HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-MAY-09 3HG9 TITLE CRYSTAL STRUCTURE OF PUTATIVE PILM PROTEIN FROM PSEUDOMONAS AERUGINOSA TITLE 2 2192 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: 2192; SOURCE 5 GENE: PILM, CP42; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, PILM PROTEIN, KEYWDS 3 UNKNOWN FUNCTION, PSI-2, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 3HG9 1 REMARK REVDAT 6 10-FEB-21 3HG9 1 AUTHOR JRNL REMARK LINK REVDAT 5 21-NOV-18 3HG9 1 AUTHOR REVDAT 4 01-NOV-17 3HG9 1 REMARK REVDAT 3 24-OCT-12 3HG9 1 AUTHOR REVDAT 2 13-JUL-11 3HG9 1 VERSN REVDAT 1 26-MAY-09 3HG9 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PILM PROTEIN FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA 2192 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 12250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.6730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.26000 REMARK 3 B22 (A**2) : 11.26000 REMARK 3 B33 (A**2) : -22.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.433 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1791 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2446 ; 2.450 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ;10.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;37.630 ;21.343 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 252 ;24.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.091 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1380 ; 0.013 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 1.026 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1882 ; 1.865 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 604 ; 2.625 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 564 ; 4.221 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.503 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K, K, -L REMARK 3 TWIN FRACTION : 0.497 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 127 REMARK 3 RESIDUE RANGE : A 501 A 502 REMARK 3 RESIDUE RANGE : A 132 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0616 21.5670 -17.7616 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.0858 REMARK 3 T33: 0.0137 T12: 0.0140 REMARK 3 T13: 0.0092 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.3657 L22: 0.3008 REMARK 3 L33: 0.5131 L12: 0.1402 REMARK 3 L13: 0.5545 L23: 0.3251 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.0888 S13: 0.0337 REMARK 3 S21: -0.0560 S22: -0.0891 S23: 0.0255 REMARK 3 S31: -0.0351 S32: -0.0646 S33: 0.0312 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 127 REMARK 3 RESIDUE RANGE : B 132 B 234 REMARK 3 ORIGIN FOR THE GROUP (A): -34.3177 15.5869 -30.0353 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0879 REMARK 3 T33: 0.0155 T12: 0.0392 REMARK 3 T13: -0.0128 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.5914 L22: 1.0338 REMARK 3 L33: 0.9833 L12: -0.4953 REMARK 3 L13: -0.3124 L23: 0.7826 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.0949 S13: 0.0023 REMARK 3 S21: -0.1575 S22: -0.0844 S23: 0.0500 REMARK 3 S31: -0.0930 S32: -0.0027 S33: 0.0983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3HG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.5430 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 2.0 M AMMONIUM REMARK 280 SULFATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.42267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.71133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.42267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.71133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 206 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 ALA B 7 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 94 O HOH B 225 1.90 REMARK 500 NZ LYS A 123 O HOH A 134 2.00 REMARK 500 O GLY A 125 O HOH A 209 2.11 REMARK 500 OG SER B 87 O HOH B 136 2.15 REMARK 500 NH1 ARG B 93 OD1 ASN B 95 2.15 REMARK 500 O GLY A 64 O HOH A 158 2.16 REMARK 500 O ARG A 101 O HOH A 143 2.17 REMARK 500 CG1 VAL B 55 O HOH B 146 2.18 REMARK 500 O ALA A 79 OG1 THR A 83 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 184 O HOH B 226 3455 1.95 REMARK 500 O VAL B 55 O HOH B 153 4455 2.13 REMARK 500 O HOH A 201 O HOH B 207 3565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 40 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 PRO A 40 C - N - CD ANGL. DEV. = -17.9 DEGREES REMARK 500 PRO A 48 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 VAL A 120 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 HIS A 126 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO B 74 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 PRO B 74 C - N - CD ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 99.25 -162.92 REMARK 500 SER A 39 49.13 -149.59 REMARK 500 PRO A 40 -34.34 -0.08 REMARK 500 ALA A 41 166.45 114.57 REMARK 500 ALA A 44 -36.82 89.66 REMARK 500 PRO A 48 -47.84 -16.79 REMARK 500 ALA A 49 -46.58 110.78 REMARK 500 PRO A 54 94.24 -55.23 REMARK 500 VAL A 55 126.82 -31.24 REMARK 500 ARG A 56 -20.34 116.01 REMARK 500 ALA A 63 -35.18 49.82 REMARK 500 