HEADER ISOMERASE 12-MAY-09 3HFR TITLE CRYSTAL STRUCTURE OF GLUTAMATE RACEMASE FROM LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 STRAIN: LISTERIA MONOCYTOGENES EGD-E; SOURCE 5 GENE: LMO1237, MURI, RACE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 STAR MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19C KEYWDS GLUTAMATE RACEMASE, STRUCTURAL GENOMICS, SAD, CELL SHAPE, CELL WALL KEYWDS 2 BIOGENESIS/DEGRADATION, ISOMERASE, PEPTIDOGLYCAN SYNTHESIS, CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR K.A.MAJOREK,M.CHRUSZCZ,M.D.ZIMMERMAN,M.M.KLIMECKA,M.CYMBOROWSKI, AUTHOR 2 T.SKARINA,O.ONOPRIYENKO,J.STAM,Z.OTWINOWSKI,W.F.ANDERSON, AUTHOR 3 A.SAVCHENKO,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 4 DISEASES (CSGID) REVDAT 5 06-NOV-24 3HFR 1 REMARK REVDAT 4 13-APR-22 3HFR 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 03-OCT-18 3HFR 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL ATOM REVDAT 2 13-JUL-11 3HFR 1 VERSN REVDAT 1 09-JUN-09 3HFR 0 JRNL AUTH K.A.MAJOREK,M.CHRUSZCZ,M.D.ZIMMERMAN,M.M.KLIMECKA, JRNL AUTH 2 M.CYMBOROWSKI,T.SKARINA,O.ONOPRIYENKO,J.STAM,Z.OTWINOWSKI, JRNL AUTH 3 W.F.ANDERSON,A.SAVCHENKO,W.MINOR, JRNL AUTH 4 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 5 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF GLUTAMATE RACEMASE FROM LISTERIA JRNL TITL 2 MONOCYTOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1822 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.330 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4211 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2830 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5703 ; 1.222 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6976 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 5.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;41.178 ;24.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 745 ;13.818 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.527 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 674 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4605 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 783 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2661 ; 0.381 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1087 ; 0.101 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4313 ; 0.716 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 1.269 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1387 ; 2.033 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3309 ; 0.87 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 3309 ; 0.51 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9330 27.7680 58.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1335 REMARK 3 T33: 0.1735 T12: 0.0145 REMARK 3 T13: 0.0035 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 3.5159 L22: 2.2376 REMARK 3 L33: 3.1286 L12: -0.8705 REMARK 3 L13: -0.6775 L23: 0.1840 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0818 S13: 0.3753 REMARK 3 S21: -0.1337 S22: 0.0598 S23: -0.3593 REMARK 3 S31: -0.1279 S32: -0.0320 S33: -0.0658 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4300 13.9550 68.