HEADER TRANSCRIPTION REGULATOR 15-MAY-09 3HHF TITLE STRUCTURE OF CRGA REGULATORY DOMAIN, A LYSR-TYPE TRANSCRIPTIONAL TITLE 2 REGULATOR FROM NEISSERIA MENINGITIDIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LYSR FAMILY; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 491; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: CRGA, NMB1856; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: OPPF2152 KEYWDS NEISSERIA MENINGITIDIS, TRANSCRIPTION FACTOR, LYSR, STRUCTURAL KEYWDS 2 GENOMICS, OXFORD PROTEIN PRODUCTION FACILITY, OPPF, DNA-BINDING, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR S.SAINSBURY,J.REN,R.J.OWENS,D.I.STUART,OXFORD PROTEIN PRODUCTION AUTHOR 2 FACILITY (OPPF) REVDAT 3 13-JUL-11 3HHF 1 VERSN REVDAT 2 25-AUG-09 3HHF 1 JRNL REVDAT 1 07-JUL-09 3HHF 0 JRNL AUTH S.SAINSBURY,L.A.LANE,J.REN,R.J.GILBERT,N.J.SAUNDERS, JRNL AUTH 2 C.V.ROBINSON,D.I.STUART,R.J.OWENS JRNL TITL THE STRUCTURE OF CRGA FROM NEISSERIA MENINGITIDIS REVEALS A JRNL TITL 2 NEW OCTAMERIC ASSEMBLY STATE FOR LYSR TRANSCRIPTIONAL JRNL TITL 3 REGULATORS JRNL REF NUCLEIC ACIDS RES. V. 37 4545 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19474343 JRNL DOI 10.1093/NAR/GKP445 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 14781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 29.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.78000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : 0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.768 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.972 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3206 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2175 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4350 ; 1.000 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5301 ; 0.947 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 5.595 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;28.606 ;23.617 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;12.077 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;11.728 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3569 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 647 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 621 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2218 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1522 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1669 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.117 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2505 ; 0.680 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 822 ; 0.085 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3243 ; 0.870 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 1.532 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1107 ; 2.299 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 95 A 146 5 REMARK 3 1 B 95 B 146 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 308 ; 0.10 ; 2.00 REMARK 3 LOOSE POSITIONAL 1 A (A): 389 ; 0.58 ; 10.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 308 ; 1.65 ; 8.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 389 ; 1.90 ; 20.