HEADER HYDROLASE 03-JUN-09 3HP9 TITLE CRYSTAL STRUCTURE OF SSB/EXONUCLEASE I IN COMPLEX WITH INHIBITOR CFAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXODEOXYRIBONUCLEASE I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXONUCLEASE I, DNA DEOXYRIBOPHOSPHODIESTERASE, DRPASE; COMPND 5 EC: 3.1.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B2011, CPEA, JW1993, SBCB, XONA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS EXONUCLEASE, SSB, GENOME MAINTENANCE, DNA DAMAGE, DNA REPAIR, KEYWDS 2 HYDROLASE, NUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.SATYSHUR REVDAT 5 06-SEP-23 3HP9 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3HP9 1 REMARK REVDAT 3 13-JUL-11 3HP9 1 VERSN REVDAT 2 02-FEB-10 3HP9 1 JRNL REVDAT 1 19-JAN-10 3HP9 0 JRNL AUTH D.LU,D.A.BERNSTEIN,K.A.SATYSHUR,J.L.KECK JRNL TITL SMALL-MOLECULE TOOLS FOR DISSECTING THE ROLES OF SSB/PROTEIN JRNL TITL 2 INTERACTIONS IN GENOME MAINTENANCE JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 633 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20018747 JRNL DOI 10.1073/PNAS.0909191107 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 55230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3929 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5371 ; 0.841 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 5.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;33.834 ;24.067 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;12.595 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3097 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2339 ; 0.482 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3807 ; 0.916 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 1.515 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1547 ; 2.561 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5947 26.0595 23.0085 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0706 REMARK 3 T33: 0.0683 T12: -0.0061 REMARK 3 T13: 0.0067 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.8128 L22: 0.4369 REMARK 3 L33: 0.4871 L12: -0.1584 REMARK 3 L13: 0.3054 L23: -0.0563 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0406 S13: -0.0293 REMARK 3 S21: -0.0124 S22: -0.0060 S23: -0.0166 REMARK 3 S31: 0.0286 S32: 0.0319 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8425 25.6756 46.1082 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0737 REMARK 3 T33: 0.0833 T12: -0.0041 REMARK 3 T13: -0.0033 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.9874 L22: 0.8784 REMARK 3 L33: 0.9432 L12: -0.2629 REMARK 3 L13: -0.5242 L23: 0.1007 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.0034 S13: 0.0942 REMARK 3 S21: -0.0109 S22: -0.0212 S23: 0.0082 REMARK 3 S31: -0.1062 S32: -0.0441 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2796 31.9526 35.5607 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.1004 REMARK 3 T33: 0.1050 T12: -0.0057 REMARK 3 T13: 0.0062 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.6249 L22: 1.7722 REMARK 3 L33: 4.1977 L12: -0.4974 REMARK 3 L13: 1.9389 L23: -2.0467 REMARK 3 S TENSOR REMARK 3 S11: -0.1284 S12: -0.1117 S13: 0.3494 REMARK 3 S21: 0.2000 S22: 0.0693 S23: -0.0095 REMARK 3 S31: -0.4337 S32: -0.2086 S33: 0.0591 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7535 7.2085 43.