HEADER OXIDOREDUCTASE 22-MAY-09 3HJS TITLE CRYSTAL STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM RHODOCOCCUS OPACUS TITLE 2 1CP IN COMPLEX WITH 4-METHYLCATECHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,2-CTD; COMPND 5 EC: 1.13.11.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS OPACUS; SOURCE 3 ORGANISM_COMMON: NOCARDIA OPACA; SOURCE 4 ORGANISM_TAXID: 37919; SOURCE 5 STRAIN: 1CP; SOURCE 6 OTHER_DETAILS: GROWN ON BENZOATE KEYWDS BETA-SANDWICH, OXIDOREDUCTASE, AROMATIC HYDROCARBONS CATABOLISM, KEYWDS 2 DIOXYGENASE, IRON, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR I.MATERA,M.FERRARONI,F.BRIGANTI,A.SCOZZAFAVA REVDAT 3 06-SEP-23 3HJS 1 REMARK REVDAT 2 26-MAY-10 3HJS 1 JRNL REVDAT 1 12-JAN-10 3HJS 0 JRNL AUTH I.MATERA,M.FERRARONI,M.KOLOMYTSEVA,L.GOLOVLEVA,A.SCOZZAFAVA, JRNL AUTH 2 F.BRIGANTI JRNL TITL CATECHOL 1,2-DIOXYGENASE FROM THE GRAM-POSITIVE RHODOCOCCUS JRNL TITL 2 OPACUS 1CP: QUANTITATIVE STRUCTURE/ACTIVITY RELATIONSHIP AND JRNL TITL 3 THE CRYSTAL STRUCTURES OF NATIVE ENZYME AND CATECHOLS JRNL TITL 4 ADDUCTS. JRNL REF J.STRUCT.BIOL. V. 170 548 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20040374 JRNL DOI 10.1016/J.JSB.2009.12.023 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.277 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2114 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2880 ; 1.632 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 5.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;30.993 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 311 ;12.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;21.416 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1640 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1282 ; 1.066 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2073 ; 1.843 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 832 ; 2.982 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 805 ; 4.675 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22751 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : 0.23400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3HGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 39% PEG 400, 0.1 M HEPES, 0.1 M REMARK 280 MAGNESIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.68150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.68150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -7.57505 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.31694 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 299 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 PHE A 20 REMARK 465 LYS A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 ARG A 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 128 CE NZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 389 O HOH A 442 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 445 O HOH A 445 2556 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 57.15 -99.83 REMARK 500 ALA A 166 116.48 -161.05 REMARK 500 PRO A 215 34.98 -99.19 REMARK 500 SER A 247 56.39 -145.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6PL A 284 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 281 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 162 OH REMARK 620 2 HIS A 220 NE2 98.5 REMARK 620 3 HIS A 222 NE2 103.2 96.4 REMARK 620 4 MCT A 283 O4 91.7 110.5 146.9 REMARK 620 5 MCT A 283 O3 158.4 103.0 76.1 79.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 282 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 326 O REMARK 620 2 HOH A 386 O 97.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCT A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PL A 284 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HGI RELATED DB: PDB REMARK 900 NATIVE ENZYME REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE MATCHES THE GENBANK DEPOSITION WITH ACCESSION CODE REMARK 999 CAA67941, IN WHICH ALL 280 RESIDUES ARE PRESENT. DBREF 3HJS A 11 280 UNP P95607 CATA_RHOOP 1 270 SEQADV 3HJS MET A 1 UNP P95607 SEE REMARK 999 SEQADV 3HJS THR A 2 UNP P95607 SEE REMARK 999 SEQADV 3HJS THR A 3 UNP P95607 SEE REMARK 999 SEQADV 3HJS THR A 4 UNP P95607 SEE REMARK 999 SEQADV 3HJS GLU A 5 UNP P95607 SEE REMARK 999 SEQADV 3HJS SER A 6 UNP P95607 SEE