HEADER HYDROLASE 27-MAY-09 3HLK TITLE CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL ACYL-COA THIOESTERASE (ACOT2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COENZYME A THIOESTERASE 2, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACYL-COA THIOESTERASE 2, ACYL-COENZYME A THIOESTER HYDROLASE COMPND 5 2A, LONG-CHAIN ACYL-COA THIOESTERASE 2, ZAP128, CTE-IA; COMPND 6 EC: 3.1.2.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACOT2, PTE2, PTE2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA HYDROLASE, ALTERNATIVE SPLICING, HYDROLASE, MITOCHONDRION, KEYWDS 2 POLYMORPHISM, SERINE ESTERASE, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.MANDEL,B.TWEEL,L.TONG REVDAT 3 01-NOV-17 3HLK 1 REMARK REVDAT 2 04-AUG-09 3HLK 1 JRNL REVDAT 1 23-JUN-09 3HLK 0 JRNL AUTH C.R.MANDEL,B.TWEEL,L.TONG JRNL TITL CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL ACYL-COA JRNL TITL 2 THIOESTERASE (ACOT2) JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 385 630 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19497300 JRNL DOI 10.1016/J.BBRC.2009.05.122 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 62312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3310 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6557 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8903 ; 1.249 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 815 ; 5.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;31.446 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1065 ;15.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;17.690 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 957 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5066 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2811 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4344 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 463 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.277 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4219 ; 0.800 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6558 ; 1.318 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2664 ; 1.734 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2345 ; 2.731 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0148 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.799 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB THEN SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 MM AMMONIUM CITRATE, 22% PEG3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.98333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.96667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.96667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.98333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 538 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 46 REMARK 465 SER A 47 REMARK 465 PRO A 48 REMARK 465 GLN A 49 REMARK 465 LEU A 50 REMARK 465 ARG A 51 REMARK 465 GLN A 52 REMARK 