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 155 A 293 4 REMARK 3 1 B 155 B 293 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 1831 ; 0.38 ; 2.00 REMARK 3 MEDIUM THERMAL 2 A (A**2): 1831 ; 1.00 ; 8.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 161 REMARK 3 RESIDUE RANGE : A 267 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3987 35.4239 48.6081 REMARK 3 T TENSOR REMARK 3 T11: -0.0447 T22: -0.0314 REMARK 3 T33: -0.0653 T12: -0.0034 REMARK 3 T13: 0.0042 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.5788 L22: 2.5932 REMARK 3 L33: 2.2840 L12: 0.4182 REMARK 3 L13: 0.0752 L23: 0.1814 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.1676 S13: 0.1095 REMARK 3 S21: 0.2299 S22: -0.0598 S23: -0.1361 REMARK 3 S31: -0.0948 S32: 0.0492 S33: 0.0488 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0169 30.9308 22.1654 REMARK 3 T TENSOR REMARK 3 T11: -0.1131 T22: -0.1498 REMARK 3 T33: -0.1617 T12: 0.0014 REMARK 3 T13: 0.0236 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.8325 L22: 2.2118 REMARK 3 L33: 1.7965 L12: 0.7502 REMARK 3 L13: -0.8588 L23: 0.2341 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.0272 S13: 0.0106 REMARK 3 S21: -0.1393 S22: 0.0516 S23: -0.0783 REMARK 3 S31: 0.0572 S32: 0.1308 S33: -0.0313 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 161 REMARK 3 RESIDUE RANGE : B 267 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6251 39.5146 31.0215 REMARK 3 T TENSOR REMARK 3 T11: -0.0287 T22: -0.0658 REMARK 3 T33: -0.0166 T12: 0.0137 REMARK 3 T13: 0.0138 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.0486 L22: 1.9017 REMARK 3 L33: 2.0803 L12: -0.2243 REMARK 3 L13: -0.7369 L23: -0.7140 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0931 S13: 0.2381 REMARK 3 S21: -0.0542 S22: 0.0416 S23: 0.0618 REMARK 3 S31: -0.2514 S32: -0.1092 S33: -0.0222 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 162 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4617 23.4452 52.7737 REMARK 3 T TENSOR REMARK 3 T11: -0.0429 T22: -0.0181 REMARK 3 T33: -0.0661 T12: 0.0049 REMARK 3 T13: 0.0004 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.1528 L22: 1.7016 REMARK 3 L33: 1.7357 L12: 0.4196 REMARK 3 L13: -0.5902 L23: -0.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.1086 S13: -0.0749 REMARK 3 S21: 0.0800 S22: 0.0036 S23: 0.0047 REMARK 3 S31: 0.0833 S32: 0.0070 S33: 0.0053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB053137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-06; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : ESRF; NULL REMARK 200 BEAMLINE : BM14; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9780, 0.9065, 0.9785, 0.9795; REMARK 200 NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 34.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM ACETATE, 25% PEG 3350, REMARK 280 0.1M BIS-TRIS PH5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.80000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 87 REMARK 465 PRO B 88 REMARK 465 GLU B 89 REMARK 465 ILE B 90 REMARK 465 GLU B 148 REMARK 465 LEU B 149 REMARK 465 ASN B 295 REMARK 465 ASN B 296 REMARK 465 LEU B 297 REMARK 465 CYS B 298 REMARK 465 GLY B 299 REMARK 465 GLY A 87 REMARK 465 PRO A 88 REMARK 465 GLU A 89 REMARK 465 ILE A 90 REMARK 465 ASN A 295 REMARK 465 ASN A 296 REMARK 465 LEU A 297 REMARK 465 CYS A 298 REMARK 465 GLY A 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY B 294 O REMARK 470 GLY A 294 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 276 OD1 ASN A 279 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 152 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 206 -169.56 -78.98 REMARK 500 LEU A 107 -55.16 -122.75 REMARK 500 TYR A 132 30.88 -96.46 REMARK 500 ALA A 203 37.49 -87.