REMARK 999 SEQADV 3HJS PRO A 7 UNP P95607 SEE REMARK 999 SEQADV 3HJS THR A 8 UNP P95607 SEE REMARK 999 SEQADV 3HJS ALA A 9 UNP P95607 SEE REMARK 999 SEQADV 3HJS ALA A 10 UNP P95607 SEE REMARK 999 SEQRES 1 A 280 MET THR THR THR GLU SER PRO THR ALA ALA GLY SER GLY SEQRES 2 A 280 SER ALA ALA THR ASP LYS PHE LYS ALA GLU ARG ALA THR SEQRES 3 A 280 ALA ASP THR SER PRO GLU ARG LEU ALA ALA ILE ALA LYS SEQRES 4 A 280 ASP ALA LEU GLY ALA LEU ASN ASP VAL ILE LEU LYS HIS SEQRES 5 A 280 GLY VAL THR TYR PRO GLU TYR ARG VAL PHE LYS GLN TRP SEQRES 6 A 280 LEU ILE ASP VAL GLY GLU GLY GLY GLU TRP PRO LEU PHE SEQRES 7 A 280 LEU ASP VAL PHE ILE GLU HIS SER VAL GLU GLU VAL LEU SEQRES 8 A 280 ALA ARG SER ARG LYS GLY THR MET GLY SER ILE GLU GLY SEQRES 9 A 280 PRO TYR TYR ILE GLU ASN SER PRO GLU LEU PRO SER LYS SEQRES 10 A 280 CYS THR LEU PRO MET ARG GLU GLU ASP GLU LYS ILE THR SEQRES 11 A 280 PRO LEU VAL PHE SER GLY GLN VAL THR ASP LEU ASP GLY SEQRES 12 A 280 ASN GLY LEU ALA GLY ALA LYS VAL GLU LEU TRP HIS ALA SEQRES 13 A 280 ASP ASN ASP GLY TYR TYR SER GLN PHE ALA PRO HIS LEU SEQRES 14 A 280 PRO GLU TRP ASN LEU ARG GLY THR ILE ILE ALA ASP GLU SEQRES 15 A 280 GLU GLY ARG TYR GLU ILE THR THR ILE GLN PRO ALA PRO SEQRES 16 A 280 TYR GLN ILE PRO THR ASP GLY PRO THR GLY GLN PHE ILE SEQRES 17 A 280 GLU ALA GLN ASN GLY HIS PRO TRP ARG PRO ALA HIS LEU SEQRES 18 A 280 HIS LEU ILE VAL SER ALA PRO GLY LYS GLU SER VAL THR SEQRES 19 A 280 THR GLN LEU TYR PHE LYS GLY GLY GLU TRP ILE ASP SER SEQRES 20 A 280 ASP VAL ALA SER ALA THR LYS PRO GLU LEU ILE LEU ASP SEQRES 21 A 280 PRO LYS THR GLY ASP ASP GLY LYS ASN TYR VAL THR TYR SEQRES 22 A 280 ASN PHE VAL LEU ASP PRO ALA HET FE A 281 1 HET MG A 282 1 HET MCT A 283 9 HET 6PL A 284 41 HETNAM FE FE (III) ION HETNAM MG MAGNESIUM ION HETNAM MCT 4-METHYLCATECHOL HETNAM 6PL (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7- HETNAM 2 6PL [(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4- HETNAM 3 6PL PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE HETSYN MCT 4-METHYL-1,2-BENZENEDIOL HETSYN 6PL 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE FORMUL 2 FE FE 3+ FORMUL 3 MG MG 2+ FORMUL 4 MCT C7 H8 O2 FORMUL 5 6PL C42 H85 N O8 P 1+ FORMUL 6 HOH *161(H2 O) HELIX 1 1 SER A 30 GLY A 53 1 24 HELIX 2 2 THR A 55 GLY A 72 1 18 HELIX 3 3 GLU A 74 ILE A 83 1 10 HELIX 4 4 ILE A 83 SER A 94 1 12 HELIX 5 5 GLU A 124 ILE A 129 5 6 HELIX 6 6 GLY A 202 GLN A 211 1 10 HELIX 7 7 LYS A 254 GLU A 256 5 3 SHEET 1 A 6 GLU A 113 LEU A 114 0 SHEET 2 A 6 ARG A 175 ILE A 179 1 O ILE A 179 N LEU A 114 SHEET 3 A 6 LYS A 150 TRP A 154 -1 N VAL A 151 O ILE A 178 SHEET 4 A 6 LEU A 221 SER A 226 -1 O ILE A 224 N GLU A 152 SHEET 5 A 6 VAL A 233 PHE A 239 -1 O THR A 235 N LEU A 223 SHEET 6 A 6 ILE A 258 LEU A 259 1 O LEU A 259 N TYR A 238 SHEET 1 B 5 LYS A 117 THR A 119 0 SHEET 2 B 5 ARG A 185 ILE A 191 1 O THR A 189 N CYS A 118 SHEET 3 B 5 PRO A 131 ASP A 140 -1 N PHE A 134 O ILE A 188 SHEET 4 B 5 ASN A 269 THR A 272 1 O ASN A 269 N VAL A 133 SHEET 5 B 5 LYS A 262 THR A 263 -1 N LYS A 262 O TYR A 270 SHEET 1 C 4 LYS A 117 THR A 119 0 SHEET 2 C 4 ARG A 185 ILE A 191 1 O THR A 189 N CYS A 118 SHEET 3 C 4 PRO A 131 ASP A 140 -1 N PHE A 134 O ILE A 188 SHEET 4 C 4 PHE A 275 LEU A 277 1 O PHE A 275 N THR A 139 SHEET 1 D 2 TYR A 196 GLN A 197 0 SHEET 2 D 2 TRP A 216 ARG A 217 -1 O ARG A 217 N TYR A 196 LINK OH TYR A 162 FE FE A 281 1555 1555 1.92 LINK NE2 HIS A 220 FE FE A 281 1555 1555 2.09 LINK NE2 HIS A 222 FE FE A 281 1555 1555 2.16 LINK FE FE A 281 O4 MCT A 283 1555 1555 2.09 LINK FE FE A 281 O3 MCT A 283 1555 1555 1.97 LINK MG MG A 282 O HOH A 326 1555 1555 2.35 LINK MG MG A 282 O HOH A 386 1555 1555 2.20 SITE 1 AC1 4 TYR A 162 HIS A 220 HIS A 222 MCT A 283 SITE 1 AC2 3 ASP A 142 HOH A 326 HOH A 386 SITE 1 AC3 11 ASP A 80 VAL A 81 GLY A 104 PRO A 105 SITE 2 AC3 11 TYR A 106 TYR A 162 TYR A 196 ARG A 217 SITE 3 AC3 11 HIS A 220 HIS A 222 FE A 281 SITE 1 AC4 8 THR A 29 LEU A 45 GLU A 58 VAL A 61 SITE 2 AC4 8 PHE A 62 TRP A 65 LEU A 79 GLN A 206 CRYST1 88.200 37.363 74.702 90.00 95.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011338 0.000000 0.001155 0.00000 SCALE2 0.000000 0.026764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013456 0.00000