HEADER TRANSFERASE 20-MAY-09 3HJ1 TITLE MINOR EDITOSOME-ASSOCIATED TUTASE 1 WITH BOUND UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR EDITOSOME-ASSOCIATED TUTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: TB927.1.1330; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TUTASE, NUCLEOTIDYLTRANSFERASE, TRYPANOSOMA, EDITOSOME, RNA EDITING, KEYWDS 2 UTP-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.STAGNO,H.LUECKE REVDAT 5 21-FEB-24 3HJ1 1 REMARK SEQADV REVDAT 4 01-NOV-17 3HJ1 1 REMARK REVDAT 3 13-JUL-11 3HJ1 1 VERSN REVDAT 2 18-AUG-10 3HJ1 1 JRNL REVDAT 1 12-MAY-10 3HJ1 0 JRNL AUTH J.STAGNO,I.APHASIZHEVA,J.BRUYSTENS,H.LUECKE,R.APHASIZHEV JRNL TITL STRUCTURE OF THE MITOCHONDRIAL EDITOSOME-LIKE COMPLEX JRNL TITL 2 ASSOCIATED TUTASE 1 REVEALS DIVERGENT MECHANISMS OF UTP JRNL TITL 3 SELECTION AND DOMAIN ORGANIZATION. JRNL REF J.MOL.BIOL. V. 399 464 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20403364 JRNL DOI 10.1016/J.JMB.2010.04.021 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 54332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 567 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.93000 REMARK 3 B22 (A**2) : -2.18000 REMARK 3 B33 (A**2) : 2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.658 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6471 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8757 ; 1.401 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 779 ; 5.334 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 335 ;34.607 ;23.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1118 ;16.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;17.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4980 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3855 ; 0.614 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6239 ; 1.222 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2616 ; 2.313 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2513 ; 3.951 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 382 1 REMARK 3 1 B 1 B 382 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3097 ; 0.080 ; 0.050 REMARK 3 TIGHT THERMAL 1 B (A**2): 3097 ; 0.130 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 382 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 RESIDUE RANGE : A 407 A 683 REMARK 3 ORIGIN FOR THE GROUP (A): 59.7341 14.2973 2.3179 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0437 REMARK 3 T33: 0.0208 T12: -0.0003 REMARK 3 T13: -0.0247 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4090 L22: 0.3148 REMARK 3 L33: 0.3043 L12: 0.0959 REMARK 3 L13: -0.2797 L23: -0.1776 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.0006 S13: 0.0227 REMARK 3 S21: 0.0162 S22: 0.0017 S23: 0.0294 REMARK 3 S31: -0.0246 S32: -0.0202 S33: -0.0195 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 385 REMARK 3 RESIDUE RANGE : B 502 B 502 REMARK 3 RESIDUE RANGE : B 407 B 698 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9407 38.8755 28.7532 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0433 REMARK 3 T33: 0.0171 T12: 0.0012 REMARK 3 T13: -0.0260 