HEADER LIGASE 29-MAY-09 3HMQ TITLE 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A NAD SYNTHETASE (NADE) TITLE 2 FROM SALMONELLA TYPHIMURIUM LT2 IN COMPLEX WITH NAD(+) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: NADE, STM1310; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS NAD SYNTHETASE (NADE), STRUCTURAL GENOMICS, INFECTIOUS DISEASES, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, ATP-BINDING, KEYWDS 3 LIGASE, NAD, NUCLEOTIDE-BINDING, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON, AUTHOR 2 A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 5 31-JAN-18 3HMQ 1 JRNL REVDAT 4 01-NOV-17 3HMQ 1 REMARK REVDAT 3 07-DEC-11 3HMQ 1 AUTHOR REVDAT 2 13-JUL-11 3HMQ 1 VERSN REVDAT 1 16-JUN-09 3HMQ 0 JRNL AUTH A.S.HALAVATY,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A NAD JRNL TITL 2 SYNTHETASE (NADE) FROM SALMONELLA TYPHIMURIUM LT2 IN COMPLEX JRNL TITL 3 WITH NAD(+) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0051 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2044 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2325 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1573 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3169 ; 1.374 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3844 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 3.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;29.611 ;24.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ; 9.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.194 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2608 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 465 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1386 ; 0.698 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 565 ; 0.196 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2237 ; 1.220 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 939 ; 1.911 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 932 ; 3.056 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7282 53.0826 -2.5387 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0156 REMARK 3 T33: 0.0114 T12: -0.0158 REMARK 3 T13: -0.0055 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.2325 L22: 1.0209 REMARK 3 L33: 0.6046 L12: 0.2749 REMARK 3 L13: 0.1836 L23: -0.1128 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.1012 S13: 0.1142 REMARK 3 S21: -0.0922 S22: 0.0578 S23: 0.0117 REMARK 3 S31: -0.0867 S32: 0.0102 S33: 0.0091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5989 28.2114 -3.6946 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.1391 REMARK 3 T33: 0.1523 T12: -0.0364 REMARK 3 T13: 0.0393 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 1.2196 L22: 0.6495 REMARK 3 L33: 3.9856 L12: 0.2363 REMARK 3 L13: -0.8785 L23: -1.5901 REMARK 3 S TENSOR REMARK 3 S11: -0.1546 S12: 0.2417 S13: -0.3650 REMARK 3 S21: -0.3138 S22: -0.0069 S23: -0.0213 REMARK 3 S31: 0.7631 S32: 0.0158 S33: 0.1615 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7887 37.0250 1.0158 REMARK 3 T TENSOR REMARK 3 T11: 0.0309 T22: 0.0163 REMARK 3 T33: 0.0067 T12: -0.0102 REMARK 3 T13: 0.0068 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.6505 L22: 0.7793 REMARK 3 L33: 0.5900 L12: 0.3327 REMARK 3 L13: -0.2107 L23: -0.2621 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.0881 S13: -0.0652 REMARK 3 S21: -0.1420 S22: 0.0416 S23: -0.0278 REMARK 3 S31: 0.0868 S32: -0.0107 S33: 0.0278 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): -28.5802 