HEADER HYDROLASE 21-MAY-09 3HJG TITLE CRYSTAL STRUCTURE OF PUTATIVE ALPHA-RIBAZOLE-5'-PHOSPHATE PHOSPHATASE TITLE 2 COBC FROM VIBRIO PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALPHA-RIBAZOLE-5'-PHOSPHATE PHOSPHATASE COBC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 GENE: VP1307; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL(STRATAGENE); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS PHOSPHATASE, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,C.MORANO,M.RUTTER,M.IIZUKA,J.M.SAUDER,S.K.BURLEY, AUTHOR 2 S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 4 21-FEB-24 3HJG 1 REMARK REVDAT 3 10-FEB-21 3HJG 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 21-NOV-18 3HJG 1 AUTHOR REVDAT 1 02-JUN-09 3HJG 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,C.MORANO,M.RUTTER,M.IIZUKA,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ALPHA-RIBAZOLE-5' -PHOSPHATE JRNL TITL 2 PHOSPHATASE FROM VIBRIO PARAHAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 26642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 18.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.5980 REMARK 3 BIN FREE R VALUE SET COUNT : 8 REMARK 3 BIN FREE R VALUE : 0.4960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 127.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.25000 REMARK 3 B22 (A**2) : -4.25000 REMARK 3 B33 (A**2) : 8.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.371 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.285 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.338 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3285 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4477 ; 1.153 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 6.920 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;39.260 ;24.834 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;20.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2465 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1463 ; 0.129 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2169 ; 0.298 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 155 ; 0.131 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.078 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.111 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2063 ; 1.895 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3260 ; 3.504 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1394 ; 3.932 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1216 ; 6.262 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 102 ; 0.72 ; 0.10 REMARK 3 TIGHT THERMAL 1 A (A**2): 102 ; 2.42 ; 5.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 436 ; 0.46 ; 0.10 REMARK 3 TIGHT THERMAL 2 A (A**2): 436 ; 4.91 ; 5.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 676 ; 0.56 ; 0.10 REMARK 3 TIGHT THERMAL 3 A (A**2): 676 ; 3.82 ; 5.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37362 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13200 REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DIFFRACTION DATA WERE CORRECTED AND TRUNCATED DUE TO REMARK 200 ANISOTROPY REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% ISOPROPANOL, 2000 MM AMMONIUM REMARK 280 SULFATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.35850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.60750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.60750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.67925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.60750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.60750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.03775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.60750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.60750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.67925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.60750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.60750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.03775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.35850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 