HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JUN-09 3HRP TITLE CRYSTAL STRUCTURE OF STRUCTURAL GENOMICS PROTEIN OF UNKNOWN FUNCTION TITLE 2 (NP_812590.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.70 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 23-430; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_3679, NP_812590.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_812590.1, STRUCTURAL GENOMICS PROTEIN OF UNKNOWN FUNCTION, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3HRP 1 REMARK SEQADV REVDAT 5 24-JUL-19 3HRP 1 REMARK LINK REVDAT 4 25-OCT-17 3HRP 1 REMARK REVDAT 3 13-JUL-11 3HRP 1 VERSN REVDAT 2 24-NOV-09 3HRP 1 JRNL TITLE SOURCE REVDAT 1 04-AUG-09 3HRP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF STRUCTURAL GENOMICS PROTEIN OF UNKNOWN JRNL TITL 2 FUNCTION (NP_812590.1) FROM BACTEROIDES THETAIOTAOMICRON JRNL TITL 3 VPI-5482 AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 45441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.164 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3363 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2295 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4563 ; 1.279 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5612 ; 0.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 6.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.843 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;11.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.402 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 492 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3802 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 681 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2049 ; 0.532 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 850 ; 0.167 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3326 ; 0.880 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1314 ; 1.637 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1222 ; 2.498 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 59.4980 -14.6780 -2.1160 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.1635 REMARK 3 T33: 0.1124 T12: 0.0350 REMARK 3 T13: -0.0001 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.1171 L22: 1.9733 REMARK 3 L33: 6.0390 L12: -0.4013 REMARK 3 L13: 0.7732 L23: -2.0997 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.0147 S13: 0.0071 REMARK 3 S21: -0.0993 S22: -0.0599 S23: -0.0780 REMARK 3 S31: 0.3004 S32: 0.3021 S33: 0.0474 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 52.2210 -8.9140 6.2710 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.1149 REMARK 3 T33: 0.0960 T12: 0.0243 REMARK 3 T13: -0.0076 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.2025 L22: 0.9668 REMARK 3 L33: 3.0658 L12: -0.6789 REMARK 3 L13: -1.2261 L23: 0.8116 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: -0.1369 S13: 0.0796 REMARK 3 S21: 0.1347 S22: 0.0891 S23: 0.0140 REMARK 3 S31: 0.0390 S32: 0.1251 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0790 11.9150 18.