HEADER POLYSACCHARIDE BINDING PROTEIN 07-MAY-09 3HDX TITLE CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (NP_809182.1) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD SUPERFAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUSD HOMOLOG; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_0269, NP_809182.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_809182.1, SUSD SUPERFAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, CARBOHYDRATE METABOLISM, POLYSACCHARIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3HDX 1 REMARK SEQADV REVDAT 4 24-JUL-19 3HDX 1 REMARK LINK REVDAT 3 25-OCT-17 3HDX 1 REMARK REVDAT 2 24-NOV-09 3HDX 1 TITLE REVDAT 1 19-MAY-09 3HDX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (NP_809182.1) JRNL TITL 2 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.50 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 287 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4110 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2849 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5614 ; 1.537 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6941 ; 1.328 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 4.066 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;32.279 ;24.009 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 721 ;10.436 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;13.036 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4662 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 909 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2408 ; 1.811 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 973 ; 0.872 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3931 ; 2.530 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1702 ; 2.183 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1637 ; 3.065 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6959 ; 1.339 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 603 ; 7.382 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6838 ; 2.989 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ETHYLNE GLYCOL (EDO) MOLECULES FROM THE REMARK 3 CRYOPROTECTION SOLUTION ARE MODELED. 4. THERE IS SOME UNMODELED REMARK 3 DENSITY NEAR RESIDUE THR 188. REMARK 4 REMARK 4 3HDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97932,0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79386 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.235 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 5.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.81400 REMARK 200 R SYM FOR SHELL (I) : 0.81400 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MGACETATE, 20.0000% PEG-3350, REMARK 280 NO BUFFER PH 7.7, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 150.94950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.11050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.11050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.47475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.11050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.11050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 226.42425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.11050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.11050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.47475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.11050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.11050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 226.42425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 