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1766 REMARK 3 T33: 0.1905 T12: 0.0230 REMARK 3 T13: -0.0187 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 1.8434 L22: 2.0679 REMARK 3 L33: 2.6293 L12: -0.5849 REMARK 3 L13: 0.4523 L23: 0.1203 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.0633 S13: -0.3050 REMARK 3 S21: 0.1067 S22: 0.1961 S23: -0.1124 REMARK 3 S31: 0.2736 S32: -0.0180 S33: -0.2211 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 234 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3240 21.2680 47.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.2942 REMARK 3 T33: 0.1572 T12: 0.0225 REMARK 3 T13: -0.0589 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 3.1156 L22: 7.9175 REMARK 3 L33: 10.3087 L12: 0.7140 REMARK 3 L13: -1.2665 L23: -2.7517 REMARK 3 S TENSOR REMARK 3 S11: 0.0812 S12: 0.1661 S13: -0.0002 REMARK 3 S21: -0.6054 S22: 0.1153 S23: 0.4013 REMARK 3 S31: 0.2000 S32: -0.6502 S33: -0.1965 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3410 37.2460 91.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.2969 REMARK 3 T33: 0.1396 T12: 0.0542 REMARK 3 T13: -0.0633 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 2.5999 L22: 5.8798 REMARK 3 L33: 7.3098 L12: -0.3517 REMARK 3 L13: -1.5900 L23: 1.7313 REMARK 3 S TENSOR REMARK 3 S11: 0.1478 S12: -0.0776 S13: 0.3280 REMARK 3 S21: 0.0695 S22: 0.0712 S23: -0.0506 REMARK 3 S31: -0.6776 S32: -0.3508 S33: -0.2190 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2090 44.0270 82.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.5666 T22: 0.5174 REMARK 3 T33: 0.9058 T12: 0.2322 REMARK 3 T13: 0.1612 T23: 0.2489 REMARK 3 L TENSOR REMARK 3 L11: 1.7859 L22: 1.8223 REMARK 3 L33: 13.4444 L12: -1.4474 REMARK 3 L13: 4.4918 L23: -4.7339 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: -0.2247 S13: 0.3847 REMARK 3 S21: 0.0691 S22: 0.4368 S23: 0.3855 REMARK 3 S31: -0.6252 S32: -1.2367 S33: -0.3361 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 91 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7040 27.7530 87.4910 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.2232 REMARK 3 T33: 0.1276 T12: 0.0478 REMARK 3 T13: -0.0265 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.8300 L22: 1.1539 REMARK 3 L33: 3.9471 L12: 0.4624 REMARK 3 L13: -0.3047 L23: 0.2162 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: -0.1397 S13: -0.0008 REMARK 3 S21: 0.1268 S22: 0.0285 S23: -0.0100 REMARK 3 S31: 0.1293 S32: -0.3811 S33: -0.0806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60600 REMARK 200 R SYM FOR SHELL (I) : 0.60600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 SOLVE/RESOLVE, SHELXD, MLPHARE, DM, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JEFFAMINE ED-2001 PH 7.0, 0.1M HEPES REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.99500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.32550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.32550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 193.49250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.32550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.32550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.49750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.32550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.32550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 193.49250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.32550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.32550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.49750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 128.