465 VAL A 53 REMARK 465 GLY A 54 REMARK 465 GLN A 55 REMARK 465 ILE A 56 REMARK 465 ILE A 57 REMARK 465 LEU A 436 REMARK 465 HIS A 437 REMARK 465 ALA A 438 REMARK 465 LEU A 439 REMARK 465 VAL A 440 REMARK 465 GLY A 441 REMARK 465 SER A 442 REMARK 465 GLY A 473 REMARK 465 GLY A 474 REMARK 465 HIS A 475 REMARK 465 GLU A 476 REMARK 465 GLY A 477 REMARK 465 THR A 478 REMARK 465 ILE A 479 REMARK 465 PRO A 480 REMARK 465 SER A 481 REMARK 465 LYS A 482 REMARK 465 VAL A 483 REMARK 465 LEU A 484 REMARK 465 GLU A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 GLY B 46 REMARK 465 SER B 47 REMARK 465 PRO B 48 REMARK 465 GLN B 49 REMARK 465 LEU B 50 REMARK 465 ARG B 51 REMARK 465 GLN B 52 REMARK 465 VAL B 53 REMARK 465 GLY B 54 REMARK 465 GLN B 55 REMARK 465 ILE B 56 REMARK 465 HIS B 437 REMARK 465 ALA B 438 REMARK 465 LEU B 439 REMARK 465 VAL B 440 REMARK 465 GLY B 441 REMARK 465 GLY B 473 REMARK 465 GLY B 474 REMARK 465 HIS B 475 REMARK 465 GLU B 476 REMARK 465 GLY B 477 REMARK 465 THR B 478 REMARK 465 ILE B 479 REMARK 465 PRO B 480 REMARK 465 SER B 481 REMARK 465 LYS B 482 REMARK 465 VAL B 483 REMARK 465 LEU B 484 REMARK 465 GLU B 485 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 376 O HOH A 685 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 353 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 356 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU B 100 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP B 353 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 366 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 459 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 91 19.89 59.24 REMARK 500 LEU A 152 -5.07 85.37 REMARK 500 GLU A 256 -127.77 46.89 REMARK 500 SER A 294 -130.06 56.19 REMARK 500 LYS A 330 -120.89 46.54 REMARK 500 THR A 347 147.76 -170.59 REMARK 500 ASP A 349 -151.25 -118.21 REMARK 500 TYR A 428 -2.68 67.82 REMARK 500 ARG B 74 109.67 -58.48 REMARK 500 TYR B 252 -8.18 -150.30 REMARK 500 GLU B 256 -130.72 56.60 REMARK 500 SER B 294 -136.39 68.79 REMARK 500 LYS B 330 -118.27 50.00 REMARK 500 THR B 347 143.89 -174.09 REMARK 500 PRO B 372 67.55 -69.08 REMARK 500 TYR B 428 -2.28 77.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 3HLK A 46 483 UNP P49753 ACOT2_HUMAN 46 483 DBREF 3HLK B 46 483 UNP P49753 ACOT2_HUMAN 46 483 SEQADV 3HLK LEU A 484 UNP P49753 EXPRESSION TAG SEQADV 3HLK GLU A 485 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS A 486 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS A 487 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS A 488 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS A 489 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS A 490 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS A 491 UNP P49753 EXPRESSION TAG SEQADV 3HLK LEU B 484 UNP P49753 EXPRESSION TAG SEQADV 3HLK GLU B 485 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS B 486 