GLU A 204 REMARK 465 GLY A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 GLU B 204 REMARK 465 GLY B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 115 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 PRO B 115 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 -158.07 -94.14 REMARK 500 LYS A 100 59.09 -101.37 REMARK 500 PRO A 115 -56.00 -0.71 REMARK 500 ASP A 140 -168.14 57.37 REMARK 500 ASP A 187 -97.61 -136.04 REMARK 500 GLN A 189 166.91 49.84 REMARK 500 ARG A 195 -97.61 -75.92 REMARK 500 ARG A 195 -96.78 -76.52 REMARK 500 VAL A 202 -101.56 -121.18 REMARK 500 GLU B 81 -178.75 -65.50 REMARK 500 ASP B 83 81.72 58.98 REMARK 500 ASP B 88 -78.80 -127.70 REMARK 500 PRO B 91 55.31 -11.34 REMARK 500 PHE B 92 42.27 -83.66 REMARK 500 HIS B 98 48.53 -91.93 REMARK 500 LEU B 102 67.63 39.15 REMARK 500 PRO B 115 51.30 -14.68 REMARK 500 ASN B 116 -19.34 -166.26 REMARK 500 ASP B 140 -178.61 71.12 REMARK 500 THR B 146 -155.31 -150.12 REMARK 500 ASP B 187 -107.65 -144.05 REMARK 500 ARG B 195 -103.28 -79.71 REMARK 500 VAL B 202 -148.67 52.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11293D RELATED DB: TARGETDB DBREF 3HJG A 2 203 UNP Q87Q43 Q87Q43_VIBPA 2 203 DBREF 3HJG B 2 203 UNP Q87Q43 Q87Q43_VIBPA 2 203 SEQADV 3HJG MET A -1 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG SER A 0 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG LEU A 1 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG GLU A 204 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG GLY A 205 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS A 206 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS A 207 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS A 208 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS A 209 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS A 210 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS A 211 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG MET B -1 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG SER B 0 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG LEU B 1 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG GLU B 204 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG GLY B 205 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS B 206 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS B 207 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS B 208 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS B 209 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS B 210 UNP Q87Q43 EXPRESSION TAG SEQADV 3HJG HIS B 211 UNP Q87Q43 EXPRESSION TAG SEQRES 1 A 213 MET SER LEU LYS THR LEU ASN ILE TYR LEU MET ARG HIS SEQRES 2 A 213 GLY LYS VAL ASP ALA ALA PRO GLY LEU HIS GLY GLN THR SEQRES 3 A 213 ASP LEU LYS VAL LYS GLU ALA GLU GLN GLN GLN ILE ALA SEQRES 4 A 213 MET ALA TRP LYS THR LYS GLY TYR ASP VAL ALA GLY ILE SEQRES 5 A 213 ILE SER SER PRO LEU SER ARG CYS HIS ASP LEU ALA GLN SEQRES 6 A 213 ILE LEU ALA GLU GLN GLN LEU LEU PRO MET THR THR GLU SEQRES 7 A 213 ASP ASP LEU GLN GLU MET ASP PHE GLY ASP PHE ASP GLY SEQRES 8 A 213 MET PRO PHE ASP LEU LEU THR GLU HIS TRP LYS LYS LEU SEQRES 9 A 213 ASP ALA PHE TRP GLN SER PRO ALA HIS HIS SER LEU PRO SEQRES 10 A 213 ASN ALA GLU SER LEU SER THR PHE SER GLN ARG VAL SER SEQRES 11 A 213 ARG ALA TRP SER GLN ILE ILE ASN ASP ILE ASN ASP ASN SEQRES 12 A 213 LEU LEU ILE VAL THR HIS GLY GLY VAL ILE ARG ILE ILE SEQRES 13 A 213 LEU ALA HIS VAL LEU