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 LYS A 266 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 159 CD1 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 ARG B 135 NE CZ NH1 NH2 REMARK 470 LYS B 175 CE NZ REMARK 470 GLU B 229 CD OE1 OE2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 45.83 -88.54 REMARK 500 ALA A 79 -4.60 -146.82 REMARK 500 ASP A 256 54.68 -101.91 REMARK 500 ALA B 79 15.36 -159.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE AVERAGE WEIGHT OF JEFFAMINE IS 2000 REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 JEF A 269 REMARK 610 JEF A 270 REMARK 610 JEF B 268 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6JZ A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6JZ A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6JZ B 268 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00347 RELATED DB: TARGETDB DBREF 3HFR A 1 266 UNP Q8Y7N7 MURI_LISMO 1 266 DBREF 3HFR B 1 266 UNP Q8Y7N7 MURI_LISMO 1 266 SEQADV 3HFR SER A -2 UNP Q8Y7N7 EXPRESSION TAG SEQADV 3HFR ASN A -1 UNP Q8Y7N7 EXPRESSION TAG SEQADV 3HFR ALA A 0 UNP Q8Y7N7 EXPRESSION TAG SEQADV 3HFR SER B -2 UNP Q8Y7N7 EXPRESSION TAG SEQADV 3HFR ASN B -1 UNP Q8Y7N7 EXPRESSION TAG SEQADV 3HFR ALA B 0 UNP Q8Y7N7 EXPRESSION TAG SEQRES 1 A 269 SER ASN ALA MSE LYS GLN ALA ILE GLY PHE ILE ASP SER SEQRES 2 A 269 GLY VAL GLY GLY LEU THR VAL VAL ARG GLU VAL LEU LYS SEQRES 3 A 269 GLN LEU PRO HIS GLU GLN VAL TYR TYR LEU GLY ASP THR SEQRES 4 A 269 ALA ARG CYS PRO TYR GLY PRO ARG ASP LYS GLU GLU VAL SEQRES 5 A 269 ALA LYS PHE THR TRP GLU MSE THR ASN PHE LEU VAL ASP SEQRES 6 A 269 ARG GLY ILE LYS MSE LEU VAL ILE ALA CYS ASN THR ALA SEQRES 7 A 269 THR ALA ALA ALA LEU TYR ASP ILE ARG GLU LYS LEU ASP SEQRES 8 A 269 ILE PRO VAL ILE GLY VAL ILE GLN PRO GLY SER ARG ALA SEQRES 9 A 269 ALA LEU LYS ALA THR ARG ASN ASN LYS ILE GLY VAL LEU SEQRES 10 A 269 GLY THR LEU GLY THR VAL GLU SER MSE ALA TYR PRO THR SEQRES 11 A 269 ALA LEU LYS GLY LEU ASN ARG ARG VAL GLU VAL ASP SER SEQRES 12 A 269 LEU ALA CYS PRO LYS PHE VAL SER VAL VAL GLU SER GLY SEQRES 13 A 269 GLU TYR LYS SER ALA ILE ALA LYS LYS VAL VAL ALA GLU SEQRES 14 A 269 SER LEU LEU PRO LEU LYS SER THR LYS ILE ASP THR VAL SEQRES 15 A 269 ILE LEU GLY CYS THR HIS TYR PRO LEU LEU LYS PRO ILE SEQRES 16 A 269 ILE GLU ASN PHE MSE GLY ASP GLY VAL ALA VAL ILE ASN SEQRES 17 A 269 SER GLY GLU GLU THR ALA SER GLU VAL SER ALA LEU LEU SEQRES 18 A 269 ASP TYR HIS ASN LEU LEU ASP ALA THR ASP GLU GLU ILE SEQRES 19 A 269 GLU HIS ARG PHE PHE THR THR GLY SER THR GLN ILE PHE SEQRES 20 A 269 LYS ASP ILE ALA LYS ASP TRP LEU ASN MSE PRO ASP MSE SEQRES 21 A 269 THR VAL GLU HIS ILE LYS LEU GLY LYS SEQRES 1 B 269 SER ASN ALA MSE LYS GLN ALA ILE GLY PHE ILE ASP SER SEQRES 2 B 269 GLY