HEADER ISOMERASE 11-MAY-09 3HF5 TITLE CRYSTAL STRUCTURE OF 4-METHYLMUCONOLACTONE METHYLISOMERASE IN COMPLEX TITLE 2 WITH 3-METHYLMUCONOLACTONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-METHYLMUCONOLACTONE METHYLISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 5.4.99.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS REINEKEI; SOURCE 3 ORGANISM_TAXID: 395598; SOURCE 4 STRAIN: MT1; SOURCE 5 GENE: MMLI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASKIBAMMLI KEYWDS FERREDOXIN, FERREDOXIN-LIKE FOLD, BETA-BARREL, ISOMERASE, 4- KEYWDS 2 METHYLMUCONOLACTONE METHYLISOMERASE, BIODEGRADATION, ORTHO-CLEAVAGE EXPDTA X-RAY DIFFRACTION AUTHOR M.MARIN,D.W.HEINZ,D.H.PIEPER,B.U.KLINK REVDAT 3 01-NOV-23 3HF5 1 REMARK SEQADV REVDAT 2 22-JAN-14 3HF5 1 JRNL VERSN REVDAT 1 29-SEP-09 3HF5 0 JRNL AUTH M.MARIN,D.W.HEINZ,D.H.PIEPER,B.U.KLINK JRNL TITL CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF JRNL TITL 2 4-METHYLMUCONOLACTONE METHYLISOMERASE JRNL REF J.BIOL.CHEM. V. 284 32709 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19801657 JRNL DOI 10.1074/JBC.M109.024604 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 96243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 370 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 546 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4379 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5984 ; 1.895 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 5.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;34.364 ;23.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 802 ;14.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3485 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2536 ; 1.209 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4177 ; 2.052 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1843 ; 2.791 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1792 ; 4.407 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10505 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : 0.68000 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3HDS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 0.1M MMT, HANGING DROP, REMARK 280 TEMPERATURE 292K, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.02500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.02500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.02500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.02500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -8 REMARK 465 PRO C -8 REMARK 465 GLN C -7 REMARK 465 PHE C -6 REMARK 465 GLU C -5 REMARK 465 LYS C -4 REMARK 465 ILE C -3 REMARK 465 PRO D -8 REMARK 465 GLN D -7 REMARK 465 PHE D -6 REMARK 465 GLU D -5 REMARK 465 LYS D -4 REMARK 465 ILE D -3 REMARK 465 GLU D -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 105 O HOH C 207 1.94 REMARK 500 OE1 GLU D 105 O HOH D 347 2.00 REMARK 500 O HOH A 328 O HOH A 485 2.00 REMARK 500 O HOH B 250 O HOH B 459 2.05 REMARK 500 OE2 GLU A 40 O HOH A 281 2.08 REMARK 500 CG GLU B 105 O HOH B 461 2.11 REMARK 500 OE2 GLU A 40 O HOH D 347 2.11 REMARK 500 O SER B 81 O HOH B 456 2.13 REMARK 500 ND1 HIS B 16 O HOH B 315 2.14 REMARK 500 OE1 GLU B 40 O HOH B 271 2.16 REMARK 500 O HOH C 130 O HOH C 334 2.17 REMARK 500 O HOH D 435 O HOH D 516 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B -7 O HOH D 157 5445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 105 CD GLU B 105 OE1 0.067 REMARK 500 SER D 81 CB SER D 81 OG -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 82 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -9.13 80.26 REMARK 500 HIS C 52 -66.60 72.30 REMARK 500 HIS D 52 -59.38 72.