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.4272 L22: 0.2314 REMARK 3 L33: 0.2949 L12: 0.1367 REMARK 3 L13: -0.2476 L23: -0.0787 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0119 S13: -0.0212 REMARK 3 S21: 0.0114 S22: -0.0122 S23: -0.0052 REMARK 3 S31: -0.0084 S32: 0.0118 S33: 0.0110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3HJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5280 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM ACETATE, 25% PEG 3350, REMARK 280 0.5MM UTP, PH 8.0, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.99950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT RELATED BY 2-FOLD NON-CRYSTALLOGRAPHIC REMARK 300 SYMMETRY (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 383 REMARK 465 VAL A 384 REMARK 465 PRO A 385 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 382 CB ASP A 382 CG 0.130 REMARK 500 ASP A 382 CG ASP A 382 OD2 0.223 REMARK 500 ASP A 382 C ASP A 382 O -0.150 REMARK 500 ASP B 382 CB ASP B 382 CG 0.135 REMARK 500 ASP B 382 C ASP B 382 O 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 352 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 352 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 177 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 177 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 352 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 352 NE - CZ - NH2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 382 O - C - N ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 152 88.08 -161.23 REMARK 500 GLU A 171 19.21 59.89 REMARK 500 ALA A 174 78.52 -157.67 REMARK 500 THR A 179 -156.81 -98.46 REMARK 500 ASN A 338 1.63 -154.23 REMARK 500 PHE B 152 88.04 -162.73 REMARK 500 ALA B 174 79.11 -158.41 REMARK 500 THR B 179 -158.92 -106.62 REMARK 500 ASN B 338 4.47 -154.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B 382 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HIY RELATED DB: PDB REMARK 900 MINOR EDITOSOME-ASSOCIATED TUTASE 1 WITH BOUND UTP AND MG REMARK 900 RELATED ID: 3HJ4 RELATED DB: PDB REMARK 900 MINOR EDITOSOME-ASSOCIATED TUTASE 1 DBREF 3HJ1 A 1 385 UNP Q4GZ86 Q4GZ86_9TRYP 1 385 DBREF 3HJ1 B 1 385 UNP Q4GZ86 Q4GZ86_9TRYP 1 385 SEQADV 3HJ1 GLY A -1 UNP Q4GZ86 EXPRESSION TAG SEQADV 3HJ1 HIS A 0 UNP Q4GZ86 EXPRESSION TAG SEQADV 3HJ1 GLY B -1 UNP Q4GZ86 EXPRESSION TAG SEQADV 3HJ1 HIS B 0 UNP Q4GZ86 EXPRESSION TAG SEQRES 1 A 387 GLY HIS MET ASN VAL ALA LYS ARG GLU PHE ILE ARG GLY SEQRES 2 A 387 MET MET ALA HIS TYR ARG ALA SER LEU PRO PRO PRO GLU SEQRES 3 A 387 HIS SER VAL VAL ILE HIS GLU LEU GLN LYS ARG VAL LEU SEQRES 4 A 387 ASP ILE GLY MET LEU ALA VAL ASN LYS ALA HIS VAL GLU SEQRES 5 A 387 LEU PHE GLY SER HIS VAL SER GLY PHE CYS THR PRO HIS SEQRES 6 A 387 SER ASP ALA ASP ILE SER LEU THR TYR ARG ASN PHE SER SEQRES 7 A 387 PRO TRP LEU GLN GLY MET GLU ARG VAL ASP GLU GLN ASN SEQRES 8 A 387 ASN LYS ARG MET THR ARG PHE GLY LYS GLU ALA SER ALA SEQRES 9 A 387 MET GLY MET GLU ASP VAL ARG TYR ILE ARG ALA ARG ILE SEQRES 10 A 387 PRO VAL VAL GLN PHE THR ASP GLY VAL THR GLY ILE HIS SEQRES 11 A 387 CYS ASP VAL SER ILE GLY ASN ILE GLY GLY VAL GLU