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.0586 REMARK 3 T33: 0.0385 T12: 0.0004 REMARK 3 T13: -0.0064 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6309 L22: 2.1444 REMARK 3 L33: 1.4773 L12: 0.1693 REMARK 3 L13: 0.2370 L23: 0.6831 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.0360 S13: 0.0296 REMARK 3 S21: -0.3967 S22: 0.0007 S23: 0.0360 REMARK 3 S31: -0.2389 S32: 0.0424 S33: 0.0283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 A MPD PLUS 15 EDO'S FROM THE CRYSTALLIZATION CONDITIONS HAVE REMARK 3 BEEN MODELED IN THE STRUCTURE. 5. 8 N-TERMINAL RESIDUES WITHIN REMARK 3 THE STRUCTURE ARE DISODERED. 6. ADDITIONAL DENSITY ADJACENT TO REMARK 3 GLU76 WAS MODELED AS 2 WATERS BUT COULD ALSO BE DUE TO REMARK 3 POSTTRANSLATIONAL MODIFICATION OF THAT RESIDUE. REMARK 4 REMARK 4 3HRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.64 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97889,0.97824 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR MAR325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45480 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.050 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT REMARK 200 AS SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32.0000% 2-METHYL-2,4-PENTANEDIOL, REMARK 280 0.2000M MAGNESIUM CHLORIDE, 0.1M IMIDAZOLE PH 7.64, VAPOR REMARK 280 DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.55200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.16350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.45750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.16350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.55200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.45750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). ANALYTICAL SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY PROVIDES SUPPORTING EVIDENCE THAT THE MONOMER IS THE REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 23 REMARK 465 ASP A 24 REMARK 465 ASP A 25 REMARK 465 ASN A 26 REMARK 465 LYS A 27 REMARK 465 THR A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 42 CD OE1 OE2 REMARK 470 LYS A 201 CD CE NZ REMARK 470 LYS A 364 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 320 O HOH A 661 2.08 REMARK 500 OG1 THR A 216 O2 EDO A 15 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 155 14.91 -146.43 REMARK 500 HIS A 189 79.84 -150.21 REMARK 500 LYS A 261 11.10 81.77 REMARK 500 GLN A 345 83.34 -156.19 REMARK 500 ASN A 347 -127.53 -110.50 REMARK 500 SER A 389 -169.84 -160.84 REMARK 500 ALA A 419 -89.06 -82.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 15 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 392959 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-430 REMARK 999 OF THE TARGET SEQUENCE. DBREF 3HRP A 23 430 UNP Q8A1I2 Q8A1I2_BACTN 23 430 SEQADV 3HRP GLY A 0 UNP Q8A1I2 EXPRESSION TAG SEQRES 1 A 409 GLY SER ASP ASP ASN LYS THR THR GLY ALA THR TYR ASP SEQRES 2 A 409 PRO ASN GLN PRO VAL THR VAL GLU SER PHE MSE PRO VAL SEQRES 3 A 409 GLU GLY LYS LEU ARG GLU LYS VAL ILE VAL LYS GLY SER SEQRES 4 A 409 ASN PHE GLY THR ASP LYS SER LYS VAL LYS VAL TYR PHE SEQRES 5 A 409 VAL ASP GLU ALA ALA GLU ARG LEU SER THR VAL ILE GLY SEQRES 6 A 409 ILE ASP ASN ASN THR LEU TYR CYS LEU ALA PRO ARG GLN SEQRES 7 A 409 LEU PRO GLY GLY ASN ARG ILE LYS VAL ILE VAL ASP GLY SEQRES 8 A 409 LYS GLU VAL THR THR ASP GLY THR PHE LYS TYR GLU GLN SEQRES 