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS B 487 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS B 488 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS B 489 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS B 490 UNP P49753 EXPRESSION TAG SEQADV 3HLK HIS B 491 UNP P49753 EXPRESSION TAG SEQRES 1 A 446 GLY SER PRO GLN LEU ARG GLN VAL GLY GLN ILE ILE ARG SEQRES 2 A 446 VAL PRO ALA ARG MSE ALA ALA THR LEU ILE LEU GLU PRO SEQRES 3 A 446 ALA GLY ARG CYS CYS TRP ASP GLU PRO VAL ARG ILE ALA SEQRES 4 A 446 VAL ARG GLY LEU ALA PRO GLU GLN PRO VAL THR LEU ARG SEQRES 5 A 446 ALA SER LEU ARG ASP GLU LYS GLY ALA LEU PHE GLN ALA SEQRES 6 A 446 HIS ALA ARG TYR ARG ALA ASP THR LEU GLY GLU LEU ASP SEQRES 7 A 446 LEU GLU ARG ALA PRO ALA LEU GLY GLY SER PHE ALA GLY SEQRES 8 A 446 LEU GLU PRO MSE GLY LEU LEU TRP ALA LEU GLU PRO GLU SEQRES 9 A 446 LYS PRO LEU VAL ARG LEU VAL LYS ARG ASP VAL ARG THR SEQRES 10 A 446 PRO LEU ALA VAL GLU LEU GLU VAL LEU ASP GLY HIS ASP SEQRES 11 A 446 PRO ASP PRO GLY ARG LEU LEU CYS GLN THR ARG HIS GLU SEQRES 12 A 446 ARG TYR PHE LEU PRO PRO GLY VAL ARG ARG GLU PRO VAL SEQRES 13 A 446 ARG VAL GLY ARG VAL ARG GLY THR LEU PHE LEU PRO PRO SEQRES 14 A 446 GLU PRO GLY PRO PHE PRO GLY ILE VAL ASP MSE PHE GLY SEQRES 15 A 446 THR GLY GLY GLY LEU LEU GLU TYR ARG ALA SER LEU LEU SEQRES 16 A 446 ALA GLY LYS GLY PHE ALA VAL MSE ALA LEU ALA TYR TYR SEQRES 17 A 446 ASN TYR GLU ASP LEU PRO LYS THR MSE GLU THR LEU HIS SEQRES 18 A 446 LEU GLU TYR PHE GLU GLU ALA MSE ASN TYR LEU LEU SER SEQRES 19 A 446 HIS PRO GLU VAL LYS GLY PRO GLY VAL GLY LEU LEU GLY SEQRES 20 A 446 ILE SER LYS GLY GLY GLU LEU CYS LEU SER MSE ALA SER SEQRES 21 A 446 PHE LEU LYS GLY ILE THR ALA ALA VAL VAL ILE ASN GLY SEQRES 22 A 446 SER VAL ALA ASN VAL GLY GLY THR LEU ARG TYR LYS GLY SEQRES 23 A 446 GLU THR LEU PRO PRO VAL GLY VAL ASN ARG ASN ARG ILE SEQRES 24 A 446 LYS VAL THR LYS ASP GLY TYR ALA ASP ILE VAL ASP VAL SEQRES 25 A 446 LEU ASN SER PRO LEU GLU GLY PRO ASP GLN LYS SER PHE SEQRES 26 A 446 ILE PRO VAL GLU ARG ALA GLU SER THR PHE LEU PHE LEU SEQRES 27 A 446 VAL GLY GLN ASP ASP HIS ASN TRP LYS SER GLU PHE TYR SEQRES 28 A 446 ALA ASN GLU ALA CYS LYS ARG LEU GLN ALA HIS GLY ARG SEQRES 29 A 446 ARG LYS PRO GLN ILE ILE CYS TYR PRO GLU THR GLY HIS SEQRES 30 A 446 TYR ILE GLU PRO PRO TYR PHE PRO LEU CYS ARG ALA SER SEQRES 31 A 446 LEU HIS ALA LEU VAL GLY SER PRO ILE ILE TRP GLY GLY SEQRES 32 A 446 GLU PRO ARG ALA HIS ALA MSE ALA GLN VAL ASP ALA TRP SEQRES 33 A 446 LYS GLN LEU GLN THR PHE PHE HIS LYS HIS LEU GLY GLY SEQRES 34 A 446 HIS GLU GLY THR ILE PRO SER LYS VAL LEU GLU HIS HIS SEQRES 35 A 446 HIS HIS HIS HIS SEQRES 1 B 446 GLY SER PRO GLN LEU ARG GLN VAL GLY GLN ILE ILE ARG SEQRES 2 B 446 VAL PRO ALA ARG MSE ALA ALA THR LEU ILE LEU GLU PRO SEQRES 3 B 446 ALA GLY ARG CYS CYS TRP ASP GLU PRO VAL ARG ILE ALA SEQRES 4 B 446 VAL ARG GLY LEU ALA PRO GLU GLN PRO VAL THR LEU ARG SEQRES 5 B 446 ALA SER LEU ARG ASP