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.0811 REMARK 3 T33: 0.0894 T12: 0.0099 REMARK 3 T13: -0.0091 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.4617 L22: 1.0459 REMARK 3 L33: 0.7317 L12: 0.1130 REMARK 3 L13: -0.1574 L23: 0.0799 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.0636 S13: -0.1247 REMARK 3 S21: -0.0376 S22: 0.0007 S23: 0.0754 REMARK 3 S31: 0.1072 S32: -0.0927 S33: 0.0237 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 272 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3637 2.0494 45.3674 REMARK 3 T TENSOR REMARK 3 T11: 0.2546 T22: 0.3531 REMARK 3 T33: 0.3738 T12: 0.0110 REMARK 3 T13: 0.0166 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.1686 L22: 1.3953 REMARK 3 L33: 3.2384 L12: -0.6932 REMARK 3 L13: 1.2835 L23: -0.8808 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.2974 S13: 0.3542 REMARK 3 S21: -0.2348 S22: -0.0641 S23: 0.1311 REMARK 3 S31: -0.4529 S32: -0.1383 S33: 0.0881 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6810 7.1438 50.6918 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.0757 REMARK 3 T33: 0.1049 T12: 0.0105 REMARK 3 T13: 0.0006 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4582 L22: 0.6705 REMARK 3 L33: 0.9654 L12: 0.2199 REMARK 3 L13: -0.2066 L23: -0.0723 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0582 S13: -0.0449 REMARK 3 S21: 0.0526 S22: -0.0203 S23: 0.0973 REMARK 3 S31: 0.0502 S32: -0.0916 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6631 -4.9533 43.5018 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1968 REMARK 3 T33: 0.2613 T12: -0.0909 REMARK 3 T13: -0.0131 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 3.3440 L22: 2.7817 REMARK 3 L33: 3.8073 L12: -1.4805 REMARK 3 L13: 0.4118 L23: -2.3887 REMARK 3 S TENSOR REMARK 3 S11: 0.0885 S12: 0.2680 S13: 0.0383 REMARK 3 S21: -0.2124 S22: -0.0021 S23: 0.3434 REMARK 3 S31: 0.5357 S32: -0.5433 S33: -0.0864 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 360 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5109 15.1943 11.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.1113 REMARK 3 T33: 0.1203 T12: -0.0076 REMARK 3 T13: -0.0180 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.7098 L22: 0.9774 REMARK 3 L33: 2.4011 L12: -0.1027 REMARK 3 L13: -1.0721 L23: 0.7619 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: 0.0866 S13: -0.0751 REMARK 3 S21: -0.0212 S22: 0.0366 S23: 0.0218 REMARK 3 S31: 0.1141 S32: -0.0085 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 393 A 431 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6998 22.6622 7.6342 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.1204 REMARK 3 T33: 0.0913 T12: -0.0082 REMARK 3 T13: -0.0035 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.6642 L22: 1.0741 REMARK 3 L33: 1.6998 L12: 0.3032 REMARK 3 L13: 0.5679 L23: -0.7105 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.1618 S13: -0.1394 REMARK 3 S21: -0.1545 S22: -0.0388 S23: 0.0173 REMARK 3 S31: 0.1175 S32: -0.0171 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 475 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3546 42.0170 28.9273 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.0941 REMARK 3 T33: 0.1021 T12: 0.0204 REMARK 3 T13: 0.0062 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.2228 L22: 1.5509 REMARK 3 L33: 1.4383 L12: 0.3961 REMARK 3 L13: -0.0237 L23: 0.3586 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0155 S13: 0.0486 REMARK 3 S21: -0.0037 S22: -0.0315 S23: 0.0649 REMARK 3 S31: -0.1022 S32: -0.0901 S33: 0.0327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97869 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3C95 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML PROTEIN, 18-27% PEG 4000, REMARK 280 SATURATED INHIBITOR IN DMSO SOAKED 4-5 