HEADER TRANSFERASE 21-MAY-09 3HJ6 TITLE STRUCTURE OF HALOTHERMOTHRIX ORENII FRUCTOKINASE (FRK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FRK; COMPND 5 EC: 2.7.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOTHERMOTHRIX ORENII; SOURCE 3 ORGANISM_TAXID: 373903; SOURCE 4 STRAIN: H168; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRCHISA KEYWDS FRUCTOKINASE, FRUCTOSE, KINASE, TRANSFERASE, CARBOHYDRATE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR T.K.CHUA,J.SEETHARAMAN,J.M.KASPRZAK,C.NG,B.K.PATEL,C.LOVE, AUTHOR 2 J.M.BUJNICKI,J.SIVARAMAN REVDAT 3 01-NOV-17 3HJ6 1 REMARK REVDAT 2 12-FEB-14 3HJ6 1 JRNL VERSN REVDAT 1 09-JUN-10 3HJ6 0 JRNL AUTH T.K.CHUA,J.SEETHARAMAN,J.M.KASPRZAK,C.NG,B.K.PATEL,C.LOVE, JRNL AUTH 2 J.M.BUJNICKI,J.SIVARAMAN JRNL TITL CRYSTAL STRUCTURE OF A FRUCTOKINASE HOMOLOG FROM JRNL TITL 2 HALOTHERMOTHRIX ORENII JRNL REF J.STRUCT.BIOL. V. 171 397 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20493950 JRNL DOI 10.1016/J.JSB.2010.05.007 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 27077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1846 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3937 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.08400 REMARK 3 B22 (A**2) : 2.61300 REMARK 3 B33 (A**2) : -4.69600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.22100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.590 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 58.87 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FILE CONTAINS FRIEDEL PAIRS. REMARK 4 REMARK 4 3HJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790, 0.9794, 0.9600 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30770 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5290 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG4000, 0.8M LICL2, 0.1M TRIS-HCL, REMARK 280 PH 8.5, EVAPORATION, TEMPERATURE 297.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 85.97050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 VAL A 6 REMARK 465 ILE A 7 REMARK 465 VAL A 8 REMARK 465 GLY A 9 REMARK 465 ILE A 10 REMARK 465 LEU A 11 REMARK 465 ASN A 12 REMARK 465 LYS A 13 REMARK 465 ASN A 14 REMARK 465 PHE A 15 REMARK 465 SER A 16 REMARK 465 LEU A 17 REMARK 465 SER A 18 REMARK 465 LYS A 19 REMARK 465 GLY A 20 REMARK 465 ASP A 21 REMARK 465 ARG A 144 REMARK 465 SER A 145 REMARK 465 ALA A 267 REMARK 465 VAL A 268 REMARK 465 ASP A 269 REMARK 465 VAL A 270 REMARK 465 THR A 271 REMARK 465 ARG A 307 REMARK 465 GLY A 308 REMARK 465 VAL A 309 REMARK 465 GLY A 310 REMARK 465 ALA A 311 REMARK 465 LEU A 312 REMARK 465 SER A 313 REMARK 465 PRO A 314 REMARK 465 VAL A 315 REMARK 465 PRO A 316 REMARK 465 SER A 317 REMARK 465 LYS A 318 REMARK 465 GLU A 319 REMARK 465 ASP A 320 REMARK 465 ILE A 321 REMARK 465 ILE A 322 REMARK 