37.0241 -14.9581 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.1935 REMARK 3 T33: 0.1266 T12: -0.0668 REMARK 3 T13: -0.0472 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 8.7199 L22: 0.9875 REMARK 3 L33: 0.6371 L12: 2.7970 REMARK 3 L13: -2.3244 L23: -0.7079 REMARK 3 S TENSOR REMARK 3 S11: -0.2710 S12: 0.4064 S13: -0.0989 REMARK 3 S21: -0.1680 S22: 0.2297 S23: 0.0324 REMARK 3 S31: 0.0477 S32: -0.0556 S33: 0.0412 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 229 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7536 44.9840 2.6192 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0385 REMARK 3 T33: 0.0916 T12: -0.0067 REMARK 3 T13: -0.0386 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.5685 L22: 0.4847 REMARK 3 L33: 2.2913 L12: 0.2170 REMARK 3 L13: 0.0647 L23: 0.0398 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.0429 S13: 0.1164 REMARK 3 S21: -0.0902 S22: 0.0597 S23: 0.2086 REMARK 3 S31: -0.0618 S32: -0.2457 S33: -0.0144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BE LENSES/DIAMOND LAUE MONO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: STRUCTURE SOLUTION CRANK (SHELXC, SHELXD, BP3, REMARK 200 SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN 300MM NACL, 10MM HEPES NA REMARK 280 PH 7.5, 0.5MM TCEP WAS MIXED AT 1:1 V/V RATIO WITH NH4SULPHAT 2M, REMARK 280 BIS-TRIS 0.1M PH 5.5, 10MM NAD-MAGIC SOLUTION, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.01667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.03333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.03333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.01667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -253.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 25.01667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 209 REMARK 465 PRO A 210 REMARK 465 THR A 211 REMARK 465 ALA A 212 REMARK 465 ASP A 213 REMARK 465 LEU A 214 REMARK 465 GLU A 215 REMARK 465 ASP A 216 REMARK 465 ASP A 217 REMARK 465 ARG A 218 REMARK 465 PRO A 219 REMARK 465 SER A 220 REMARK 465 LEU A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 88 59.22 -111.13 REMARK 500 ALA A 89 -159.43 62.33 REMARK 500 ALA A 89 -160.80 62.33 REMARK 500 ARG A 186 -28.42 119.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00960 RELATED DB: TARGETDB DBREF 3HMQ A 1 275 UNP Q8ZPU5 NADE_SALTY 1 275 SEQRES 1 A 275 MSE THR LEU GLN GLN GLU ILE ILE GLN ALA LEU GLY ALA SEQRES 2 A 275 LYS PRO HIS ILE ASN PRO GLU GLU GLU ILE ARG ARG SER SEQRES 3 A 275 VAL ASP PHE LEU LYS ALA TYR LEU LYS THR TYR PRO PHE SEQRES 4 A 275 LEU LYS SER LEU VAL LEU GLY ILE SER GLY GLY GLN ASP SEQRES 5 A 275 SER THR LEU ALA GLY LYS LEU SER GLN MSE ALA ILE ALA SEQRES 6 A 275 GLU LEU ARG GLU GLU THR GLY ASP ASN ALA LEU GLN PHE SEQRES 7 A 275 ILE ALA VAL ARG LEU PRO TYR GLY VAL GLN ALA ASP GLU SEQRES 8 A 275 GLN ASP CYS GLN ASP ALA ILE ALA PHE ILE GLN PRO ASP SEQRES 9 A 275 ARG VAL LEU THR VAL ASN ILE LYS GLY ALA VAL LEU ALA SEQRES 10 A 275 SER GLU GLN ALA LEU ARG GLU ALA GLY ILE GLU LEU SER SEQRES 11 A 275 ASP PHE VAL ARG GLY ASN GLU LYS ALA ARG GLU ARG MSE SEQRES 12 A 275 LYS ALA GLN TYR SER ILE ALA GLY MSE THR HIS GLY VAL SEQRES 13 A 275 VAL VAL GLY THR ASP HIS ALA ALA GLU ALA ILE THR GLY SEQRES 14 A 275 PHE PHE THR LYS TYR GLY ASP GLY GLY THR ASP ILE ASN SEQRES 15 A 275 PRO LEU HIS ARG LEU ASN LYS ARG GLN GLY LYS GLN LEU SEQRES 16 A 275 LEU ALA ALA LEU GLY CYS PRO GLU HIS LEU TYR LYS LYS