DAYS, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.33550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.54050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.96950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.54050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.33550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.96950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 179 REMARK 465 ALA A 180 REMARK 465 HIS A 181 REMARK 465 THR A 285 REMARK 465 ALA A 286 REMARK 465 LYS A 287 REMARK 465 THR A 288 REMARK 465 ASP A 289 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 ASP A 292 REMARK 465 ALA A 354 REMARK 465 GLU A 355 REMARK 465 PRO A 356 REMARK 465 PHE A 357 REMARK 465 THR A 358 REMARK 465 PRO A 359 REMARK 465 GLU A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 577 O HOH A 935 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 107 -74.19 -114.35 REMARK 500 CYS A 306 59.22 32.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD1 REMARK 620 2 HOH A 514 O 91.0 REMARK 620 3 HOH A 515 O 89.2 178.9 REMARK 620 4 HOH A 516 O 89.4 92.8 88.2 REMARK 620 5 HOH A 517 O 177.3 91.6 88.2 91.2 REMARK 620 6 HOH A 518 O 86.4 86.1 92.9 175.6 93.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CF1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C95 RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3C94 RELATED DB: PDB REMARK 900 PEPTIDE BOUND IN TWO SITES REMARK 900 RELATED ID: 3HL8 RELATED DB: PDB REMARK 900 INHIBITOR BOUND: (5R)-3-TERT-BUTYL-1-(6-CHLORO-1,3-BENZOTHIAZOL-2- REMARK 900 YL)-4,5-DIHYDRO-1H-PYRAZOL-5-OL (ZINC00107052) DBREF 3HP9 A 1 475 UNP P04995 EX1_ECOLI 1 475 SEQADV 3HP9 ASP A 472 UNP P04995 GLU 472 CONFLICT SEQADV 3HP9 GLU A 476 UNP P04995 EXPRESSION TAG SEQADV 3HP9 HIS A 477 UNP P04995 EXPRESSION TAG SEQADV 3HP9 HIS A 478 UNP P04995 EXPRESSION TAG SEQADV 3HP9 HIS A 479 UNP P04995 EXPRESSION TAG SEQADV 3HP9 HIS A 480 UNP P04995 EXPRESSION TAG SEQADV 3HP9 HIS A 481 UNP P04995 EXPRESSION TAG SEQADV 3HP9 HIS A 482 UNP P04995 EXPRESSION TAG SEQRES 1 A 482 MET MET ASN ASP GLY LYS GLN GLN SER THR PHE LEU PHE SEQRES 2 A 482 HIS ASP TYR GLU THR PHE GLY THR HIS PRO ALA LEU ASP SEQRES 3 A 482 ARG PRO ALA GLN PHE ALA ALA ILE ARG THR ASP SER GLU SEQRES 4 A 482 PHE ASN VAL ILE GLY GLU PRO GLU VAL PHE TYR CYS LYS SEQRES 5 A 482 PRO ALA ASP ASP TYR LEU PRO GLN PRO GLY ALA VAL LEU SEQRES 6 A 482 ILE THR GLY ILE THR PRO GLN GLU ALA ARG ALA LYS GLY SEQRES 7 A 482 GLU ASN GLU ALA ALA PHE ALA ALA ARG ILE HIS SER LEU SEQRES 8 A 482 PHE THR VAL PRO LYS THR CYS ILE LEU GLY TYR ASN ASN SEQRES 9 A 482 VAL ARG PHE ASP ASP GLU VAL THR ARG ASN ILE PHE TYR SEQRES 10 A 482 ARG ASN PHE TYR ASP PRO TYR ALA TRP SER TRP GLN HIS SEQRES 11 A 482 ASP ASN SER ARG TRP ASP LEU LEU ASP VAL MET ARG ALA SEQRES 12 A 482 CYS TYR ALA LEU ARG PRO GLU GLY ILE ASN TRP PRO GLU SEQRES 13 A 482 ASN ASP ASP GLY LEU PRO SER PHE ARG LEU GLU HIS LEU SEQRES 14 A 482 THR LYS ALA ASN GLY ILE GLU HIS SER ASN ALA HIS ASP SEQRES 15 A 482 ALA MET ALA ASP VAL TYR ALA THR ILE ALA MET ALA LYS SEQRES 16 A 482 LEU VAL LYS THR ARG GLN PRO ARG LEU PHE ASP TYR LEU SEQRES 17 A 482 PHE THR HIS ARG ASN LYS HIS LYS LEU MET ALA LEU ILE SEQRES 18 A 482 ASP VAL PRO GLN MET LYS PRO LEU VAL HIS VAL SER GLY SEQRES 19 A 482 MET PHE GLY ALA TRP ARG GLY ASN THR SER TRP VAL ALA SEQRES 20 A 482 PRO LEU ALA TRP HIS PRO GLU ASN ARG ASN ALA VAL ILE SEQRES 21 A 482 MET VAL ASP LEU ALA GLY ASP ILE SER PRO LEU LEU GLU SEQRES 22 A 482 LEU ASP SER ASP THR LEU ARG GLU ARG LEU TYR THR ALA SEQRES 23 A 482 LYS THR ASP LEU GLY ASP ASN ALA ALA VAL PRO VAL LYS SEQRES 24 A 482 LEU VAL HIS ILE ASN LYS CYS PRO VAL LEU ALA GLN ALA SEQRES 25 A 482 ASN THR LEU ARG PRO GLU ASP ALA ASP