465 LYS A 323 REMARK 465 GLU A 324 REMARK 465 TYR A 325 REMARK 465 ASN A 326 REMARK 465 ILE A 327 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 5 REMARK 465 VAL B 6 REMARK 465 ILE B 7 REMARK 465 VAL B 8 REMARK 465 GLY B 9 REMARK 465 ILE B 10 REMARK 465 LEU B 11 REMARK 465 ASN B 12 REMARK 465 LYS B 13 REMARK 465 ASN B 14 REMARK 465 PHE B 15 REMARK 465 SER B 16 REMARK 465 LEU B 17 REMARK 465 SER B 18 REMARK 465 LYS B 19 REMARK 465 GLY B 20 REMARK 465 ASP B 21 REMARK 465 ARG B 144 REMARK 465 SER B 145 REMARK 465 ALA B 267 REMARK 465 VAL B 268 REMARK 465 ASP B 269 REMARK 465 VAL B 270 REMARK 465 THR B 271 REMARK 465 ARG B 307 REMARK 465 GLY B 308 REMARK 465 VAL B 309 REMARK 465 GLY B 310 REMARK 465 ALA B 311 REMARK 465 LEU B 312 REMARK 465 SER B 313 REMARK 465 PRO B 314 REMARK 465 VAL B 315 REMARK 465 PRO B 316 REMARK 465 SER B 317 REMARK 465 LYS B 318 REMARK 465 GLU B 319 REMARK 465 ASP B 320 REMARK 465 ILE B 321 REMARK 465 ILE B 322 REMARK 465 LYS B 323 REMARK 465 GLU B 324 REMARK 465 TYR B 325 REMARK 465 ASN B 326 REMARK 465 ILE B 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ASN A 41 CB CG OD1 ND2 REMARK 470 SER A 42 OG REMARK 470 SER A 65 CB OG REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 115 CB CG CD CE NZ REMARK 470 SER A 116 CB OG REMARK 470 THR A 117 CB OG1 CG2 REMARK 470 ARG A 118 CB CG CD NE CZ NH1 NH2 REMARK 470 THR A 119 CB OG1 CG2 REMARK 470 PRO A 120 CB CG CD REMARK 470 ASP A 121 CB CG OD1 OD2 REMARK 470 ILE A 138 CB CG1 CG2 CD1 REMARK 470 PHE A 139 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLU A 201 CB CG CD OE1 OE2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 223 CB CG OD1 OD2 REMARK 470 SER A 224 CB OG REMARK 470 LYS A 230 CB CG CD CE NZ REMARK 470 TYR A 232 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 232 OH REMARK 470 LEU A 233 CB CG CD1 CD2 REMARK 470 GLU A 234 CB CG CD OE1 OE2 REMARK 470 LEU A 235 CB CG CD1 CD2 REMARK 470 LYS A 238 CB CG CD CE NZ REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 PHE A 263 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 264 OG REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 TYR A 289 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 ALA A 302 CB REMARK 470 ALA A 303 CB REMARK 470 PHE A 304 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 ILE A 306 CB CG1 CG2 CD1 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 ASN B 41 CB CG OD1 ND2 REMARK 470 SER B 42 OG REMARK 470 SER B 65 CB OG REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLN B 94 CG CD OE1 NE2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 SER B 116 CB OG REMARK 470 THR B 117 CB OG1 CG2 REMARK 470 ARG B 118 CB CG CD NE CZ NH1 NH2 REMARK 470 THR B 119 CB OG1 CG2 REMARK 470 PRO B 120 CB CG CD REMARK 470 ASP B 121 CB CG OD1 OD2 REMARK 470 ILE B 138 CB