND2 ASN A 8 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 28 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 114 C1 NAG A1100 1555 1555 1.45 LINK ND2 ASN A 144 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 154 C1 NAG A 700 1555 1555 1.45 LINK ND2 ASN A 211 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 256 C1 NAG A1200 1555 1555 1.45 LINK ND2 ASN A 267 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN A 298 C1 NAG G 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O3 NAG B 1 C1 FUC B 7 1555 1555 1.44 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.44 LINK O2 MAN B 3 C1 MAN B 4 1555 1555 1.44 LINK O3 MAN B 3 C1 MAN B 5 1555 1555 1.44 LINK O6 MAN B 3 C1 XYZ B 6 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O3 NAG C 1 C1 FUC C 5 1555 1555 1.44 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.44 LINK O2 MAN C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 NAG D 1 C1 FUC D 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 3 1555 1555 1.44 LINK O3 NAG E 1 C1 FUC E 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 3 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O3 NAG G 1 C1 FUC G 6 1555 1555 1.44 LINK O4 NAG G 2 C1 MAN G 3 1555 1555 1.44 LINK O2 MAN G 3 C1 MAN G 4 1555 1555 1.44 LINK O3 MAN G 3 C1 MAN G 5 1555 1555 1.44 LINK O ASP A 43 CA CA A 307 1555 1555 2.48 LINK OD1 ASP A 43 CA CA A 307 1555 1555 2.46 LINK O VAL A 46 CA CA A 307 1555 1555 2.35 LINK O GLY A 48 CA CA A 307 1555 1555 2.51 LINK OD1 ASP A 50 CA CA A 307 1555 1555 2.50 LINK OG SER A 52 CA CA A 307 1555 1555 2.55 LINK NE2 HIS A 169 FE HEM A 305 1555 1555 2.17 LINK O SER A 170 CA CA A 306 1555 1555 2.45 LINK OG SER A 170 CA CA A 306 1555 1555 2.52 LINK OD2 ASP A 223 CA CA A 306 1555 1555 2.35 LINK O THR A 226 CA CA A 306 1555 1555 2.41 LINK OG1 THR A 226 CA CA A 306 1555 1555 2.54 LINK O VAL A 229 CA CA A 306 1555 1555 2.44 LINK OD1 ASP A 231 CA CA A 306 1555 1555 2.63 LINK FE HEM A 305 O1 PEO A 309 1555 1555 2.08 LINK CA CA A 307 O HOH A 594 1555 1555 2.59 CISPEP 1 ASN A 71 PRO A 72 0 3.45 CRYST1 117.821 117.821 93.447 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008487 0.004900 0.000000 0.00000 SCALE2 0.000000 0.009800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010701 0.00000