GLU LYS GLY ALA LEU PHE GLN ALA SEQRES 6 B 446 HIS ALA ARG TYR ARG ALA ASP THR LEU GLY GLU LEU ASP SEQRES 7 B 446 LEU GLU ARG ALA PRO ALA LEU GLY GLY SER PHE ALA GLY SEQRES 8 B 446 LEU GLU PRO MSE GLY LEU LEU TRP ALA LEU GLU PRO GLU SEQRES 9 B 446 LYS PRO LEU VAL ARG LEU VAL LYS ARG ASP VAL ARG THR SEQRES 10 B 446 PRO LEU ALA VAL GLU LEU GLU VAL LEU ASP GLY HIS ASP SEQRES 11 B 446 PRO ASP PRO GLY ARG LEU LEU CYS GLN THR ARG HIS GLU SEQRES 12 B 446 ARG TYR PHE LEU PRO PRO GLY VAL ARG ARG GLU PRO VAL SEQRES 13 B 446 ARG VAL GLY ARG VAL ARG GLY THR LEU PHE LEU PRO PRO SEQRES 14 B 446 GLU PRO GLY PRO PHE PRO GLY ILE VAL ASP MSE PHE GLY SEQRES 15 B 446 THR GLY GLY GLY LEU LEU GLU TYR ARG ALA SER LEU LEU SEQRES 16 B 446 ALA GLY LYS GLY PHE ALA VAL MSE ALA LEU ALA TYR TYR SEQRES 17 B 446 ASN TYR GLU ASP LEU PRO LYS THR MSE GLU THR LEU HIS SEQRES 18 B 446 LEU GLU TYR PHE GLU GLU ALA MSE ASN TYR LEU LEU SER SEQRES 19 B 446 HIS PRO GLU VAL LYS GLY PRO GLY VAL GLY LEU LEU GLY SEQRES 20 B 446 ILE SER LYS GLY GLY GLU LEU CYS LEU SER MSE ALA SER SEQRES 21 B 446 PHE LEU LYS GLY ILE THR ALA ALA VAL VAL ILE ASN GLY SEQRES 22 B 446 SER VAL ALA ASN VAL GLY GLY THR LEU ARG TYR LYS GLY SEQRES 23 B 446 GLU THR LEU PRO PRO VAL GLY VAL ASN ARG ASN ARG ILE SEQRES 24 B 446 LYS VAL THR LYS ASP GLY TYR ALA ASP ILE VAL ASP VAL SEQRES 25 B 446 LEU ASN SER PRO LEU GLU GLY PRO ASP GLN LYS SER PHE SEQRES 26 B 446 ILE PRO VAL GLU ARG ALA GLU SER THR PHE LEU PHE LEU SEQRES 27 B 446 VAL GLY GLN ASP ASP HIS ASN TRP LYS SER GLU PHE TYR SEQRES 28 B 446 ALA ASN GLU ALA CYS LYS ARG LEU GLN ALA HIS GLY ARG SEQRES 29 B 446 ARG LYS PRO GLN ILE ILE CYS TYR PRO GLU THR GLY HIS SEQRES 30 B 446 TYR ILE GLU PRO PRO TYR PHE PRO LEU CYS ARG ALA SER SEQRES 31 B 446 LEU HIS ALA LEU VAL GLY SER PRO ILE ILE TRP GLY GLY SEQRES 32 B 446 GLU PRO ARG ALA HIS ALA MSE ALA GLN VAL ASP ALA TRP SEQRES 33 B 446 LYS GLN LEU GLN THR PHE PHE HIS LYS HIS LEU GLY GLY SEQRES 34 B 446 HIS GLU GLY THR ILE PRO SER LYS VAL LEU GLU HIS HIS SEQRES 35 B 446 HIS HIS HIS HIS MODRES 3HLK MSE A 63 MET SELENOMETHIONINE MODRES 3HLK MSE A 140 MET SELENOMETHIONINE MODRES 3HLK MSE A 225 MET SELENOMETHIONINE MODRES 3HLK MSE A 248 MET SELENOMETHIONINE MODRES 3HLK MSE A 262 MET SELENOMETHIONINE MODRES 3HLK MSE A 274 MET SELENOMETHIONINE MODRES 3HLK MSE A 303 MET SELENOMETHIONINE MODRES 3HLK MSE A 455 MET SELENOMETHIONINE MODRES 3HLK MSE B 63 MET SELENOMETHIONINE MODRES 3HLK MSE B 140 MET SELENOMETHIONINE MODRES 3HLK MSE B 225 MET SELENOMETHIONINE MODRES 3HLK MSE B 248 MET SELENOMETHIONINE MODRES 3HLK MSE B 262 MET SELENOMETHIONINE MODRES 3HLK MSE B 274 MET SELENOMETHIONINE MODRES 3HLK MSE B 303 MET SELENOMETHIONINE MODRES 3HLK MSE B 455 MET SELENOMETHIONINE HET MSE A 63 8 HET MSE A 140 8 HET MSE A 225 8 HET MSE A 248 8 HET MSE A 262 8 HET MSE A 274 8 HET MSE A 303 8 HET MSE A 455 8 HET MSE B 63 8 HET MSE B 140 8 HET MSE B 225 8 HET MSE B 248 8 HET MSE B 262 8 HET