CG1 CG2 CD1 REMARK 470 PHE B 139 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 141 CG CD1 CD2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 GLU B 191 CG CD OE1 OE2 REMARK 470 GLU B 201 CB CG CD OE1 OE2 REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 223 CB CG OD1 OD2 REMARK 470 SER B 224 CB OG REMARK 470 LYS B 230 CB CG CD CE NZ REMARK 470 TYR B 232 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 232 OH REMARK 470 LEU B 233 CB CG CD1 CD2 REMARK 470 GLU B 234 CB CG CD OE1 OE2 REMARK 470 LEU B 235 CB CG CD1 CD2 REMARK 470 LYS B 238 CB CG CD CE NZ REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 PHE B 263 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 264 OG REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 470 ASP B 266 CG OD1 OD2 REMARK 470 TYR B 289 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 ARG B 293 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 296 CG CD CE NZ REMARK 470 ALA B 302 CB REMARK 470 ALA B 303 CB REMARK 470 PHE B 304 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 305 CB CG CD CE NZ REMARK 470 ILE B 306 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 112 OH TYR B 112 1.97 REMARK 500 O SER B 36 O SER B 114 2.16 REMARK 500 O PRO A 124 NH1 ARG B 107 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 121 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 PRO A 261 C - N - CA ANGL. DEV. = -10.3 DEGREES REMARK 500 ALA A 303 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG B 118 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 PRO B 261 C - N - CA ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 79 71.79 -105.32 REMARK 500 LYS A 115 111.23 61.66 REMARK 500 THR A 119 25.00 158.65 REMARK 500 PRO A 120 -133.36 -56.99 REMARK 500 ASP A 121 128.38 125.42 REMARK 500 GLU A 127 -106.32 -155.46 REMARK 500 ASP A 135 -71.87 -123.43 REMARK 500 LYS A 158 -58.08 -19.04 REMARK 500 ASP A 223 59.61 -48.35 REMARK 500 SER A 224 135.13 148.05 REMARK 500 GLU A 226 -16.80 -162.80 REMARK 500 VAL A 229 -8.91 -51.28 REMARK 500 GLU A 234 26.99 -68.39 REMARK 500 LEU A 235 -27.81 80.60 REMARK 500 VAL A 237 -152.94 37.47 REMARK 500 LYS A 238 -122.66 32.17 REMARK 500 GLU A 246 32.96 -74.73 REMARK 500 GLU A 247 17.85 -150.07 REMARK 500 SER A 252 141.37 -170.80 REMARK 500 ILE A 260 -87.37 -59.38 REMARK 500 GLU A 265 30.56 -96.89 REMARK 500 ALA A 273 52.46 -116.83 REMARK 500 ASP A 287 -126.20 -116.68 REMARK 500 TYR A 289 140.26 59.02 REMARK 500 VAL A 301 73.51 -110.09 REMARK 500 ALA A 303 -104.00 13.78 REMARK 500 PHE A 304 -15.33 172.58 REMARK 500 LYS A 305 -80.07 -45.90 REMARK 500 ASP B 23 -71.32 -86.42 REMARK 500 ALA B 79 71.13 -102.53 REMARK 500 LYS B 115 -24.92 79.30 REMARK 500 SER B 116 -165.42 -43.82 REMARK 500 THR B 117 -128.81 -6.49 REMARK 500 ASP B 121 142.44 173.46 REMARK 