THR A 65 100.54 132.41 REMARK 500 GLU A 86 -84.45 -92.97 REMARK 500 SER A 87 136.83 122.02 REMARK 500 ASP A 88 117.30 -160.60 REMARK 500 ARG A 94 102.57 -169.97 REMARK 500 ARG A 102 -8.26 65.50 REMARK 500 ALA A 109 88.74 -62.17 REMARK 500 PRO A 111 154.18 -32.08 REMARK 500 HIS A 126 -95.61 30.39 REMARK 500 VAL B 12 -9.28 -42.51 REMARK 500 HIS B 31 -76.84 -52.28 REMARK 500 ALA B 32 59.16 -58.79 REMARK 500 ASN B 33 59.56 156.56 REMARK 500 ASP B 42 -2.92 -57.83 REMARK 500 ALA B 44 -158.65 -60.08 REMARK 500 LEU B 45 -51.11 57.99 REMARK 500 ALA B 63 -174.00 53.48 REMARK 500 GLU B 86 -93.81 109.33 REMARK 500 SER B 87 145.82 120.36 REMARK 500 ARG B 101 55.65 -59.62 REMARK 500 ARG B 102 -23.05 -153.65 REMARK 500 ALA B 109 87.27 -51.26 REMARK 500 HIS B 126 16.77 33.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 11 VAL A 12 149.29 REMARK 500 VAL B 55 ARG B 56 33.38 REMARK 500 ARG B 94 ASN B 95 -134.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10170D RELATED DB: TARGETDB DBREF 3HG9 A 4 123 UNP Q6X3P5 Q6X3P5_PSEAE 26 145 DBREF 3HG9 B 4 123 UNP Q6X3P5 Q6X3P5_PSEAE 26 145 SEQADV 3HG9 MET A 1 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 SER A 2 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 LEU A 3 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 GLU A 124 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 GLY A 125 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS A 126 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS A 127 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS A 128 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS A 129 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS A 130 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS A 131 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 MET B 1 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 SER B 2 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 LEU B 3 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 GLU B 124 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 GLY B 125 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS B 126 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS B 127 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS B 128 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS B 129 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS B 130 UNP Q6X3P5 EXPRESSION TAG SEQADV 3HG9 HIS B 131 UNP Q6X3P5 EXPRESSION TAG SEQRES 1 A 131 MET SER LEU THR SER SER ALA GLU LEU ALA GLU VAL ASP SEQRES 2 A 131 THR LEU ALA ARG SER LEU LEU LEU TYR ARG SER ARG LEU SEQRES 3 A 131 ALA GLU TYR ALA HIS ALA ASN PRO GLY PHE SER GLY SER SEQRES 4 A 131 PRO ALA ASP SER ALA LEU GLY LEU PRO ALA TRP PHE ARG SEQRES 5 A 131 LYS PRO VAL ARG LEU GLN GLY TYR ILE ALA ALA GLY THR SEQRES 6 A 131 SER TYR ALA PHE ILE ALA SER PRO PRO ALA GLY LEU ALA SEQRES 7 A 131 ALA ALA VAL ASP THR GLY THR GLU SER ASP LEU VAL GLY SEQRES 8 A 131 VAL ARG ARG ASN GLY GLN LEU VAL THR ARG ARG LEU GLY SEQRES 9 A 131 ALA THR ALA ILE ALA LEU PRO ALA PRO ILE PRO GLU GLY SEQRES 10 A 131 ALA VAL VAL ALA VAL LYS GLU GLY HIS HIS HIS HIS HIS SEQRES 11 A 131 HIS SEQRES 1 B 131 MET SER LEU THR SER SER ALA GLU LEU ALA GLU VAL ASP SEQRES 2 B 131 THR LEU ALA ARG SER LEU LEU LEU TYR ARG SER ARG LEU SEQRES 3 B 131 ALA GLU TYR ALA HIS ALA ASN PRO GLY PHE SER GLY SER SEQRES 4 B 131 PRO ALA ASP SER ALA LEU GLY LEU PRO ALA TRP PHE ARG SEQRES 5 B 131 LYS PRO VAL ARG LEU GLN GLY TYR ILE ALA ALA GLY THR SEQRES 6 B 131 SER TYR ALA PHE ILE ALA SER PRO PRO ALA GLY LEU ALA SEQRES 7 B 131 ALA ALA VAL ASP THR GLY THR GLU SER ASP LEU VAL GLY SEQRES 8 B 131 VAL ARG ARG ASN GLY GLN LEU VAL THR ARG ARG LEU GLY SEQRES 9 B 131 ALA THR ALA ILE ALA LEU PRO ALA PRO ILE PRO GLU GLY SEQRES 10 B 131 ALA VAL VAL ALA VAL LYS GLU GLY HIS HIS HIS HIS HIS SEQRES 11 B 131 HIS HET NI A 501 1 HET NI A 502 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *183(H2 O) HELIX 1 1 VAL A 12 HIS A 31 1 20 HELIX 2 2 GLY A 76 THR A 85 1 10 HELIX 3 3 GLU B 11 ALA B 32 1 22 HELIX 4 4 GLY B 76 GLY B 84 1 9 SHEET 1 A 6 LEU A 57 ILE A 61 0 SHEET 2 A 6 SER A 66 ILE A 70 -1 O PHE A 69 N GLN A 58 SHEET 3 A 6 VAL B 119 LYS B 123 -1 O ALA B 121 N ALA A 68 SHEET 4 A 6 ASP B 88 ARG B 94 -1 N LEU B 89 O VAL B 122 SHEET 5 A 6 GLN B 97 VAL B 99 -1 O VAL B 99 N VAL B 92 SHEET 6 A 6 ALA B 105 THR B 106 -1 O THR B 106 N LEU B 98 SHEET 1 B 6 GLY A 104 THR A 106 0 SHEET 2 B 6 LEU A 98 THR A 100 -1 N LEU A 98 O THR A 106 SHEET 3 B 6 ASP A 88 ARG A 93 -1 N VAL A 92 O VAL A 99 SHEET 4 B 6 VAL A 119 LYS A 123 -1 O VAL A 122 N LEU A 89 SHEET 5 B 6 THR B 65 ILE B 70 -1 O SER B 66 N LYS A 123 SHEET 6 B 6 LEU B 57 ALA B 62 -1 N GLN B 58 O PHE B 69 LINK NI NI A 502 NE2 HIS B 31 1555 1555 2.74 CISPEP 1 ARG A 94 ASN A 95 0 -13.05 CISPEP 2 GLY B 38 SER B 39 0 -3.39 SITE 1 AC1 2 HIS A 31 HIS B 126 SITE 1 AC2 2 HIS A 126 HIS B 31 CRYST1 64.516 64.516 143.134 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015500 0.008949 0.000000 0.00000 SCALE2 0.000000 0.017898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006986 0.00000