MSE B 274 8 HET MSE B 303 8 HET MSE B 455 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 HOH *441(H2 O) HELIX 1 1 MSE A 140 ALA A 145 1 6 HELIX 2 2 GLU A 234 GLY A 242 1 9 HELIX 3 3 LEU A 267 SER A 279 1 13 HELIX 4 4 SER A 294 LEU A 307 1 14 HELIX 5 5 ASN A 340 ILE A 344 5 5 HELIX 6 6 GLU A 363 PHE A 370 5 8 HELIX 7 7 PRO A 372 ALA A 376 5 5 HELIX 8 8 LYS A 392 HIS A 407 1 16 HELIX 9 9 GLU A 449 LEU A 472 1 24 HELIX 10 10 MSE B 140 ALA B 145 1 6 HELIX 11 11 GLU B 234 GLY B 242 1 9 HELIX 12 12 LEU B 267 HIS B 280 1 14 HELIX 13 13 SER B 294 LEU B 307 1 14 HELIX 14 14 ASN B 340 ILE B 344 5 5 HELIX 15 15 GLU B 363 PHE B 370 5 8 HELIX 16 16 PRO B 372 ALA B 376 5 5 HELIX 17 17 LYS B 392 ALA B 406 1 15 HELIX 18 18 GLU B 449 LEU B 472 1 24 SHEET 1 A 3 THR A 66 GLU A 70 0 SHEET 2 A 3 ARG A 82 ARG A 86 -1 O ARG A 82 N GLU A 70 SHEET 3 A 3 LEU A 122 ASP A 123 -1 O LEU A 122 N VAL A 85 SHEET 1 B 6 CYS A 75 CYS A 76 0 SHEET 2 B 6 LEU A 181 TYR A 190 1 O TYR A 190 N CYS A 75 SHEET 3 B 6 LEU A 164 ASP A 172 -1 N VAL A 170 O LEU A 182 SHEET 4 B 6 PRO A 93 ARG A 101 -1 N THR A 95 O LEU A 171 SHEET 5 B 6 LEU A 107 ARG A 115 -1 O PHE A 108 N LEU A 100 SHEET 6 B 6 GLY A 131 GLY A 132 -1 O GLY A 131 N ARG A 113 SHEET 1 C 6 CYS A 75 CYS A 76 0 SHEET 2 C 6 LEU A 181 TYR A 190 1 O TYR A 190 N CYS A 75 SHEET 3 C 6 LEU A 164 ASP A 172 -1 N VAL A 170 O LEU A 182 SHEET 4 C 6 PRO A 93 ARG A 101 -1 N THR A 95 O LEU A 171 SHEET 5 C 6 LEU A 107 ARG A 115 -1 O PHE A 108 N LEU A 100 SHEET 6 C 6 GLU A 147 PRO A 148 -1 O GLU A 147 N GLN A 109 SHEET 1 D 8 ARG A 197 VAL A 203 0 SHEET 2 D 8 VAL A 206 LEU A 212 -1 O GLY A 208 N VAL A 201 SHEET 3 D 8 ALA A 246 LEU A 250 -1 O ALA A 249 N THR A 209 SHEET 4 D 8 GLY A 221 MSE A 225 1 N ASP A 224 O MSE A 248 SHEET 5 D 8 VAL A 288 ILE A 293 1 O LEU A 291 N VAL A 223 SHEET 6 D 8 ILE A 310 ILE A 316 1 O ILE A 316 N GLY A 292 SHEET 7 D 8 THR A 379 GLY A 385 1 O LEU A 383 N VAL A 315 SHEET 8 D 8 GLN A 413 TYR A 417 1 O ILE A 415 N PHE A 382 SHEET 1 E 3 THR A 264 HIS A 266 0 SHEET 2 E 3 THR A 326 TYR A 329 1 O THR A 326 N LEU A 265 SHEET 3 E 3 GLU A 332 LEU A 334 -1 O GLU A 332 N TYR A 329 SHEET 1 F 2 LYS A 345 VAL A 346 0 SHEET 2 F 2 ALA A 352 ASP A 353 -1 O ASP A 353 N LYS A 345 SHEET 1 G 3 THR B 66 GLU B 70 0 SHEET 2 G 3 ARG B 82 ARG B 86 -1 O ARG B 82 N GLU B 70 SHEET 3 G 3 LEU B 122 ASP B 123 -1 O LEU B 122 N VAL B 85 SHEET 1 H 7 CYS B 75 CYS B 76 0 SHEET 2 H 7 LEU B 181 TYR B 190 1 O TYR B 190 N CYS B 75 SHEET 3 H 7 LEU B 164 ASP B 172 -1 N VAL B 166 O HIS B 187 SHEET 4 H 7 PRO B 93 ARG B 101 -1 N THR B 95 O LEU B 171 SHEET 5 H 7 LEU B 107 ARG B 115 -1 O PHE B 108 N LEU B 100 SHEET 6 H 7 ALA B 129 GLY B 132 -1 O LEU B 130 N ARG B 113 SHEET 7 H 7 ALA B 135 GLY B 136 -1 O GLY B 136 N ALA B 129 SHEET 1 I 6 CYS B 75 CYS B 76 0 SHEET 2 I 6 LEU B 181 TYR B 190 1 O TYR B 190 N CYS B 75 SHEET 3 I 6 LEU B 164 ASP B 172 -1 N VAL B 166 O HIS B 187 SHEET 4 I 6 PRO B 93 ARG B 