VAL GLY GLY LEU THR VAL VAL ARG GLU VAL LEU LYS SEQRES 3 B 269 GLN LEU PRO HIS GLU GLN VAL TYR TYR LEU GLY ASP THR SEQRES 4 B 269 ALA ARG CYS PRO TYR GLY PRO ARG ASP LYS GLU GLU VAL SEQRES 5 B 269 ALA LYS PHE THR TRP GLU MSE THR ASN PHE LEU VAL ASP SEQRES 6 B 269 ARG GLY ILE LYS MSE LEU VAL ILE ALA CYS ASN THR ALA SEQRES 7 B 269 THR ALA ALA ALA LEU TYR ASP ILE ARG GLU LYS LEU ASP SEQRES 8 B 269 ILE PRO VAL ILE GLY VAL ILE GLN PRO GLY SER ARG ALA SEQRES 9 B 269 ALA LEU LYS ALA THR ARG ASN ASN LYS ILE GLY VAL LEU SEQRES 10 B 269 GLY THR LEU GLY THR VAL GLU SER MSE ALA TYR PRO THR SEQRES 11 B 269 ALA LEU LYS GLY LEU ASN ARG ARG VAL GLU VAL ASP SER SEQRES 12 B 269 LEU ALA CYS PRO LYS PHE VAL SER VAL VAL GLU SER GLY SEQRES 13 B 269 GLU TYR LYS SER ALA ILE ALA LYS LYS VAL VAL ALA GLU SEQRES 14 B 269 SER LEU LEU PRO LEU LYS SER THR LYS ILE ASP THR VAL SEQRES 15 B 269 ILE LEU GLY CYS THR HIS TYR PRO LEU LEU LYS PRO ILE SEQRES 16 B 269 ILE GLU ASN PHE MSE GLY ASP GLY VAL ALA VAL ILE ASN SEQRES 17 B 269 SER GLY GLU GLU THR ALA SER GLU VAL SER ALA LEU LEU SEQRES 18 B 269 ASP TYR HIS ASN LEU LEU ASP ALA THR ASP GLU GLU ILE SEQRES 19 B 269 GLU HIS ARG PHE PHE THR THR GLY SER THR GLN ILE PHE SEQRES 20 B 269 LYS ASP ILE ALA LYS ASP TRP LEU ASN MSE PRO ASP MSE SEQRES 21 B 269 THR VAL GLU HIS ILE LYS LEU GLY LYS MODRES 3HFR MSE A 1 MET SELENOMETHIONINE MODRES 3HFR MSE A 56 MET SELENOMETHIONINE MODRES 3HFR MSE A 67 MET SELENOMETHIONINE MODRES 3HFR MSE A 123 MET SELENOMETHIONINE MODRES 3HFR MSE A 197 MET SELENOMETHIONINE MODRES 3HFR MSE A 254 MET SELENOMETHIONINE MODRES 3HFR MSE A 257 MET SELENOMETHIONINE MODRES 3HFR MSE B 1 MET SELENOMETHIONINE MODRES 3HFR MSE B 56 MET SELENOMETHIONINE MODRES 3HFR MSE B 67 MET SELENOMETHIONINE MODRES 3HFR MSE B 123 MET SELENOMETHIONINE MODRES 3HFR MSE B 197 MET SELENOMETHIONINE MODRES 3HFR MSE B 254 MET SELENOMETHIONINE MODRES 3HFR MSE B 257 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 56 16 HET MSE A 67 8 HET MSE A 123 16 HET MSE A 197 8 HET MSE A 254 8 HET MSE A 257 8 HET MSE B 1 8 HET MSE B 56 8 HET MSE B 67 8 HET MSE B 123 8 HET MSE B 197 8 HET MSE B 254 8 HET MSE B 257 8 HET CL A 267 1 HET CL A 268 1 HET JEF A 269 9 HET JEF A 270 8 HET CL B 267 1 HET JEF B 268 17 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM JEF O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE HETNAM 2 JEF GLYCOL 500) HETSYN JEF JEFFAMINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 5 JEF 3(C30 H63 N O10) FORMUL 9 HOH *240(H2 O) HELIX 1 1 GLY A 14 LEU A 25 1 12 HELIX 2 2 THR A 36 CYS A 39 5 4 HELIX 3 3 ASP A 45 GLY A 64 1 20 HELIX 4 4 CYS A 72 LEU A 87 1 16 HELIX 5 5 VAL A 94 THR A 106 1 13 HELIX 6 6 THR A 116 MSE A 123 1 8 HELIX 7 7 MSE A 123 ASN A 133 1 11 HELIX 8 8 LYS A 145 SER A 152 1 8 HELIX 9 9 SER A 157 LEU A 169 1 13 HELIX 10 10 PRO A 170 THR A 174 5 5 HELIX 11 11 HIS A 185 LEU A 188 5 4 HELIX 12 12 LEU A 189 GLY A 198 1 10 HELIX 13 13 SER A 206 HIS A 221 1 16 HELIX 14 14 SER A 240 LEU A 252 1 13 HELIX 15 15 GLY B 14 LEU B 25 1 12 HELIX 16 16 THR B 36 CYS B 39 5 4 HELIX 17 17 ASP B 45 ARG B 63 1 19 HELIX 18 18 CYS B 72 LEU B 87 1 16 HELIX 19 19 VAL B 94 THR B 106 1 13 HELIX 