ARG LEU GLY ILE SEQRES 26 A 482 ASN ARG GLN HIS CYS LEU ASP ASN LEU LYS ILE LEU ARG SEQRES 27 A 482 GLU ASN PRO GLN VAL ARG GLU LYS VAL VAL ALA ILE PHE SEQRES 28 A 482 ALA GLU ALA GLU PRO PHE THR PRO SER ASP ASN VAL ASP SEQRES 29 A 482 ALA GLN LEU TYR ASN GLY PHE PHE SER ASP ALA ASP ARG SEQRES 30 A 482 ALA ALA MET LYS ILE VAL LEU GLU THR GLU PRO ARG ASN SEQRES 31 A 482 LEU PRO ALA LEU ASP ILE THR PHE VAL ASP LYS ARG ILE SEQRES 32 A 482 GLU LYS LEU LEU PHE ASN TYR ARG ALA ARG ASN PHE PRO SEQRES 33 A 482 GLY THR LEU ASP TYR ALA GLU GLN GLN ARG TRP LEU GLU SEQRES 34 A 482 HIS ARG ARG GLN VAL PHE THR PRO GLU PHE LEU GLN GLY SEQRES 35 A 482 TYR ALA ASP GLU LEU GLN MET LEU VAL GLN GLN TYR ALA SEQRES 36 A 482 ASP ASP LYS GLU LYS VAL ALA LEU LEU LYS ALA LEU TRP SEQRES 37 A 482 GLN TYR ALA ASP GLU ILE VAL GLU HIS HIS HIS HIS HIS SEQRES 38 A 482 HIS HET MG A 500 1 HET CF1 A 501 23 HET DMS A 502 4 HET DMS A 503 4 HET DMS A 504 4 HET DMS A 505 4 HET DMS A 506 4 HET EDO A 507 4 HETNAM MG MAGNESIUM ION HETNAM CF1 2-{[2-CHLORO-5-(TRIFLUOROMETHYL)PHENYL]AMINO}-5- HETNAM 2 CF1 METHOXYBENZOIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 CF1 C15 H11 CL F3 N O3 FORMUL 4 DMS 5(C2 H6 O S) FORMUL 9 EDO C2 H6 O2 FORMUL 10 HOH *448(H2 O) HELIX 1 1 GLN A 60 GLY A 68 1 9 HELIX 2 2 THR A 70 GLY A 78 1 9 HELIX 3 3 ASN A 80 THR A 93 1 14 HELIX 4 4 PHE A 107 ASN A 119 1 13 HELIX 5 5 TYR A 124 ASN A 132 5 9 HELIX 6 6 LEU A 137 ARG A 148 1 12 HELIX 7 7 ARG A 165 ASN A 173 1 9 HELIX 8 8 MET A 184 GLN A 201 1 18 HELIX 9 9 GLN A 201 HIS A 211 1 11 HELIX 10 10 ASN A 213 ALA A 219 1 7 HELIX 11 11 GLY A 234 GLY A 241 5 8 HELIX 12 12 ILE A 268 LEU A 274 1 7 HELIX 13 13 ASP A 275 TYR A 284 1 10 HELIX 14 14 ASN A 313 LEU A 315 5 3 HELIX 15 15 ARG A 316 GLY A 324 1 9 HELIX 16 16 ASN A 326 ASN A 340 1 15 HELIX 17 17 PRO A 341 GLU A 353 1 13 HELIX 18 18 ASN A 362 GLN A 366 5 5 HELIX 19 19 SER A 373 THR A 386 1 14 HELIX 20 20 GLU A 387 LEU A 391 5 5 HELIX 21 21 LYS A 401 PHE A 415 1 15 HELIX 22 22 PRO A 416 LEU A 419 5 4 HELIX 23 23 ASP A 420 PHE A 435 1 16 HELIX 24 24 THR A 436 TYR A 454 1 19 HELIX 25 25 ASP A 457 VAL A 475 1 19 SHEET 1 A 5 GLU A 47 TYR A 50 0 SHEET 2 A 5 PRO A 28 THR A 36 -1 N ALA A 33 O GLU A 47 SHEET 3 A 5 THR A 10 THR A 18 -1 N GLU A 17 O ALA A 29 SHEET 4 A 5 THR A 97 GLY A 101 1 O CYS A 98 N LEU A 12 SHEET 5 A 5 SER A 133 ASP A 136 1 O SER A 133 N ILE A 99 SHEET 1 B 5 VAL A 298 HIS A 302 0 SHEET 2 B 5 ALA A 258 ASP A 263 -1 N MET A 261 O LYS A 299 SHEET 3 B 5 THR A 243 TRP A 251 -1 N ALA A 250 O ILE A 260 SHEET 4 B 5 LEU A 229 VAL A 232 -1 N LEU A 229 O VAL A 246 SHEET 5 B 5 VAL A 308 GLN A 311 -1 O ALA A 310 N VAL A 230 LINK OD1 ASP A 15 MG MG A 500 1555 1555 2.10 LINK MG MG A 500 O HOH A 514 1555 1555 2.05 LINK MG MG A 500 O HOH A 515 1555 1555 2.08 LINK MG MG A 500 O HOH A 516 1555 1555 2.20 LINK MG MG A 500 O HOH A 517 1555 1555 2.03 LINK MG MG A 500 O HOH A 518 1555 1555 2.02 SITE 1 AC1 6 ASP A 15 HOH A 514 HOH A 515 HOH A 516 SITE 2 AC1 6 HOH A 517 HOH A 518 SITE 1 AC2 12 PRO A 228 TRP A 245 LEU A 264 ALA A 312 SITE 2 AC2 12 ASN A 313 ARG A 327 CYS A 330 LEU A 331 SITE 3 AC2 12 LEU A 334 ARG A 338 HOH A 532 HOH A 801 SITE 1 AC3 6 TYR A 145 ALA A 238 TRP A 239 GLY A 241 SITE 2 AC3 6 ARG A 322 LEU A 323 SITE 1 AC4 3 ARG A 327 GLN A 452 GLN A 453 SITE 1 AC5 8 GLU A 17 THR A 18 GLY A 20 ALA A 63 SITE 2 AC5 8 THR A 67 PHE A 107 HOH A 769 HOH A 885 SITE 1 AC6 2 SER A 38 LYS A 198 SITE 1 AC7 2 ASN A 103 PHE A 164 SITE 1 AC8 3 ARG A 203 LEU A 204 HOH A 616 CRYST1 52.671 91.939 103.081 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009701 0.00000