500 GLU B 127 -107.38 -155.92 REMARK 500 ASP B 135 -71.16 -123.15 REMARK 500 LYS B 158 -57.92 -18.36 REMARK 500 ASP B 223 59.91 -47.80 REMARK 500 SER B 224 136.78 147.60 REMARK 500 GLU B 226 -16.77 -161.89 REMARK 500 VAL B 229 -8.49 -50.28 REMARK 500 GLU B 234 28.54 -69.77 REMARK 500 LEU B 235 -28.29 78.32 REMARK 500 VAL B 237 -153.66 38.08 REMARK 500 LYS B 238 -122.74 33.34 REMARK 500 GLU B 246 33.66 -73.58 REMARK 500 GLU B 247 16.19 -149.71 REMARK 500 SER B 252 139.92 -170.15 REMARK 500 ILE B 260 -89.59 -58.44 REMARK 500 GLU B 265 30.37 -97.00 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHOR SAID THAT THIS SEQUENCE IS VARIANT. DBREF 3HJ6 A 9 327 UNP B8CZ52 B8CZ52_HALOH 2 320 DBREF 3HJ6 B 9 327 UNP B8CZ52 B8CZ52_HALOH 2 320 SEQADV 3HJ6 MSE A 1 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 LYS A 2 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 GLY A 3 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 GLU A 4 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 GLY A 5 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 VAL A 6 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 ILE A 7 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 VAL A 8 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 MSE B 1 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 LYS B 2 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 GLY B 3 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 GLU B 4 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 GLY B 5 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 VAL B 6 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 ILE B 7 UNP B8CZ52 SEE REMARK 999 SEQADV 3HJ6 VAL B 8 UNP B8CZ52 SEE REMARK 999 SEQRES 1 A 327 MSE LYS GLY GLU GLY VAL ILE VAL GLY ILE LEU ASN LYS SEQRES 2 A 327 ASN PHE SER LEU SER LYS GLY ASP LEU ASP VAL VAL SER SEQRES 3 A 327 LEU GLY GLU ILE LEU VAL ASP MSE ILE SER THR GLU GLU SEQRES 4 A 327 VAL ASN SER LEU SER GLN SER ARG GLU TYR THR ARG HIS SEQRES 5 A 327 PHE GLY GLY SER PRO ALA ASN ILE ALA VAL ASN LEU SER SEQRES 6 A 327 ARG LEU GLY LYS LYS VAL ALA LEU ILE SER ARG LEU GLY SEQRES 7 A 327 ALA ASP ALA PHE GLY ASN TYR LEU LEU ASP VAL LEU LYS SEQRES 8 A 327 GLY GLU GLN ILE ILE THR ASP GLY ILE GLN GLN ASP LYS SEQRES 9 A 327 GLU ARG ARG THR THR ILE VAL TYR VAL SER LYS SER THR SEQRES 10 A 327 ARG THR PRO ASP TRP LEU PRO TYR ARG GLU ALA ASP MSE SEQRES 11 A 327 TYR LEU GLN GLU ASP ASP ILE ILE PHE GLU LEU ILE LYS SEQRES 12 A 327 ARG SER LYS VAL PHE HIS LEU SER THR PHE ILE LEU SER SEQRES 13 A 327 ARG LYS PRO ALA ARG ASP THR ALA ILE LYS ALA PHE ASN SEQRES 14 A 327 TYR ALA ARG GLU GLN GLY LYS ILE VAL CYS PHE ASP PRO SEQRES 15 A 327 CYS TYR ARG LYS VAL LEU TRP PRO GLU GLY ASP ASP GLY SEQRES 16 A 327 ALA GLY VAL VAL GLU GLU ILE ILE SER ARG ALA ASP PHE SEQRES 17 A 327 VAL