150.94950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 897 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 36 REMARK 465 SER A 37 REMARK 465 GLU A 38 REMARK 465 HIS A 299 REMARK 465 ASN A 300 REMARK 465 ASP A 301 REMARK 465 ASN A 302 REMARK 465 GLU A 303 REMARK 465 ALA A 304 REMARK 465 THR A 305 REMARK 465 GLN A 306 REMARK 465 SER A 307 REMARK 465 ASP A 377 REMARK 465 GLY A 378 REMARK 465 SER A 379 REMARK 465 ALA A 380 REMARK 465 LYS A 381 REMARK 465 ASP A 382 REMARK 465 ASN A 383 REMARK 465 ASP A 384 REMARK 465 PHE A 385 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 84 CE NZ REMARK 470 ARG A 134 NE CZ NH1 NH2 REMARK 470 LYS A 142 NZ REMARK 470 LYS A 353 CE NZ REMARK 470 GLU A 365 CD OE1 OE2 REMARK 470 GLN A 376 CG CD OE1 NE2 REMARK 470 LYS A 476 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 84 -25.10 -146.89 REMARK 500 GLU A 95 68.45 -101.02 REMARK 500 LYS A 226 -55.27 -123.22 REMARK 500 ASP A 350 74.04 -111.35 REMARK 500 THR A 351 -62.51 69.07 REMARK 500 LYS A 373 59.40 -153.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396191 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT (RESIDUES 36-512) WAS EXPRESSED WITH A REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HDX A 36 512 UNP Q8AB42 Q8AB42_BACTN 36 512 SEQADV 3HDX GLY A 0 UNP Q8AB42 EXPRESSION TAG SEQRES 1 A 478 GLY ALA SER GLU THR GLN GLN TRP LYS THR LEU GLU ASP SEQRES 2 A 478 THR ARG SER ALA LEU MSE GLY VAL TYR GLY LEU THR ARG SEQRES 3 A 478 ALA ALA LEU ALA ASP ASN ASN THR HIS TRP ILE CYS GLY SEQRES 4 A 478 ASP LEU ARG LYS GLY ASP PHE THR VAL TYR LYS ARG SER SEQRES 5 A 478 ASP LEU GLN ALA VAL SER ASP ASN GLU LEU ASN LYS PRO SEQRES 6 A 478 TYR ASP LEU LEU LYS LYS VAL SER ASN TRP ARG ARG PHE SEQRES 7 A 478 TYR ALA VAL ILE ASN ALA ALA SER VAL PHE MSE GLU LYS SEQRES 8 A 478 ALA PRO ARG THR VAL GLU LEU ASP ARG SER TYR SER GLU SEQRES 9 A 478 GLN ASN LEU LYS TYR ASP ILE ALA GLN VAL ARG ALA LEU SEQRES 10 A 478 ARG ALA PHE ALA TYR PHE TYR MSE VAL ARG ILE TRP GLY SEQRES 11 A 478 ASP VAL PRO LEU VAL THR TYR SER TYR ASP ASN GLY THR SEQRES 12 A 478 PHE PRO SER MSE PRO ARG THR ASP ALA GLN THR VAL LEU SEQRES 13 A 478 SER TYR ALA LYS ALA GLU LEU LEU THR ALA ILE GLU ASP SEQRES 14 A 478 LEU PRO TYR GLN TYR GLY THR GLN THR ASN LEU TYR TYR SEQRES 15 A 478 GLY SER TYR GLY ALA GLN TRP GLN GLY LYS LEU PHE ASN SEQRES 16 A 478 LYS LEU SER ALA TYR SER VAL LEU ALA HIS ILE CYS ALA SEQRES 17 A 478 TRP GLN GLY ASN TYR ALA GLU ALA GLU THR TYR SER ALA SEQRES 18 A 478 PHE ILE ILE ASP HIS ALA SER GLU ILE ASN ALA LYS TYR SEQRES 19 A 478 THR SER ILE ALA ASP LEU THR SER GLU THR GLY LEU PHE SEQRES 20 A 478 TYR SER ASN ALA SER VAL LYS GLY SER ARG ILE LEU GLY SEQRES 21 A 478 PHE ASN PHE ALA HIS ASN ASP ASN GLU ALA THR GLN SER SEQRES 22 A 478 GLY HIS LEU GLU GLN LEU THR LEU ALA TYR PRO LEU VAL SEQRES 23 A 478 GLN LYS SER TYR PRO GLU ILE TYR ILE SER LYS ASP SER SEQRES 24 A 478 LEU PHE SER ILE PHE THR ASN PHE ASP ASP LEU ARG PHE SEQRES 25 A 478 GLY ILE ILE ASP THR ILE LYS TYR SER SER TYR TYR VAL SEQRES 26 A 478 GLN ASN LEU ASN GLU GLU THR PRO VAL PHE SER LYS ILE SEQRES 27 A 478 LYS ILE ILE GLN ASP GLY SER ALA LYS ASP ASN ASP PHE SEQRES 28 A 478 GLY VAL PHE GLY SER SER ILE VAL PHE THR ARG LEU GLU SEQRES 29 A 478 ASP ILE THR LEU LEU ARG ALA GLU ALA LEU CYS ALA LEU SEQRES 30 A 478 ASN ARG SER THR GLU ALA VAL SER TYR LEU ASN MSE ILE SEQRES 31 A 478 ARG THR ASN ARG GLY LEU ARG GLU VAL SER PHE LYS LYS SEQRES 32 A 478 ASP PHE GLY ASN ASN ARG GLU SER LEU ILE ALA GLU ILE SEQRES 33 A 478 PHE GLU GLU ARG ARG ARG GLU LEU MSE GLY GLU GLY TRP SEQRES 34 A 478 ARG TRP TYR ASP LEU