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER B 152 1.7 L L EXPECTING SP3 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 602 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 605 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 5.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HHG RELATED DB: PDB REMARK 900 RELATED ID: OPTIC231 RELATED DB: TARGETDB DBREF 3HHF B 89 299 UNP Q9JXW7 Q9JXW7_NEIMB 89 299 DBREF 3HHF A 89 299 UNP Q9JXW7 Q9JXW7_NEIMB 89 299 SEQADV 3HHF GLY B 87 UNP Q9JXW7 EXPRESSION TAG SEQADV 3HHF PRO B 88 UNP Q9JXW7 EXPRESSION TAG SEQADV 3HHF GLY A 87 UNP Q9JXW7 EXPRESSION TAG SEQADV 3HHF PRO A 88 UNP Q9JXW7 EXPRESSION TAG SEQRES 1 B 213 GLY PRO GLU ILE PRO GLN GLY VAL LEU SER VAL ASP SER SEQRES 2 B 213 ALA MSE PRO MSE VAL LEU HIS LEU LEU ALA PRO LEU ALA SEQRES 3 B 213 ALA LYS PHE ASN GLU ARG TYR PRO HIS ILE ARG LEU SER SEQRES 4 B 213 LEU VAL SER SER GLU GLY TYR ILE ASN LEU ILE GLU ARG SEQRES 5 B 213 LYS VAL ASP ILE ALA LEU ARG ALA GLY GLU LEU ASP ASP SEQRES 6 B 213 SER GLY LEU ARG ALA ARG HIS LEU PHE ASP SER ARG PHE SEQRES 7 B 213 ARG VAL ILE ALA SER PRO GLU TYR LEU ALA LYS HIS GLY SEQRES 8 B 213 THR PRO GLN SER THR GLU GLU LEU ALA GLY HIS GLN CYS SEQRES 9 B 213 LEU GLY PHE THR GLU PRO GLY SER LEU ASN THR TRP ALA SEQRES 10 B 213 VAL LEU ASP ALA GLN GLY ASN PRO TYR LYS ILE SER PRO SEQRES 11 B 213 HIS PHE THR ALA SER SER GLY GLU ILE LEU ARG SER LEU SEQRES 12 B 213 CYS LEU SER GLY CYS GLY ILE VAL CYS LEU SER ASP PHE SEQRES 13 B 213 LEU VAL ASP ASN ASP ILE ALA GLU GLY LYS LEU ILE PRO SEQRES 14 B 213 LEU LEU ALA GLU GLN THR SER ASP LYS THR HIS PRO PHE SEQRES 15 B 213 ASN ALA VAL TYR TYR SER ASP LYS ALA VAL ASN LEU ARG SEQRES 16 B 213 LEU ARG VAL PHE LEU ASP PHE LEU VAL GLU GLU LEU GLY SEQRES 17 B 213 ASN ASN LEU CYS GLY SEQRES 1 A 213 GLY PRO GLU ILE PRO GLN GLY VAL LEU SER VAL ASP SER SEQRES 2 A 213 ALA MSE PRO MSE VAL LEU HIS LEU LEU ALA PRO LEU ALA SEQRES 3 A 213 ALA LYS PHE ASN GLU ARG TYR PRO HIS ILE ARG LEU SER SEQRES 4 A 213 LEU VAL SER SER GLU GLY TYR ILE ASN LEU ILE GLU ARG SEQRES 5 A 213 LYS VAL ASP ILE ALA LEU ARG ALA GLY GLU LEU ASP ASP SEQRES 6 A 213 SER GLY LEU ARG ALA ARG HIS LEU PHE ASP SER ARG PHE SEQRES 7 A 213 ARG VAL ILE ALA SER PRO GLU TYR LEU ALA LYS HIS GLY SEQRES 8 A 213 THR PRO GLN SER THR GLU GLU LEU ALA GLY HIS GLN CYS SEQRES 9 A 213 LEU GLY PHE THR GLU PRO GLY SER LEU ASN THR TRP ALA SEQRES 10 A 213 VAL LEU ASP ALA GLN GLY ASN PRO TYR LYS ILE SER PRO SEQRES 11 A 213 HIS PHE THR ALA SER SER GLY GLU ILE LEU ARG SER LEU SEQRES 12 A 213 CYS LEU SER GLY CYS GLY ILE VAL CYS LEU SER ASP PHE SEQRES 13 A 213 LEU VAL ASP ASN ASP ILE ALA GLU GLY LYS LEU ILE PRO SEQRES 14 A 213 LEU LEU ALA GLU GLN THR SER ASP LYS