LYS PRO SER LEU ASP ASP ALA ARG HIS LEU PHE GLY SEQRES 18 A 327 PRO ASP SER PRO GLU ASN TYR VAL LYS ARG TYR LEU GLU SEQRES 19 A 327 LEU GLY VAL LYS ALA VAL ILE LEU THR LEU GLY GLU GLU SEQRES 20 A 327 GLY VAL ILE ALA SER ASP GLY GLU GLU ILE ILE ARG ILE SEQRES 21 A 327 PRO ALA PHE SER GLU ASP ALA VAL ASP VAL THR GLY ALA SEQRES 22 A 327 GLY ASP ALA PHE TRP SER GLY PHE ILE CYS GLY LEU LEU SEQRES 23 A 327 ASP GLY TYR THR VAL LYS ARG SER ILE LYS LEU GLY ASN SEQRES 24 A 327 GLY VAL ALA ALA PHE LYS ILE ARG GLY VAL GLY ALA LEU SEQRES 25 A 327 SER PRO VAL PRO SER LYS GLU ASP ILE ILE LYS GLU TYR SEQRES 26 A 327 ASN ILE SEQRES 1 B 327 MSE LYS GLY GLU GLY VAL ILE VAL GLY ILE LEU ASN LYS SEQRES 2 B 327 ASN PHE SER LEU SER LYS GLY ASP LEU ASP VAL VAL SER SEQRES 3 B 327 LEU GLY GLU ILE LEU VAL ASP MSE ILE SER THR GLU GLU SEQRES 4 B 327 VAL ASN SER LEU SER GLN SER ARG GLU TYR THR ARG HIS SEQRES 5 B 327 PHE GLY GLY SER PRO ALA ASN ILE ALA VAL ASN LEU SER SEQRES 6 B 327 ARG LEU GLY LYS LYS VAL ALA LEU ILE SER ARG LEU GLY SEQRES 7 B 327 ALA ASP ALA PHE GLY ASN TYR LEU LEU ASP VAL LEU LYS SEQRES 8 B 327 GLY GLU GLN ILE ILE THR ASP GLY ILE GLN GLN ASP LYS SEQRES 9 B 327 GLU ARG ARG THR THR ILE VAL TYR VAL SER LYS SER THR SEQRES 10 B 327 ARG THR PRO ASP TRP LEU PRO TYR ARG GLU ALA ASP MSE SEQRES 11 B 327 TYR LEU GLN GLU ASP ASP ILE ILE PHE GLU LEU ILE LYS SEQRES 12 B 327 ARG SER LYS VAL PHE HIS LEU SER THR PHE ILE LEU SER SEQRES 13 B 327 ARG LYS PRO ALA ARG ASP THR ALA ILE LYS ALA PHE ASN SEQRES 14 B 327 TYR ALA ARG GLU GLN GLY LYS ILE VAL CYS PHE ASP PRO SEQRES 15 B 327 CYS TYR ARG LYS VAL LEU TRP PRO GLU GLY ASP ASP GLY SEQRES 16 B 327 ALA GLY VAL VAL GLU GLU ILE ILE SER ARG ALA ASP PHE SEQRES 17 B 327 VAL LYS PRO SER LEU ASP ASP ALA ARG HIS LEU PHE GLY SEQRES 18 B 327 PRO ASP SER PRO GLU ASN TYR VAL LYS ARG TYR LEU GLU SEQRES 19 B 327 LEU GLY VAL LYS ALA VAL ILE LEU THR LEU GLY GLU GLU SEQRES 20 B 327 GLY VAL ILE ALA SER ASP GLY GLU GLU ILE ILE ARG ILE SEQRES 21 B 327 PRO ALA PHE SER GLU ASP ALA VAL ASP VAL THR GLY ALA SEQRES 22 B 327 GLY ASP ALA PHE TRP SER GLY PHE ILE CYS GLY LEU LEU SEQRES 23 B 327 ASP GLY TYR THR VAL LYS ARG SER ILE LYS LEU GLY ASN SEQRES 24 B 327 GLY VAL ALA ALA PHE LYS ILE ARG GLY VAL GLY ALA LEU SEQRES 25 B 327 SER PRO VAL PRO SER LYS GLU ASP ILE ILE LYS GLU TYR SEQRES 26 B 327 ASN ILE MODRES 3HJ6 MSE A 34 MET SELENOMETHIONINE MODRES 3HJ6 MSE A 130 MET SELENOMETHIONINE MODRES 3HJ6 MSE B 34 MET SELENOMETHIONINE MODRES 3HJ6 MSE B 130 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 130 8 HET MSE B 34 8 HET MSE B 130 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *142(H2 O) HELIX 1 1 SER A 42 SER A 46 5 5 HELIX 2 2 GLY A 55 LEU A 67 1 13 HELIX 3 3 ASP A 80 GLU A 93 1 14 HELIX 4 4 GLU A 127 LEU A 132 5 6 HELIX 5 5 ILE A 137 LYS A 143 1 7 HELIX 6 