ASN SEQRES 12 A 387 SER LYS ILE LEU CYS ALA ILE ARG GLN VAL PHE PRO ASP SEQRES 13 A 387 PHE TYR GLY ALA TYR ILE HIS LEU VAL LYS ALA TRP GLY SEQRES 14 A 387 LYS ALA ARG GLU VAL ILE ALA PRO GLU ARG SER THR PHE SEQRES 15 A 387 ASN SER PHE THR VAL THR THR MET ALA LEU MET VAL LEU SEQRES 16 A 387 GLN GLU LEU GLY LEU LEU PRO VAL PHE SER LYS PRO THR SEQRES 17 A 387 GLY GLU PHE GLY GLU LEU THR VAL ALA ASP ALA GLU MET SEQRES 18 A 387 LEU LEU GLN GLU PHE LYS LEU PRO PRO ILE TYR ASP SER SEQRES 19 A 387 LEU HIS ASP ASP ASP GLU LYS LEU GLY GLU ALA VAL PHE SEQRES 20 A 387 PHE CYS LEU GLN ARG PHE ALA GLU TYR TYR ALA LYS TYR SEQRES 21 A 387 ASP PHE SER ALA GLY THR VAL SER LEU ILE HIS PRO ARG SEQRES 22 A 387 ARG HIS ARG THR VAL TYR GLU ARG VAL VAL ARG ARG HIS SEQRES 23 A 387 LEU GLU LEU LEU GLY SER ARG LYS ARG LEU GLU TRP GLU SEQRES 24 A 387 LYS HIS ILE ALA GLU HIS LYS GLU ASP GLY PRO LEU ASP SEQRES 25 A 387 GLU ASN ASP PHE SER ALA SER MET GLN ASN GLU THR THR SEQRES 26 A 387 GLN ARG PRO SER ASN SER PRO TYR VAL VAL GLU ASP PHE SEQRES 27 A 387 VAL ASN TYR VAL ASN CYS GLY ARG ARG VAL GLN ALA SER SEQRES 28 A 387 ARG VAL ARG HIS ILE GLN GLN GLU PHE ASN ARG LEU ARG SEQRES 29 A 387 GLU MET LEU ILE ASP LYS GLU SER GLU LEU LYS PHE ASP SEQRES 30 A 387 GLU VAL PHE ARG GLU SER ASP THR VAL PRO SEQRES 1 B 387 GLY HIS MET ASN VAL ALA LYS ARG GLU PHE ILE ARG GLY SEQRES 2 B 387 MET MET ALA HIS TYR ARG ALA SER LEU PRO PRO PRO GLU SEQRES 3 B 387 HIS SER VAL VAL ILE HIS GLU LEU GLN LYS ARG VAL LEU SEQRES 4 B 387 ASP ILE GLY MET LEU ALA VAL ASN LYS ALA HIS VAL GLU SEQRES 5 B 387 LEU PHE GLY SER HIS VAL SER GLY PHE CYS THR PRO HIS SEQRES 6 B 387 SER ASP ALA ASP ILE SER LEU THR TYR ARG ASN PHE SER SEQRES 7 B 387 PRO TRP LEU GLN GLY MET GLU ARG VAL ASP GLU GLN ASN SEQRES 8 B 387 ASN LYS ARG MET THR ARG PHE GLY LYS GLU ALA SER ALA SEQRES 9 B 387 MET GLY MET GLU ASP VAL ARG TYR ILE ARG ALA ARG ILE SEQRES 10 B 387 PRO VAL VAL GLN PHE THR ASP GLY VAL THR GLY ILE HIS SEQRES 11 B 387 CYS ASP VAL SER ILE GLY ASN ILE GLY GLY VAL GLU ASN SEQRES 12 B 387 SER LYS ILE LEU CYS ALA ILE ARG GLN VAL PHE PRO ASP SEQRES 13 B 387 PHE TYR GLY ALA TYR ILE HIS LEU VAL LYS ALA TRP GLY SEQRES 14 B 387 LYS ALA ARG GLU VAL ILE ALA PRO GLU ARG SER THR PHE SEQRES 15 B 387 ASN SER PHE THR VAL THR THR MET ALA LEU MET VAL LEU SEQRES 16 B 387 GLN GLU LEU GLY LEU LEU PRO VAL PHE SER LYS PRO THR SEQRES 17 B 387 GLY GLU PHE GLY GLU LEU THR VAL ALA ASP ALA GLU MET SEQRES 18 B 387 LEU LEU GLN GLU PHE LYS LEU PRO PRO ILE TYR ASP SER SEQRES 19 B 387 LEU HIS ASP ASP ASP GLU LYS LEU GLY GLU ALA VAL PHE SEQRES 20 B 387 PHE CYS LEU GLN ARG PHE ALA GLU TYR TYR ALA LYS TYR SEQRES 21 B 387 ASP PHE SER ALA GLY THR VAL SER LEU ILE HIS PRO ARG SEQRES 22 B 387 ARG HIS ARG THR VAL TYR GLU ARG VAL VAL ARG ARG HIS SEQRES 23 B 387 LEU GLU LEU LEU GLY SER ARG LYS ARG LEU GLU TRP GLU SEQRES 24 B 387 LYS HIS ILE ALA GLU HIS LYS GLU ASP GLY PRO LEU ASP SEQRES 25 B 387 GLU ASN ASP PHE SER ALA SER MET GLN ASN GLU THR THR SEQRES 26 B 387 GLN ARG PRO SER ASN SER PRO TYR VAL VAL GLU ASP PHE SEQRES 27 B 387 VAL ASN TYR VAL ASN CYS GLY ARG ARG VAL GLN ALA SER SEQRES 