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 42 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3ML A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3ML B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3ML C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3ML D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HDS RELATED DB: PDB REMARK 900 THE SAME PROTEIN (MLMI) IN COMPLEX WITH A MES BUFFER MOLECULE REMARK 900 RELATED ID: 3HFK RELATED DB: PDB REMARK 900 THE SAME PROTEIN (MLMI) IN COMPLEX WITH 4-METHYLMUCONOLACTONE DBREF 3HF5 A 1 107 UNP C5MR76 C5MR76_9PSED 1 107 DBREF 3HF5 B 1 107 UNP C5MR76 C5MR76_9PSED 1 107 DBREF 3HF5 C 1 107 UNP C5MR76 C5MR76_9PSED 1 107 DBREF 3HF5 D 1 107 UNP C5MR76 C5MR76_9PSED 1 107 SEQADV 3HF5 PRO A -8 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLN A -7 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 PHE A -6 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU A -5 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 LYS A -4 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ILE A -3 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU A -2 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLY A -1 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ARG A 0 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 PRO B -8 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLN B -7 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 PHE B -6 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU B -5 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 LYS B -4 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ILE B -3 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU B -2 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLY B -1 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ARG B 0 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 PRO C -8 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLN C -7 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 PHE C -6 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU C -5 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 LYS C -4 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ILE C -3 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU C -2 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLY C -1 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ARG C 0 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 PRO D -8 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLN D -7 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 PHE D -6 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU D -5 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 LYS D -4 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ILE D -3 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLU D -2 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 GLY D -1 UNP C5MR76 EXPRESSION TAG SEQADV 3HF5 ARG D 0 UNP C5MR76 EXPRESSION TAG SEQRES 1 A 116 PRO GLN PHE GLU LYS ILE GLU GLY ARG MET ILE ARG ILE SEQRES 2 A 116 LEU TYR LEU LEU VAL LYS PRO GLU SER MET SER HIS GLU SEQRES 3 A 116 GLN PHE ARG LYS GLU CYS VAL VAL HIS PHE GLN MET SER SEQRES 4 A 116 ALA GLY MET PRO GLY LEU HIS LYS TYR GLU VAL ARG LEU SEQRES 5 A 116 VAL ALA GLY ASN PRO THR ASP THR HIS VAL PRO TYR LEU SEQRES 6 A 116 ASP VAL GLY ARG ILE ASP ALA ILE GLY GLU CYS TRP PHE SEQRES 7 A 116 ALA SER GLU GLU GLN TYR GLN VAL TYR MET GLU SER ASP SEQRES 8 A 116 ILE ARG LYS ALA TRP PHE GLU HIS GLY LYS TYR PHE ILE SEQRES 9 A 116 GLY GLN LEU LYS PRO PHE VAL THR GLU GLU LEU VAL SEQRES 1 B 116 PRO GLN PHE GLU LYS ILE GLU GLY ARG MET ILE ARG ILE SEQRES 2 B 116 LEU TYR LEU LEU VAL LYS PRO GLU SER MET SER HIS GLU SEQRES 3 B 116 GLN PHE ARG LYS GLU CYS VAL VAL HIS PHE GLN MET SER