GLY VAL ASP TRP ARG ASN PRO GLN SEQRES 14 A 213 TRP TYR SER THR LEU ALA ILE GLY ASN ALA SER VAL THR SEQRES 15 A 213 HIS ILE THR ILE THR ILE ASP ASP GLN ILE TYR ALA SER SEQRES 16 A 213 VAL ARG SER ILE GLY VAL PRO LEU VAL GLU GLU GLY HIS SEQRES 17 A 213 HIS HIS HIS HIS HIS SEQRES 1 B 213 MET SER LEU LYS THR LEU ASN ILE TYR LEU MET ARG HIS SEQRES 2 B 213 GLY LYS VAL ASP ALA ALA PRO GLY LEU HIS GLY GLN THR SEQRES 3 B 213 ASP LEU LYS VAL LYS GLU ALA GLU GLN GLN GLN ILE ALA SEQRES 4 B 213 MET ALA TRP LYS THR LYS GLY TYR ASP VAL ALA GLY ILE SEQRES 5 B 213 ILE SER SER PRO LEU SER ARG CYS HIS ASP LEU ALA GLN SEQRES 6 B 213 ILE LEU ALA GLU GLN GLN LEU LEU PRO MET THR THR GLU SEQRES 7 B 213 ASP ASP LEU GLN GLU MET ASP PHE GLY ASP PHE ASP GLY SEQRES 8 B 213 MET PRO PHE ASP LEU LEU THR GLU HIS TRP LYS LYS LEU SEQRES 9 B 213 ASP ALA PHE TRP GLN SER PRO ALA HIS HIS SER LEU PRO SEQRES 10 B 213 ASN ALA GLU SER LEU SER THR PHE SER GLN ARG VAL SER SEQRES 11 B 213 ARG ALA TRP SER GLN ILE ILE ASN ASP ILE ASN ASP ASN SEQRES 12 B 213 LEU LEU ILE VAL THR HIS GLY GLY VAL ILE ARG ILE ILE SEQRES 13 B 213 LEU ALA HIS VAL LEU GLY VAL ASP TRP ARG ASN PRO GLN SEQRES 14 B 213 TRP TYR SER THR LEU ALA ILE GLY ASN ALA SER VAL THR SEQRES 15 B 213 HIS ILE THR ILE THR ILE ASP ASP GLN ILE TYR ALA SER SEQRES 16 B 213 VAL ARG SER ILE GLY VAL PRO LEU VAL GLU GLU GLY HIS SEQRES 17 B 213 HIS HIS HIS HIS HIS HET SO4 A 212 5 HET SO4 B 212 5 HET SO4 B 213 5 HET SO4 B 214 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) HELIX 1 1 LYS A 29 LYS A 43 1 15 HELIX 2 2 LEU A 55 LEU A 70 1 16 HELIX 3 3 ASP A 77 GLN A 80 5 4 HELIX 4 4 ASP A 93 HIS A 98 1 6 HELIX 5 5 LEU A 102 SER A 108 1 7 HELIX 6 6 PRO A 109 HIS A 112 5 4 HELIX 7 7 SER A 119 ILE A 138 1 20 HELIX 8 8 HIS A 147 LEU A 159 1 13 HELIX 9 9 PRO A 166 LEU A 172 1 7 HELIX 10 10 LEU B 20 GLY B 22 5 3 HELIX 11 11 LYS B 29 LYS B 43 1 15 HELIX 12 12 LEU B 55 GLN B 69 1 15 HELIX 13 13 SER B 119 ILE B 138 1 20 HELIX 14 14 HIS B 147 LEU B 159 1 13 HELIX 15 15 PRO B 166 THR B 171 1 6 SHEET 1 A 6 MET A 73 THR A 75 0 SHEET 2 A 6 ILE A 50 SER A 52 1 N SER A 52 O THR A 74 SHEET 3 A 6 LEU A 142 THR A 146 1 O LEU A 143 N ILE A 51 SHEET 4 A 6 THR A 3 ARG A 10 1 N TYR A 7 O ILE A 144 SHEET 5 A 6 SER A 178 ILE A 186 -1 O THR A 180 N LEU A 8 SHEET 6 A 6 ILE A 190 VAL A 194 -1 O TYR A 191 N THR A 185 SHEET 1 B 6 MET A 73 THR A 75 0 SHEET 2 B 6 ILE A 50 SER A 52 1 N SER A 52 O THR A 74 SHEET 3 B 6 LEU A 142 THR A 146 1 O LEU A 143 N ILE A 51 SHEET 4 B 6 THR A 3 ARG A 10 1 N TYR A 7 O ILE A 144 SHEET 5 B 6 SER A 178 ILE A 186 -1 O THR A 180 N LEU A 8 SHEET 6 B 6 VAL A 199 PRO A 200 -1 O VAL A 199 N VAL A 179 SHEET 1 C 6 MET B 73 THR B 75 0 SHEET 2 C 6 GLY B 49 SER B 52 1 N SER B 52 O THR B 74 SHEET 3 C 6 LEU B 142 THR B 146 1 O LEU B 143 N ILE B 51 SHEET 4 C 6 THR B 3 ARG B 10 1 N TYR B 7 O LEU B 142 SHEET 5 C 6 SER B 178 ILE B 186 -1 O ILE B 184 N LEU B 4 SHEET 6 C 6 ILE B 190 VAL B 194 -1 O SER B 193 N THR B 183 SHEET 1 D 6 MET B 73 THR B 75 0 SHEET 2 D 6 GLY B 49 SER B 52 1 N SER B 52 O THR B 74 SHEET 3 D 6 LEU B 142 THR B 146 1 O LEU B 143 N ILE B 51 SHEET 4 D 6 THR B 3 ARG B 10 1 N TYR B 7 O LEU B 142 SHEET 5 D 6 SER B 178 ILE B 186 -1 O ILE B 184 N LEU B 4 SHEET 6 D 6 VAL B 199 PRO B 200 -1 O VAL B 199 N VAL B 179 SHEET 1 E 2 VAL B 14 PRO B 18 0 SHEET 2 E 2 THR B 24 VAL B 28 -1 O ASP B 25 N ALA B 17 SITE 1 AC1 7 ARG A 10 HIS A 11 HIS A 21 ARG A 57 SITE 2 AC1 7 GLU A 81 HIS A 147 GLY A 148 SITE 1 AC2 2 ASP A 162 ASP B 162 SITE 1 AC3 3 HIS B 181 ARG B 195 SER B 196 SITE 1 AC4 6 ARG B 10 HIS B 11 ARG B 57 GLU B 81 SITE 2 AC4 6 HIS B 147 GLY B 148 CRYST1 107.215 107.215 206.717 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009327 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004838 0.00000