THR HIS PRO PHE SEQRES 15 A 213 ASN ALA VAL TYR TYR SER ASP LYS ALA VAL ASN LEU ARG SEQRES 16 A 213 LEU ARG VAL PHE LEU ASP PHE LEU VAL GLU GLU LEU GLY SEQRES 17 A 213 ASN ASN LEU CYS GLY MODRES 3HHF MSE B 101 MET SELENOMETHIONINE MODRES 3HHF MSE B 103 MET SELENOMETHIONINE MODRES 3HHF MSE A 101 MET SELENOMETHIONINE MODRES 3HHF MSE A 103 MET SELENOMETHIONINE HET MSE B 101 8 HET MSE B 103 8 HET MSE A 101 8 HET MSE A 103 8 HET CL B 2 1 HET CL A 1 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *203(H2 O) HELIX 1 1 ALA B 100 LEU B 107 1 8 HELIX 2 2 LEU B 107 TYR B 119 1 13 HELIX 3 3 TYR B 132 GLU B 137 1 6 HELIX 4 4 SER B 169 GLY B 177 1 9 HELIX 5 5 SER B 181 HIS B 188 5 8 HELIX 6 6 PRO B 196 LEU B 199 5 4 HELIX 7 7 SER B 222 SER B 232 1 11 HELIX 8 8 ASP B 241 GLU B 250 1 10 HELIX 9 9 ASP B 275 VAL B 278 5 4 HELIX 10 10 ASN B 279 GLY B 294 1 16 HELIX 11 11 ALA A 100 LEU A 107 1 8 HELIX 12 12 LEU A 107 TYR A 119 1 13 HELIX 13 13 TYR A 132 GLU A 137 1 6 HELIX 14 14 SER A 169 GLY A 177 1 9 HELIX 15 15 THR A 182 HIS A 188 5 7 HELIX 16 16 PRO A 196 LEU A 199 5 4 HELIX 17 17 SER A 222 SER A 232 1 11 HELIX 18 18 ASP A 241 GLU A 250 1 10 HELIX 19 19 TYR A 273 VAL A 278 5 6 HELIX 20 20 ASN A 279 GLY A 294 1 16 SHEET 1 A 7 LEU B 154 SER B 162 0 SHEET 2 A 7 HIS B 266 TYR B 273 -1 O TYR B 272 N ARG B 155 SHEET 3 A 7 ILE B 142 ARG B 145 -1 N ALA B 143 O VAL B 271 SHEET 4 A 7 GLY B 93 SER B 99 1 N ASP B 98 O ILE B 142 SHEET 5 A 7 ILE B 122 VAL B 127 1 O SER B 125 N VAL B 97 SHEET 6 A 7 THR A 219 ALA A 220 1 O THR A 219 N LEU B 126 SHEET 7 A 7 GLY A 192 PHE A 193 1 N GLY A 192 O ALA A 220 SHEET 1 B 3 VAL B 237 SER B 240 0 SHEET 2 B 3 PHE B 164 ALA B 168 -1 N ILE B 167 O VAL B 237 SHEET 3 B 3 ILE B 254 LEU B 256 -1 O ILE B 254 N ALA B 168 SHEET 1 C 7 GLY B 192 PHE B 193 0 SHEET 2 C 7 THR B 219 ALA B 220 1 O ALA B 220 N GLY B 192 SHEET 3 C 7 ILE A 122 SER A 128 1 O LEU A 126 N THR B 219 SHEET 4 C 7 GLY A 93 SER A 99 1 N VAL A 97 O SER A 125 SHEET 5 C 7 ILE A 142 ARG A 145 1 O ILE A 142 N ASP A 98 SHEET 6 C 7 HIS A 266 TYR A 272 -1 O VAL A 271 N ALA A 143 SHEET 7 C 7 ARG A 155 SER A 162 -1 N ARG A 155 O TYR A 272 SHEET 1 D 2 THR B 201 LEU B 205 0 SHEET 2 D 2 PRO B 211 LYS B 213 -1 O TYR B 212 N TRP B 202 SHEET 1 E 3 VAL A 237 SER A 240 0 SHEET 2 E 3 PHE A 164 ALA A 168 -1 N ILE A 167 O VAL A 237 SHEET 3 E 3 ILE A 254 LEU A 256 -1 O LEU A 256 N VAL A 166 SHEET 1 F 2 THR A 201 LEU A 205 0 SHEET 2 F 2 PRO A 211 LYS A 213 -1 O TYR A 212 N TRP A 202 LINK C ALA B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N PRO B 102 1555 1555 1.35 LINK C PRO B 102 N MSE B 103 1555 1555 1.33 LINK C MSE B 103 N VAL B 104 1555 1555 1.33 LINK C ALA A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N PRO A 102 1555 1555 1.35 LINK C PRO A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N VAL A 104 1555 1555 1.33 CISPEP 1 GLU B 195 PRO B 196 0 -2.77 CISPEP 2 GLU A 195 PRO A 196 0 -1.68 SITE 1 AC1 2 GLY B 223 HOH B 816 SITE 1 AC2 2 GLY A 223 HOH A 809 CRYST1 51.600 65.600 63.500 90.00 105.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019380 0.000000 0.005193 0.00000 SCALE2 0.000000 0.015244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016304 0.00000