9 A 409 ALA GLN ASN VAL SER THR ILE SER GLY SER ALA SER LYS SEQRES 10 A 409 ASP GLY ASN ASP ASP GLY ASP LEU ALA SER ALA LYS PHE SEQRES 11 A 409 LYS TYR MSE TRP GLY ILE ALA ALA VAL GLY ASN ASN THR SEQRES 12 A 409 VAL LEU ALA TYR GLN ARG ASP ASP PRO ARG VAL ARG LEU SEQRES 13 A 409 ILE SER VAL ASP ASP ASN LYS VAL THR THR VAL HIS PRO SEQRES 14 A 409 GLY PHE LYS GLY GLY LYS PRO ALA VAL THR LYS ASP LYS SEQRES 15 A 409 GLN ARG VAL TYR SER ILE GLY TRP GLU GLY THR HIS THR SEQRES 16 A 409 VAL TYR VAL TYR MSE LYS ALA SER GLY TRP ALA PRO THR SEQRES 17 A 409 ARG ILE GLY GLN LEU GLY SER THR PHE SER GLY LYS ILE SEQRES 18 A 409 GLY ALA VAL ALA LEU ASP GLU THR GLU GLU TRP LEU TYR SEQRES 19 A 409 PHE VAL ASP SER ASN LYS ASN PHE GLY ARG PHE ASN VAL SEQRES 20 A 409 LYS THR GLN GLU VAL THR LEU ILE LYS GLN LEU GLU LEU SEQRES 21 A 409 SER GLY SER LEU GLY THR ASN PRO GLY PRO TYR LEU ILE SEQRES 22 A 409 TYR TYR PHE VAL ASP SER ASN PHE TYR MSE SER ASP GLN SEQRES 23 A 409 ASN LEU SER SER VAL TYR LYS ILE THR PRO ASP GLY GLU SEQRES 24 A 409 CYS GLU TRP PHE CYS GLY SER ALA THR GLN LYS THR VAL SEQRES 25 A 409 GLN ASP GLY LEU ARG GLU GLU ALA LEU PHE ALA GLN PRO SEQRES 26 A 409 ASN GLY MSE THR VAL ASP GLU ASP GLY ASN PHE TYR ILE SEQRES 27 A 409 VAL ASP GLY PHE LYS GLY TYR CYS LEU ARG LYS LEU ASP SEQRES 28 A 409 ILE LEU ASP GLY TYR VAL SER THR VAL ALA GLY GLN VAL SEQRES 29 A 409 ASP VAL ALA SER GLN ILE ASP GLY THR PRO LEU GLU ALA SEQRES 30 A 409 THR PHE ASN TYR PRO TYR ASP ILE CYS TYR ASP GLY GLU SEQRES 31 A 409 GLY GLY TYR TRP ILE ALA GLU ALA TRP GLY LYS ALA ILE SEQRES 32 A 409 ARG LYS TYR ALA VAL GLU MODRES 3HRP MSE A 45 MET SELENOMETHIONINE MODRES 3HRP MSE A 154 MET SELENOMETHIONINE MODRES 3HRP MSE A 221 MET SELENOMETHIONINE MODRES 3HRP MSE A 304 MET SELENOMETHIONINE MODRES 3HRP MSE A 349 MET SELENOMETHIONINE HET MSE A 45 13 HET MSE A 154 8 HET MSE A 221 8 HET MSE A 304 8 HET MSE A 349 8 HET MPD A 1 8 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 9 4 HET EDO A 10 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 13 4 HET EDO A 14 4 HET EDO A 15 4 HETNAM MSE SELENOMETHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 MPD C6 H14 O2 FORMUL 3 EDO 14(C2 H6 O2) FORMUL 17 HOH *354(H2 O) HELIX 1 1 ASP A 65 SER A 67 5 3 HELIX 2 2 ALA A 223 GLY A 225 5 3 HELIX 3 3 GLU A 339 ALA A 341 5 3 SHEET 1 A 8 THR A 40 MSE A 45 0 SHEET 2 A 8 LYS A 54 SER A 60 -1 O LYS A 58 N SER A 43 SHEET 3 A 8 THR A 91 LEU A 95 -1 O CYS A 94 N VAL A 55 SHEET 4 A 8 GLU A 79 ASP A 88 -1 N ILE A 85 O TYR A 93 SHEET 5 A 8 VAL A 69 VAL A 74 -1 N PHE A 73 O ARG A 80 SHEET 6 A 8 GLY A 102 VAL A 110 -1 O ARG A 105 N VAL A 74 SHEET 7 A 8 PHE A 121 TYR A 123 -1 O PHE A 121 N ASN A 104 SHEET 8 A 8 GLU A 48 GLY A 49 1 N GLY A 49 O LYS A 122 SHEET 1 B 7 THR A 40 MSE A 45 0 SHEET 2 B 7 LYS A 54 SER A 60 -1 O LYS A 58 N SER A 43 SHEET 3 B 7 THR A 91 LEU A 95 -1 O CYS A 94 N VAL A 55 SHEET 4 B 7 GLU A 79 ASP A 88 -1 N ILE A 85 O TYR A 93 SHEET 5 B 7 VAL A 69 VAL A 74 -1 N PHE A 73 O ARG A 80 SHEET 6 B 7 GLY A 102 VAL A 110 -1 O ARG A 105 N VAL A 74 SHEET 7 B 7 LYS A 113 THR A 116 -1 O VAL A 115 N VAL A 108 SHEET 1 C 4 ALA A 126 GLY A 134 0 SHEET 2 C 4 ALA A 423 GLU A 430 -1 O ALA A 428 N ASN A 128 SHEET 3 C 4 GLY A 413 GLU