101 -1 N THR B 95 O LEU B 171 SHEET 5 I 6 LEU B 107 ARG B 115 -1 O PHE B 108 N LEU B 100 SHEET 6 I 6 GLU B 147 PRO B 148 -1 O GLU B 147 N GLN B 109 SHEET 1 J 8 ARG B 197 VAL B 203 0 SHEET 2 J 8 VAL B 206 LEU B 212 -1 O LEU B 212 N ARG B 197 SHEET 3 J 8 ALA B 246 LEU B 250 -1 O VAL B 247 N PHE B 211 SHEET 4 J 8 GLY B 221 MSE B 225 1 N ASP B 224 O LEU B 250 SHEET 5 J 8 VAL B 288 ILE B 293 1 O LEU B 291 N VAL B 223 SHEET 6 J 8 ILE B 310 ILE B 316 1 O ILE B 316 N GLY B 292 SHEET 7 J 8 THR B 379 GLY B 385 1 O LEU B 381 N VAL B 315 SHEET 8 J 8 GLN B 413 TYR B 417 1 O TYR B 417 N VAL B 384 SHEET 1 K 3 THR B 264 HIS B 266 0 SHEET 2 K 3 THR B 326 TYR B 329 1 O THR B 326 N LEU B 265 SHEET 3 K 3 GLU B 332 LEU B 334 -1 O GLU B 332 N TYR B 329 SHEET 1 L 2 LYS B 345 VAL B 346 0 SHEET 2 L 2 ALA B 352 ASP B 353 -1 O ASP B 353 N LYS B 345 SHEET 1 M 2 ALA B 434 SER B 435 0 SHEET 2 M 2 ILE B 444 ILE B 445 -1 O ILE B 444 N SER B 435 LINK C ARG A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N ALA A 64 1555 1555 1.33 LINK C PRO A 139 N MSE A 140 1555 1555 1.34 LINK C MSE A 140 N GLY A 141 1555 1555 1.33 LINK C ASP A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N PHE A 226 1555 1555 1.33 LINK C VAL A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N ALA A 249 1555 1555 1.33 LINK C THR A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N GLU A 263 1555 1555 1.34 LINK C ALA A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N ASN A 275 1555 1555 1.33 LINK C SER A 302 N MSE A 303 1555 1555 1.34 LINK C MSE A 303 N ALA A 304 1555 1555 1.33 LINK C ALA A 454 N MSE A 455 1555 1555 1.33 LINK C MSE A 455 N ALA A 456 1555 1555 1.34 LINK C ARG B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N ALA B 64 1555 1555 1.33 LINK C PRO B 139 N MSE B 140 1555 1555 1.34 LINK C MSE B 140 N GLY B 141 1555 1555 1.32 LINK C ASP B 224 N MSE B 225 1555 1555 1.33 LINK C MSE B 225 N PHE B 226 1555 1555 1.32 LINK C VAL B 247 N MSE B 248 1555 1555 1.33 LINK C MSE B 248 N ALA B 249 1555 1555 1.33 LINK C THR B 261 N MSE B 262 1555 1555 1.33 LINK C MSE B 262 N GLU B 263 1555 1555 1.33 LINK C ALA B 273 N MSE B 274 1555 1555 1.32 LINK C MSE B 274 N ASN B 275 1555 1555 1.33 LINK C SER B 302 N MSE B 303 1555 1555 1.33 LINK C MSE B 303 N ALA B 304 1555 1555 1.33 LINK C ALA B 454 N MSE B 455 1555 1555 1.34 LINK C MSE B 455 N ALA B 456 1555 1555 1.33 CISPEP 1 GLU A 70 PRO A 71 0 -3.17 CISPEP 2 GLU A 215 PRO A 216 0 2.89 CISPEP 3 GLY A 217 PRO A 218 0 0.88 CISPEP 4 GLY A 285 PRO A 286 0 9.22 CISPEP 5 THR A 347 LYS A 348 0 -12.17 CISPEP 6 GLU B 70 PRO B 71 0 -6.27 CISPEP 7 GLU B 215 PRO B 216 0 8.79 CISPEP 8 GLY B 217 PRO B 218 0 -3.67 CISPEP 9 GLY B 285 PRO B 286 0 0.40 CISPEP 10 THR B 347 LYS B 348 0 -11.98 CRYST1 124.557 124.557 131.950 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008028 0.004635 0.000000 0.00000 SCALE2 0.000000 0.009270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007579 0.00000