6 THR A 152 ARG A 157 1 6 HELIX 7 7 ARG A 157 GLN A 174 1 18 HELIX 8 8 ARG A 185 TRP A 189 5 5 HELIX 9 9 GLY A 195 SER A 204 1 10 HELIX 10 10 SER A 212 GLY A 221 1 10 HELIX 11 11 GLU A 226 LEU A 233 5 8 HELIX 12 12 ALA A 273 GLY A 284 1 12 HELIX 13 13 VAL A 291 GLY A 300 1 10 HELIX 14 14 SER B 42 SER B 46 5 5 HELIX 15 15 GLY B 55 LEU B 67 1 13 HELIX 16 16 ASP B 80 GLU B 93 1 14 HELIX 17 17 GLU B 127 LEU B 132 5 6 HELIX 18 18 ILE B 137 LYS B 143 1 7 HELIX 19 19 THR B 152 ARG B 157 1 6 HELIX 20 20 ARG B 157 GLN B 174 1 18 HELIX 21 21 ARG B 185 TRP B 189 5 5 HELIX 22 22 GLY B 195 SER B 204 1 10 HELIX 23 23 SER B 212 GLY B 221 1 10 HELIX 24 24 GLU B 226 LEU B 233 5 8 HELIX 25 25 ALA B 273 GLY B 284 1 12 HELIX 26 26 VAL B 291 GLY B 300 1 10 SHEET 1 A 8 VAL A 71 ILE A 74 0 SHEET 2 A 8 VAL A 24 LEU A 27 1 N SER A 26 O ILE A 74 SHEET 3 A 8 VAL A 147 SER A 151 1 O VAL A 147 N VAL A 25 SHEET 4 A 8 ILE A 177 ASP A 181 1 O CYS A 179 N LEU A 150 SHEET 5 A 8 PHE A 208 VAL A 209 1 O PHE A 208 N PHE A 180 SHEET 6 A 8 ALA A 239 THR A 243 1 O ILE A 241 N VAL A 209 SHEET 7 A 8 VAL A 249 SER A 252 -1 O ILE A 250 N LEU A 242 SHEET 8 A 8 ILE A 257 ARG A 259 -1 O ILE A 258 N ALA A 251 SHEET 1 B 8 TRP A 122 TYR A 125 0 SHEET 2 B 8 ILE A 110 VAL A 113 -1 N TYR A 112 O LEU A 123 SHEET 3 B 8 LEU A 31 ILE A 35 1 N MSE A 34 O VAL A 113 SHEET 4 B 8 GLU A 48 GLY A 54 -1 O HIS A 52 N ASP A 33 SHEET 5 B 8 GLU B 48 GLY B 54 -1 O TYR B 49 N TYR A 49 SHEET 6 B 8 LEU B 31 ILE B 35 -1 N ASP B 33 O HIS B 52 SHEET 7 B 8 ILE B 110 VAL B 113 1 O VAL B 113 N MSE B 34 SHEET 8 B 8 TRP B 122 TYR B 125 -1 O LEU B 123 N TYR B 112 SHEET 1 C 2 ARG A 76 GLY A 78 0 SHEET 2 C 2 GLN A 101 ASP A 103 1 O ASP A 103 N LEU A 77 SHEET 1 D 8 VAL B 71 ILE B 74 0 SHEET 2 D 8 VAL B 24 LEU B 27 1 N SER B 26 O ILE B 74 SHEET 3 D 8 VAL B 147 SER B 151 1 O VAL B 147 N VAL B 25 SHEET 4 D 8 ILE B 177 ASP B 181 1 O CYS B 179 N LEU B 150 SHEET 5 D 8 PHE B 208 VAL B 209 1 O PHE B 208 N PHE B 180 SHEET 6 D 8 ALA B 239 THR B 243 1 O ILE B 241 N VAL B 209 SHEET 7 D 8 VAL B 249 SER B 252 -1 O ILE B 250 N LEU B 242 SHEET 8 D 8 ILE B 257 ARG B 259 -1 O ILE B 258 N ALA B 251 SHEET 1 E 2 ARG B 76 GLY B 78 0 SHEET 2 E 2 GLN B 101 ASP B 103 1 O ASP B 103 N LEU B 77 LINK C ASP A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N ILE A 35 1555 1555 1.33 LINK C ASP A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N TYR A 131 1555 1555 1.33 LINK C ASP B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N ILE B 35 1555 1555 1.33 LINK C ASP B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N TYR B 131 1555 1555 1.33 CRYST1 43.446 171.941 46.598 90.00 112.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023017 0.000000 0.009756 0.00000 SCALE2 0.000000 0.005816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023308 0.00000