28 B 387 ARG VAL ARG HIS ILE GLN GLN GLU PHE ASN ARG LEU ARG SEQRES 29 B 387 GLU MET LEU ILE ASP LYS GLU SER GLU LEU LYS PHE ASP SEQRES 30 B 387 GLU VAL PHE ARG GLU SER ASP THR VAL PRO HET UTP A 501 29 HET UTP B 502 29 HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 3 UTP 2(C9 H15 N2 O15 P3) FORMUL 5 HOH *567(H2 O) HELIX 1 1 VAL A 3 LEU A 20 1 18 HELIX 2 2 GLU A 24 VAL A 44 1 21 HELIX 3 3 GLY A 53 GLY A 58 1 6 HELIX 4 4 SER A 76 GLN A 80 5 5 HELIX 5 5 MET A 82 GLY A 104 1 23 HELIX 6 6 ASN A 135 VAL A 151 1 17 HELIX 7 7 PHE A 152 ARG A 170 1 19 HELIX 8 8 ALA A 174 SER A 178 5 5 HELIX 9 9 ASN A 181 GLY A 197 1 17 HELIX 10 10 THR A 213 PHE A 224 1 12 HELIX 11 11 PRO A 227 LEU A 233 5 7 HELIX 12 12 ASP A 236 TYR A 258 1 23 HELIX 13 13 HIS A 273 HIS A 303 1 31 HELIX 14 14 LYS A 304 GLY A 307 5 4 HELIX 15 15 ASP A 310 GLN A 324 1 15 HELIX 16 16 GLN A 347 SER A 349 5 3 HELIX 17 17 ARG A 350 ILE A 366 1 17 HELIX 18 18 LYS A 368 LEU A 372 5 5 HELIX 19 19 LYS A 373 PHE A 378 1 6 HELIX 20 20 VAL B 3 LEU B 20 1 18 HELIX 21 21 GLU B 24 VAL B 44 1 21 HELIX 22 22 GLY B 53 GLY B 58 1 6 HELIX 23 23 MET B 82 GLY B 104 1 23 HELIX 24 24 ASN B 135 VAL B 151 1 17 HELIX 25 25 PHE B 152 ARG B 170 1 19 HELIX 26 26 ALA B 174 SER B 178 5 5 HELIX 27 27 ASN B 181 GLY B 197 1 17 HELIX 28 28 THR B 213 PHE B 224 1 12 HELIX 29 29 PRO B 227 LEU B 233 5 7 HELIX 30 30 ASP B 236 TYR B 258 1 23 HELIX 31 31 HIS B 273 HIS B 303 1 31 HELIX 32 32 LYS B 304 GLY B 307 5 4 HELIX 33 33 ASP B 310 GLN B 324 1 15 HELIX 34 34 GLN B 347 SER B 349 5 3 HELIX 35 35 ARG B 350 ASP B 367 1 18 HELIX 36 36 LYS B 368 LEU B 372 5 5 HELIX 37 37 LYS B 373 PHE B 378 1 6 SHEET 1 A 5 HIS A 48 PHE A 52 0 SHEET 2 A 5 ALA A 66 THR A 71 -1 O SER A 69 N GLU A 50 SHEET 3 A 5 HIS A 128 ILE A 133 1 O HIS A 128 N ALA A 66 SHEET 4 A 5 VAL A 117 THR A 121 -1 N PHE A 120 O CYS A 129 SHEET 5 A 5 GLU A 106 ILE A 111 -1 N GLU A 106 O THR A 121 SHEET 1 B 5 HIS B 48 PHE B 52 0 SHEET 2 B 5 ALA B 66 THR B 71 -1 O SER B 69 N GLU B 50 SHEET 3 B 5 HIS B 128 ILE B 133 1 O HIS B 128 N ALA B 66 SHEET 4 B 5 VAL B 117 THR B 121 -1 N PHE B 120 O CYS B 129 SHEET 5 B 5 GLU B 106 ILE B 111 -1 N ILE B 111 O VAL B 117 CISPEP 1 GLY A 307 PRO A 308 0 -5.14 CISPEP 2 GLY B 307 PRO B 308 0 -4.75 SITE 1 AC1 24 PHE A 52 GLY A 53 SER A 54 ASP A 65 SITE 2 AC1 24 ASP A 67 GLY A 138 ASN A 141 SER A 142 SITE 3 AC1 24 LYS A 164 LYS A 168 ASN A 181 SER A 182 SITE 4 AC1 24 PHE A 183 ASP A 335 CYS A 342 ARG A 345 SITE 5 AC1 24 HOH A 415 HOH A 423 HOH A 434 HOH A 494 SITE 6 AC1 24 HOH A 584 HOH A 645 HOH A 648 HOH A 650 SITE 1 AC2 25 PHE B 52 GLY B 53 SER B 54 ASP B 65 SITE 2 AC2 25 ASP B 67 GLY B 138 ASN B 141 SER B 142 SITE 3 AC2 25 LYS B 164 LYS B 168 ASN B 181 SER B 182 SITE 4 AC2 25 PHE B 183 ASP B 335 CYS B 342 ARG B 345 SITE 5 AC2 25 HOH B 447 HOH B 462 HOH B 479 HOH B 480 SITE 6 AC2 25 HOH B 549 HOH B 605 HOH B 614 HOH B 629 SITE 7 AC2 25 HOH B 645 CRYST1 62.873 101.999 66.124 90.00 111.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015905 0.000000 0.006312 0.00000 SCALE2 0.000000 0.009804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016270 0.00000