20 20 THR B 116 MSE B 123 1 8 HELIX 21 21 MSE B 123 ASN B 133 1 11 HELIX 22 22 LYS B 145 SER B 152 1 8 HELIX 23 23 GLY B 153 LYS B 156 5 4 HELIX 24 24 SER B 157 LEU B 168 1 12 HELIX 25 25 LEU B 169 THR B 174 5 6 HELIX 26 26 HIS B 185 LEU B 188 5 4 HELIX 27 27 LEU B 189 GLY B 198 1 10 HELIX 28 28 SER B 206 HIS B 221 1 16 HELIX 29 29 SER B 240 LEU B 252 1 13 SHEET 1 A 6 VAL A 91 GLY A 93 0 SHEET 2 A 6 ILE A 65 ILE A 70 1 N ILE A 70 O ILE A 92 SHEET 3 A 6 ALA A 4 ASP A 9 1 N GLY A 6 O MSE A 67 SHEET 4 A 6 VAL A 30 GLY A 34 1 O TYR A 31 N ILE A 5 SHEET 5 A 6 ARG A 234 THR A 237 1 O ARG A 234 N TYR A 32 SHEET 6 A 6 VAL A 259 HIS A 261 1 O GLU A 260 N PHE A 235 SHEET 1 B 4 GLU A 137 ALA A 142 0 SHEET 2 B 4 LYS A 110 GLY A 115 1 N VAL A 113 O LEU A 141 SHEET 3 B 4 THR A 178 LEU A 181 1 O THR A 178 N GLY A 112 SHEET 4 B 4 ALA A 202 ASN A 205 1 O ILE A 204 N VAL A 179 SHEET 1 C 6 VAL B 91 GLY B 93 0 SHEET 2 C 6 ILE B 65 ILE B 70 1 N ILE B 70 O ILE B 92 SHEET 3 C 6 ALA B 4 ASP B 9 1 N GLY B 6 O MSE B 67 SHEET 4 C 6 VAL B 30 GLY B 34 1 O TYR B 31 N ILE B 5 SHEET 5 C 6 ARG B 234 THR B 237 1 O PHE B 236 N TYR B 32 SHEET 6 C 6 VAL B 259 HIS B 261 1 O GLU B 260 N PHE B 235 SHEET 1 D 4 GLU B 137 ALA B 142 0 SHEET 2 D 4 LYS B 110 GLY B 115 1 N ILE B 111 O GLU B 137 SHEET 3 D 4 THR B 178 LEU B 181 1 O ILE B 180 N GLY B 112 SHEET 4 D 4 ALA B 202 ASN B 205 1 O ILE B 204 N VAL B 179 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.34 LINK C GLU A 55 N AMSE A 56 1555 1555 1.33 LINK C GLU A 55 N BMSE A 56 1555 1555 1.33 LINK C AMSE A 56 N THR A 57 1555 1555 1.33 LINK C BMSE A 56 N THR A 57 1555 1555 1.33 LINK C LYS A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N LEU A 68 1555 1555 1.33 LINK C SER A 122 N AMSE A 123 1555 1555 1.34 LINK C SER A 122 N BMSE A 123 1555 1555 1.33 LINK C AMSE A 123 N ALA A 124 1555 1555 1.34 LINK C BMSE A 123 N ALA A 124 1555 1555 1.33 LINK C PHE A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N GLY A 198 1555 1555 1.33 LINK C ASN A 253 N MSE A 254 1555 1555 1.34 LINK C MSE A 254 N PRO A 255 1555 1555 1.35 LINK C ASP A 256 N MSE A 257 1555 1555 1.32 LINK C MSE A 257 N THR A 258 1555 1555 1.34 LINK C MSE B 1 N LYS B 2 1555 1555 1.34 LINK C GLU B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N THR B 57 1555 1555 1.33 LINK C LYS B 66 N MSE B 67 1555 1555 1.33 LINK C MSE B 67 N LEU B 68 1555 1555 1.33 LINK C SER B 122 N MSE B 123 1555 1555 1.33 LINK C MSE B 123 N ALA B 124 1555 1555 1.33 LINK C PHE B 196 N MSE B 197 1555 1555 1.33 LINK C MSE B 197 N GLY B 198 1555 1555 1.33 LINK C ASN B 253 N MSE B 254 1555 1555 1.32 LINK C MSE B 254 N PRO B 255 1555 1555 1.34 LINK C ASP B 256 N MSE B 257 1555 1555 1.33 LINK C MSE B 257 N THR B 258 1555 1555 1.33 CISPEP 1 CYS A 39 PRO A 40 0 8.94 CISPEP 2 CYS B 39 PRO B 40 0 -4.82 SITE 1 AC1 4 THR A 74 THR A 116 THR A 119 HOH A 272 SITE 1 AC2 2 THR A 116 LEU A 117 SITE 1 AC3 2 TYR A 81 ASN B 222 SITE 1 AC4 2 LYS A 156 ASP A 246 SITE 1 AC5 4 ASN B 73 CYS B 183 THR B 184 HOH B 333 SITE 1 AC6 5 TYR A 220 HIS A 221 ASP B 88 TYR B 220 SITE 2 AC6 5 HIS B 221 CRYST1 66.651 66.651 257.990 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003876 0.00000