SEQRES 17 A 275 VAL PRO THR ALA ASP LEU GLU ASP ASP ARG PRO SER LEU SEQRES 18 A 275 PRO ASP GLU ALA ALA LEU GLY VAL THR TYR ASP ASN ILE SEQRES 19 A 275 ASP ASP TYR LEU GLU GLY LYS THR LEU ASP PRO ALA ILE SEQRES 20 A 275 ALA LYS THR ILE GLU GLY TRP TYR VAL LYS THR GLU HIS SEQRES 21 A 275 LYS ARG ARG LEU PRO ILE THR VAL PHE ASP ASP PHE TRP SEQRES 22 A 275 LYS ARG MODRES 3HMQ MSE A 1 MET SELENOMETHIONINE MODRES 3HMQ MSE A 62 MET SELENOMETHIONINE MODRES 3HMQ MSE A 143 MET SELENOMETHIONINE MODRES 3HMQ MSE A 152 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 62 8 HET MSE A 143 8 HET MSE A 152 8 HET SO4 A 276 5 HET SO4 A 277 5 HET SO4 A 278 5 HET SO4 A 279 5 HET SO4 A 280 5 HET SO4 A 281 5 HET SO4 A 282 5 HET SO4 A 283 5 HET NAD A 300 44 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 8(O4 S 2-) FORMUL 10 NAD C21 H27 N7 O14 P2 FORMUL 11 HOH *432(H2 O) HELIX 1 1 THR A 2 GLY A 12 1 11 HELIX 2 2 ASN A 18 TYR A 37 1 20 HELIX 3 3 GLY A 50 GLY A 72 1 23 HELIX 4 4 GLU A 91 GLN A 102 1 12 HELIX 5 5 ILE A 111 ALA A 125 1 15 HELIX 6 6 SER A 130 THR A 153 1 24 HELIX 7 7 HIS A 162 ILE A 167 1 6 HELIX 8 8 ASN A 188 GLY A 200 1 13 HELIX 9 9 PRO A 202 TYR A 206 5 5 HELIX 10 10 THR A 230 GLU A 239 1 10 HELIX 11 11 ASP A 244 THR A 258 1 15 HELIX 12 12 GLU A 259 ARG A 263 5 5 SHEET 1 A 4 ARG A 105 THR A 108 0 SHEET 2 A 4 GLN A 77 ARG A 82 1 N ARG A 82 O LEU A 107 SHEET 3 A 4 SER A 42 ILE A 47 1 N LEU A 43 O ILE A 79 SHEET 4 A 4 GLY A 155 VAL A 157 1 O VAL A 156 N VAL A 44 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C GLN A 61 N MSE A 62 1555 1555 1.34 LINK C MSE A 62 N ALA A 63 1555 1555 1.34 LINK C ARG A 142 N MSE A 143 1555 1555 1.34 LINK C MSE A 143 N ALYS A 144 1555 1555 1.34 LINK C MSE A 143 N BLYS A 144 1555 1555 1.33 LINK C GLY A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N THR A 153 1555 1555 1.33 SITE 1 AC1 9 SER A 48 GLY A 50 ASP A 52 SER A 53 SITE 2 AC1 9 HOH A 385 HOH A 483 HOH A 547 HOH A 552 SITE 3 AC1 9 HOH A 610 SITE 1 AC2 5 TYR A 85 LYS A 138 ARG A 142 HOH A 523 SITE 2 AC2 5 HOH A 638 SITE 1 AC3 6 GLY A 50 GLN A 51 LYS A 189 HOH A 425 SITE 2 AC3 6 HOH A 446 HOH A 547 SITE 1 AC4 6 TYR A 85 ARG A 134 LYS A 138 HOH A 292 SITE 2 AC4 6 HOH A 452 HOH A 475 SITE 1 AC5 3 NAD A 300 HOH A 549 HOH A 704 SITE 1 AC6 4 ASP A 271 PHE A 272 HOH A 461 HOH A 522 SITE 1 AC7 4 GLY A 86 VAL A 87 LYS A 112 HOH A 497 SITE 1 AC8 4 THR A 2 LEU A 3 HOH A 519 HOH A 686 SITE 1 AC9 30 TYR A 33 GLU A 70 PHE A 132 ASN A 136 SITE 2 AC9 30 ARG A 140 TYR A 147 ALA A 150 GLY A 151 SITE 3 AC9 30 GLY A 155 VAL A 156 PHE A 170 PHE A 171 SITE 4 AC9 30 THR A 172 LYS A 173 ASP A 180 ALA A 225 SITE 5 AC9 30 TRP A 254 HIS A 260 LYS A 261 SO4 A 280 SITE 6 AC9 30 HOH A 337 HOH A 438 HOH A 508 HOH A 565 SITE 7 AC9 30 HOH A 586 HOH A 628 HOH A 655 HOH A 665 SITE 8 AC9 30 HOH A 672 HOH A 684 CRYST1 91.820 91.820 75.050 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010891 0.006288 0.000000 0.00000 SCALE2 0.000000 0.012576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013324 0.00000 HETATM 1 N MSE A 1 -48.177 58.198 1.302 1.00 39.00 N HETATM 2 CA MSE A 1 -46.991 57.546 0.669 1.00 39.09 C HETATM 3 C MSE A 1 -47.276 56.054 0.501 1.00 36.90 C HETATM 4 O MSE A 1 -47.712 55.398 1.442 1.00 37.09 O HETATM 5 CB MSE A 1 -45.740 57.776 1.530 1.00 40.45 C HETATM 6 CG MSE A 1 -44.430 57.371 0.879 1.00 45.20 C HETATM 7 SE MSE A 1 -42.816 58.124 1.739 1.00 57.10 SE HETATM 8 CE MSE A 1 -43.132 60.012 1.385 1.00 54.19 C