A 418 -1 N ILE A 416 O ARG A 425 SHEET 4 C 4 PRO A 403 TYR A 408 -1 N TYR A 404 O ALA A 417 SHEET 1 D 4 MSE A 154 ALA A 159 0 SHEET 2 D 4 THR A 164 GLN A 169 -1 O LEU A 166 N ALA A 158 SHEET 3 D 4 ARG A 174 SER A 179 -1 O ARG A 176 N ALA A 167 SHEET 4 D 4 LYS A 184 PRO A 190 -1 O THR A 186 N LEU A 177 SHEET 1 E 4 ALA A 198 VAL A 199 0 SHEET 2 E 4 ARG A 205 ILE A 209 -1 O TYR A 207 N ALA A 198 SHEET 3 E 4 THR A 216 MSE A 221 -1 O TYR A 220 N VAL A 206 SHEET 4 E 4 PRO A 228 GLN A 233 -1 O GLY A 232 N VAL A 217 SHEET 1 F 4 ALA A 246 LEU A 247 0 SHEET 2 F 4 TRP A 253 VAL A 257 -1 O TYR A 255 N ALA A 246 SHEET 3 F 4 ASN A 262 ASN A 267 -1 O PHE A 266 N LEU A 254 SHEET 4 F 4 VAL A 273 GLN A 278 -1 O LYS A 277 N PHE A 263 SHEET 1 G 4 TYR A 292 TYR A 296 0 SHEET 2 G 4 ASN A 301 ASP A 306 -1 O ASN A 301 N TYR A 296 SHEET 3 G 4 SER A 311 ILE A 315 -1 O ILE A 315 N PHE A 302 SHEET 4 G 4 CYS A 321 GLY A 326 -1 O GLU A 322 N LYS A 314 SHEET 1 H 5 GLY A 336 LEU A 337 0 SHEET 2 H 5 TYR A 377 GLY A 383 -1 O VAL A 378 N GLY A 336 SHEET 3 H 5 CYS A 367 ASP A 372 -1 N LYS A 370 O SER A 379 SHEET 4 H 5 PHE A 357 ASP A 361 -1 N ILE A 359 O ARG A 369 SHEET 5 H 5 PRO A 346 VAL A 351 -1 N ASN A 347 O VAL A 360 LINK C PHE A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N PRO A 46 1555 1555 1.35 LINK C TYR A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N TRP A 155 1555 1555 1.33 LINK C TYR A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N LYS A 222 1555 1555 1.33 LINK C TYR A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N SER A 305 1555 1555 1.33 LINK C GLY A 348 N MSE A 349 1555 1555 1.33 LINK C MSE A 349 N THR A 350 1555 1555 1.33 CISPEP 1 MSE A 45 PRO A 46 0 -10.31 CISPEP 2 MSE A 45 PRO A 46 0 -9.55 CISPEP 3 ASN A 288 PRO A 289 0 5.26 SITE 1 AC1 11 HOH A 21 ARG A 98 GLN A 99 LEU A 100 SITE 2 AC1 11 GLN A 125 ASP A 352 GLU A 353 ASP A 354 SITE 3 AC1 11 HOH A 479 HOH A 531 HOH A 609 SITE 1 AC2 8 PRO A 38 VAL A 39 LYS A 113 GLU A 114 SITE 2 AC2 8 VAL A 115 TRP A 420 LYS A 422 HOH A 527 SITE 1 AC3 5 TYR A 33 LYS A 68 HOH A 457 HOH A 541 SITE 2 AC3 5 HOH A 629 SITE 1 AC4 7 VAL A 41 GLU A 42 THR A 117 ASP A 118 SITE 2 AC4 7 GLY A 119 HOH A 557 HOH A 656 SITE 1 AC5 8 PRO A 35 ASN A 36 TYR A 153 GLN A 345 SITE 2 AC5 8 TYR A 402 TYR A 404 TRP A 420 HOH A 447 SITE 1 AC6 4 ASP A 335 THR A 380 HOH A 537 HOH A 660 SITE 1 AC7 8 LYS A 68 LYS A 70 ILE A 109 ASP A 111 SITE 2 AC7 8 GLY A 112 ALA A 388 HOH A 470 HOH A 764 SITE 1 AC8 7 ALA A 77 LEU A 100 ASP A 372 ASP A 375 SITE 2 AC8 7 HOH A 469 HOH A 485 HOH A 612 SITE 1 AC9 3 GLU A 42 GLY A 59 HOH A 598 SITE 1 BC1 7 ASP A 248 GLU A 249 TYR A 295 SER A 300 SITE 2 BC1 7 PRO A 317 HOH A 607 HOH A 640 SITE 1 BC2 7 SER A 43 PHE A 44 VAL A 47 ASP A 145 SITE 2 BC2 7 SER A 148 HOH A 657 HOH A 746 SITE 1 BC3 5 VAL A 199 THR A 200 LYS A 201 LYS A 203 SITE 2 BC3 5 HOH A 519 SITE 1 BC4 8 GLU A 212 GLY A 213 HIS A 215 PHE A 238 SITE 2 BC4 8 SER A 239 GLY A 240 LYS A 241 HOH A 750 SITE 1 BC5 6 GLY A 191 PHE A 192 LYS A 193 HOH A 482 SITE 2 BC5 6 HOH A 501 HOH A 517 SITE 1 BC6 5 GLY A 213 THR A 214 THR A 216 HOH A 473 SITE 2 BC6 5 HOH A 536 CRYST1 51.104 84.915 94.327 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010601 0.00000