VAL ARG ARG GLN LYS LEU MSE LYS SEQRES 35 A 478 ASP ASN GLU ALA PHE LEU ARG LEU ILE SER SER GLY GLY SEQRES 36 A 478 ILE TYR TRP PRO VAL SER GLU ASP ILE ILE THR ALA ASN SEQRES 37 A 478 SER GLN ILE GLU GLN ASN GLU PHE TRP LYS MODRES 3HDX MSE A 53 MET SELENOMETHIONINE MODRES 3HDX MSE A 123 MET SELENOMETHIONINE MODRES 3HDX MSE A 159 MET SELENOMETHIONINE MODRES 3HDX MSE A 181 MET SELENOMETHIONINE MODRES 3HDX MSE A 423 MET SELENOMETHIONINE MODRES 3HDX MSE A 459 MET SELENOMETHIONINE MODRES 3HDX MSE A 475 MET SELENOMETHIONINE HET MSE A 53 8 HET MSE A 123 8 HET MSE A 159 13 HET MSE A 181 8 HET MSE A 423 8 HET MSE A 459 8 HET MSE A 475 8 HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 8 HET EDO A 610 4 HET EDO A 611 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 EDO 11(C2 H6 O2) FORMUL 13 HOH *595(H2 O) HELIX 1 1 THR A 44 ASP A 65 1 22 HELIX 2 2 ASN A 67 ASP A 74 1 8 HELIX 3 3 ARG A 85 ASP A 93 1 9 HELIX 4 4 TYR A 100 ASN A 108 1 9 HELIX 5 5 TRP A 109 ALA A 126 1 18 HELIX 6 6 ALA A 126 ASP A 133 1 8 HELIX 7 7 SER A 137 GLY A 164 1 28 HELIX 8 8 ASP A 185 LEU A 204 1 20 HELIX 9 9 TYR A 219 GLN A 224 5 6 HELIX 10 10 ASN A 229 GLN A 244 1 16 HELIX 11 11 ASN A 246 ALA A 261 1 16 HELIX 12 12 SER A 262 ASN A 265 5 4 HELIX 13 13 SER A 270 SER A 276 1 7 HELIX 14 14 VAL A 287 ARG A 291 5 5 HELIX 15 15 HIS A 309 LEU A 315 1 7 HELIX 16 16 SER A 330 PHE A 338 1 9 HELIX 17 17 ARG A 396 LEU A 411 1 16 HELIX 18 18 ARG A 413 THR A 426 1 14 HELIX 19 19 SER A 434 GLY A 440 1 7 HELIX 20 20 ASN A 442 LEU A 458 1 17 HELIX 21 21 TRP A 463 LYS A 476 1 14 HELIX 22 22 ASN A 478 SER A 487 1 10 HELIX 23 23 SER A 495 ASN A 502 1 8 HELIX 24 24 ASN A 508 LYS A 512 5 5 SHEET 1 A 2 THR A 81 VAL A 82 0 SHEET 2 A 2 ILE A 327 TYR A 328 -1 O TYR A 328 N THR A 81 SHEET 1 B 2 LEU A 293 PHE A 295 0 SHEET 2 B 2 ILE A 392 THR A 395 -1 O ILE A 392 N PHE A 295 SHEET 1 C 2 VAL A 359 GLN A 360 0 SHEET 2 C 2 VAL A 368 PHE A 369 -1 O VAL A 368 N GLN A 360 LINK C LEU A 52 N MSE A 53 1555 1555 1.34 LINK C MSE A 53 N GLY A 54 1555 1555 1.34 LINK C PHE A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N GLU A 124 1555 1555 1.34 LINK C TYR A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N VAL A 160 1555 1555 1.34 LINK C SER A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N PRO A 182 1555 1555 1.34 LINK C ASN A 422 N MSE A 423 1555 1555 1.34 LINK C MSE A 423 N ILE A 424 1555 1555 1.33 LINK C LEU A 458 N MSE A 459 1555 1555 1.33 LINK C MSE A 459 N GLY A 460 1555 1555 1.33 LINK C LEU A 474 N MSE A 475 1555 1555 1.35 LINK C MSE A 475 N LYS A 476 1555 1555 1.33 CISPEP 1 TYR A 317 PRO A 318 0 4.73 SITE 1 AC1 3 SER A 218 TRP A 223 LYS A 226 SITE 1 AC2 6 TYR A 234 THR A 252 PHE A 256 HOH A 674 SITE 2 AC2 6 HOH A1126 HOH A1135 SITE 1 AC3 5 TRP A 243 LYS A 473 ILE A 490 TYR A 491 SITE 2 AC3 5 HOH A 964 SITE 1 AC4 6 GLU A 452 ARG A 455 ARG A 464 ARG A 471 SITE 2 AC4 6 HOH A 842 HOH A1144 SITE 1 AC5 8 GLN A 41 TRP A 42 LYS A 43 ASP A 259 SITE 2 AC5 8 HIS A 260 HOH A 805 HOH A 930 HOH A1134 SITE 1 AC6 7 ASP A 93 ASN A 340 ARG A 425 EDO A 610 SITE 2 AC6 7 HOH A 799 HOH A 911 HOH A1153 SITE 1 AC7 3 GLY A 78 ARG A 431 HOH A 811 SITE 1 AC8 8 GLY A 225 LYS A 226 LEU A 227 PHE A 228 SITE 2 AC8 8 ARG A 291 LEU A 293 GLY A 294 HOH A 788 SITE 1 AC9 6 MSE A 53 TYR A 56 LYS A 226 HOH A 864 SITE 2 AC9 6 HOH A1016 HOH A1123 SITE 1 BC1 6 VAL A 433 EDO A 606 HOH A 622 HOH A 695 SITE 2 BC1 6 HOH A 984 HOH A1057 SITE 1 BC2 4 GLY A 217 SER A 218 TYR A 219 GLN A 222 CRYST1 56.221 56.221 301.899 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003312 0.00000