SEQRES 4 B 116 ALA GLY MET PRO GLY LEU HIS LYS TYR GLU VAL ARG LEU SEQRES 5 B 116 VAL ALA GLY ASN PRO THR ASP THR HIS VAL PRO TYR LEU SEQRES 6 B 116 ASP VAL GLY ARG ILE ASP ALA ILE GLY GLU CYS TRP PHE SEQRES 7 B 116 ALA SER GLU GLU GLN TYR GLN VAL TYR MET GLU SER ASP SEQRES 8 B 116 ILE ARG LYS ALA TRP PHE GLU HIS GLY LYS TYR PHE ILE SEQRES 9 B 116 GLY GLN LEU LYS PRO PHE VAL THR GLU GLU LEU VAL SEQRES 1 C 116 PRO GLN PHE GLU LYS ILE GLU GLY ARG MET ILE ARG ILE SEQRES 2 C 116 LEU TYR LEU LEU VAL LYS PRO GLU SER MET SER HIS GLU SEQRES 3 C 116 GLN PHE ARG LYS GLU CYS VAL VAL HIS PHE GLN MET SER SEQRES 4 C 116 ALA GLY MET PRO GLY LEU HIS LYS TYR GLU VAL ARG LEU SEQRES 5 C 116 VAL ALA GLY ASN PRO THR ASP THR HIS VAL PRO TYR LEU SEQRES 6 C 116 ASP VAL GLY ARG ILE ASP ALA ILE GLY GLU CYS TRP PHE SEQRES 7 C 116 ALA SER GLU GLU GLN TYR GLN VAL TYR MET GLU SER ASP SEQRES 8 C 116 ILE ARG LYS ALA TRP PHE GLU HIS GLY LYS TYR PHE ILE SEQRES 9 C 116 GLY GLN LEU LYS PRO PHE VAL THR GLU GLU LEU VAL SEQRES 1 D 116 PRO GLN PHE GLU LYS ILE GLU GLY ARG MET ILE ARG ILE SEQRES 2 D 116 LEU TYR LEU LEU VAL LYS PRO GLU SER MET SER HIS GLU SEQRES 3 D 116 GLN PHE ARG LYS GLU CYS VAL VAL HIS PHE GLN MET SER SEQRES 4 D 116 ALA GLY MET PRO GLY LEU HIS LYS TYR GLU VAL ARG LEU SEQRES 5 D 116 VAL ALA GLY ASN PRO THR ASP THR HIS VAL PRO TYR LEU SEQRES 6 D 116 ASP VAL GLY ARG ILE ASP ALA ILE GLY GLU CYS TRP PHE SEQRES 7 D 116 ALA SER GLU GLU GLN TYR GLN VAL TYR MET GLU SER ASP SEQRES 8 D 116 ILE ARG LYS ALA TRP PHE GLU HIS GLY LYS TYR PHE ILE SEQRES 9 D 116 GLY GLN LEU LYS PRO PHE VAL THR GLU GLU LEU VAL HET 3ML A 201 11 HET 3ML B 201 11 HET 3ML C 201 11 HET 3ML D 201 11 HETNAM 3ML [(2S)-3-METHYL-5-OXO-2,5-DIHYDROFURAN-2-YL]ACETIC ACID HETSYN 3ML 3-METHYLMUCONOLACTONE FORMUL 5 3ML 4(C7 H8 O4) FORMUL 9 HOH *546(H2 O) HELIX 1 1 GLN A -7 ARG A 0 1 8 HELIX 2 2 SER A 15 SER A 30 1 16 HELIX 3 3 SER A 71 SER A 81 1 11 HELIX 4 4 SER A 81 ILE A 95 1 15 HELIX 5 5 PRO B -8 ARG B 0 1 9 HELIX 6 6 SER B 15 ALA B 31 1 17 HELIX 7 7 SER B 71 SER B 81 1 11 HELIX 8 8 SER B 81 ILE B 95 1 15 HELIX 9 9 SER C 15 SER C 30 1 16 HELIX 10 10 SER C 71 SER C 81 1 11 HELIX 11 11 SER C 81 ILE C 95 1 15 HELIX 12 12 SER D 15 SER D 30 1 16 HELIX 13 13 SER D 71 SER D 81 1 11 HELIX 14 14 SER D 81 ILE D 95 1 15 SHEET 1 A 9 ILE A 2 VAL A 9 0 SHEET 2 A 9 ALA A 63 PHE A 69 -1 O ALA A 63 N LEU A 8 SHEET 3 A 9 LYS A 38 GLY A 46 -1 N ARG A 42 O ILE A 64 SHEET 4 A 9 GLN D 97 GLU D 105 -1 O VAL D 102 N ALA A 45 SHEET 5 A 9 ILE D 2 VAL D 9 -1 N LEU D 5 O PHE D 101 SHEET 6 A 9 ALA D 63 PHE D 69 -1 O GLY D 65 N TYR D 6 SHEET 7 A 9 LYS D 38 GLY D 46 -1 N ARG D 42 O ILE D 64 SHEET 8 A 9 GLN A 97 GLU A 105 -1 N VAL A 102 O ALA D 45 SHEET 9 A 9 ILE A 2 VAL A 9 -1 N LEU A 5 O PHE A 101 SHEET 1 B 9 ILE B 2 VAL B 9 0 SHEET 2 B 9 ALA B 63 PHE B 69 -1 O GLY B 65 N TYR B 6 SHEET 3 B 9 LYS B 38 GLY B 46 -1 N ARG B 42 O ILE B 64 SHEET 4 B 9 GLN C 97 GLU C 105 -1 O VAL C 102 N ALA B 45 SHEET 5 B 9 ILE C 2 VAL C 9 -1 N LEU C 5 O PHE C 101 SHEET 6 B 9 ALA C 63 PHE C 69 -1 O GLY C 65 N TYR C 6 SHEET 7 B 9 LYS C 38 GLY C 46 -1 N ARG C 42 O ILE C 64 SHEET 8 B 9 GLN B 97 GLU B 104 -1 N VAL B 102 O ALA C 45 SHEET 9 B 9 ILE B 2 VAL B 9 -1 N LEU B 5 O PHE B 101 SITE 1 AC1 6 TYR A 6 HIS A 26 TYR A 39 TYR A 78 SITE 2 AC1 6 PHE A 88 GLY A 91 SITE 1 AC2 9 TYR B 6 HIS B 26 TYR B 39 TYR B 78 SITE 2 AC2 9 PHE B 88 GLY B 91 ILE B 95 HOH B 514 SITE 3 AC2 9 HOH C 513 SITE 1 AC3 7 HIS B 52 TYR C 6 HIS C 26 TYR C 39 SITE 2 AC3 7 TYR C 78 PHE C 88 GLY C 91 SITE 1 AC4 7 HIS A 52 TYR D 6 HIS D 26 TYR D 39 SITE 2 AC4 7 TYR D 78 PHE D 88 GLY D 91 CRYST1 81.760 84.000 150.050 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006664 0.00000