HEADER TRANSCRIPTION 09-JUN-09 3HRR TITLE THE PRODUCT TEMPLATE DOMAIN FROM PKSA WITH HARRIS COMPOUND BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFLATOXIN BIOSYNTHESIS POLYKETIDE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1305-1660; COMPND 5 SYNONYM: PKS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS PARASITICUS; SOURCE 3 ORGANISM_TAXID: 5067; SOURCE 4 GENE: PKSA, PKSL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PKSA, AFLATOXIN, NORSOLORINIC ACID, POLYKETIDE, POLYKETIDE SYNTHASE, KEYWDS 2 PKS, ITERATIVE TYPE I PKS, HARRIS COMPOUND, HOT-DOG FOLD, KEYWDS 3 ACYLTRANSFERASE, MULTIFUNCTIONAL ENZYME, PHOSPHOPANTETHEINE, KEYWDS 4 TRANSFERASE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.P.KORMAN,S.C.TSAI REVDAT 4 06-SEP-23 3HRR 1 REMARK REVDAT 3 01-NOV-17 3HRR 1 REMARK REVDAT 2 29-DEC-09 3HRR 1 JRNL REVDAT 1 20-OCT-09 3HRR 0 JRNL AUTH J.M.CRAWFORD,T.P.KORMAN,J.W.LABONTE,A.L.VAGSTAD,E.A.HILL, JRNL AUTH 2 O.KAMARI-BIDKORPEH,S.C.TSAI,C.A.TOWNSEND JRNL TITL STRUCTURAL BASIS FOR BIOSYNTHETIC PROGRAMMING OF FUNGAL JRNL TITL 2 AROMATIC POLYKETIDE CYCLIZATION. JRNL REF NATURE V. 461 1139 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19847268 JRNL DOI 10.1038/NATURE08475 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 57591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.867 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5097 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6901 ; 1.523 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 6.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;34.663 ;23.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 862 ;14.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.442 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 781 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3834 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2344 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3440 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 406 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3239 ; 1.172 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5071 ; 1.899 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2159 ; 2.651 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 4.332 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 12.2 DEGS REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; SINGLE REMARK 200 CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6430 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HRQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.22 M AMMONIUM ACETATE, 20% PEG3350, REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.40450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.30450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.40450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.30450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1375 REMARK 465 GLY A 1376 REMARK 465 HIS A 1377 REMARK 465 PRO A 1378 REMARK 465 GLY A 1379 REMARK 465 ALA A 1380 REMARK 465 GLY A 1381 REMARK 465 ALA A 1382 REMARK 465 ILE A 1383 REMARK 465 ASP A 1384 REMARK 465 ALA A 1436 REMARK 465 ASP A 1437 REMARK 465 GLY A 1438 REMARK 465 LYS A 1596 REMARK 465 GLU A 1597 REMARK 465 THR A 1637 REMARK 465 VAL A 1638 REMARK 465 LYS A 1639 REMARK 465 LYS A 1640 REMARK 465 ALA A 1641 REMARK 465 ASP A 1642 REMARK 465 ARG A 1643 REMARK 465 GLN A 1644 REMARK 465 LEU A 1645 REMARK 465 GLY A 1646 REMARK 465 PHE A 1647 REMARK 465 LYS A 1648 REMARK 465 THR A 1649 REMARK 465 MET A 1650 REMARK 465 PRO A 1651 REMARK 465 SER A 1652 REMARK 465 PRO A 1653 REMARK 465 PRO A 1654 REMARK 465 PRO A 1655 REMARK 465 PRO A 1656 REMARK 465 THR A 1657 REMARK 465 THR A 1658 REMARK 465 THR A 1659 REMARK 465 MET A 1660 REMARK 465 ALA B 1375 REMARK 465 GLY B 1376 REMARK 465 HIS B 1377 REMARK 465 PRO B 1378 REMARK 465 GLY B 1379 REMARK 465 ALA B 1380 REMARK 465 GLY B 1381 REMARK 465 ALA B 1382 REMARK 465 ILE B 1383 REMARK 465 ASP B 1384 REMARK 465 ALA B 1436 REMARK 465 ASP B 1437 REMARK 465 GLY B 1438 REMARK 465 LYS B 1596 REMARK 465 GLU B 1597 REMARK 465 THR B 1637 REMARK 465 VAL B 1638 REMARK 465 LYS B 1639 REMARK 465 LYS B 1640 REMARK 465 ALA B 1641 REMARK 465 ASP B 1642 REMARK 465 ARG B 1643 REMARK 465 GLN B 1644 REMARK 465 LEU B 1645 REMARK 465 GLY B 1646 REMARK 465 PHE B 1647 REMARK 465 LYS B 1648 REMARK 465 THR B 1649 REMARK 465 MET B 1650 REMARK 465 PRO B 1651 REMARK 465 SER B 1652 REMARK 465 PRO B 1653 REMARK 465 PRO B 1654 REMARK 465 PRO B 1655 REMARK 465 PRO B 1656 REMARK 465 THR B 1657 REMARK 465 THR B 1658 REMARK 465 THR B 1659 REMARK 465 MET B 1660 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1441 -68.68 -104.99 REMARK 500 ASP B1441 -69.35 -101.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 1593 GLN A 1594 -123.49 REMARK 500 GLY B 1593 GLN B 1594 -135.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HC8 A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HC8 B 4000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HRQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH PALMITIC ACID DBREF 3HRR A 1305 1660 UNP Q12053 PKSL1_ASPPA 1305 1660 DBREF 3HRR B 1305 1660 UNP Q12053 PKSL1_ASPPA 1305 1660 SEQRES 1 A 356 GLU ILE LYS THR THR THR THR LEU HIS ARG VAL VAL GLU SEQRES 2 A 356 GLU THR THR LYS PRO LEU GLY ALA THR LEU VAL VAL GLU SEQRES 3 A 356 THR ASP ILE SER ARG LYS ASP VAL ASN GLY LEU ALA ARG SEQRES 4 A 356 GLY HIS LEU VAL ASP GLY ILE PRO LEU CYS THR PRO SER SEQRES 5 A 356 PHE TYR ALA ASP ILE ALA MET GLN VAL GLY GLN TYR SER SEQRES 6 A 356 MET GLN ARG LEU ARG ALA GLY HIS PRO GLY ALA GLY ALA SEQRES 7 A 356 ILE ASP GLY LEU VAL ASP VAL SER ASP MET VAL VAL ASP SEQRES 8 A 356 LYS ALA LEU VAL PRO HIS GLY LYS GLY PRO GLN LEU LEU SEQRES 9 A 356 ARG THR THR LEU THR MET GLU TRP PRO PRO LYS ALA ALA SEQRES 10 A 356 ALA THR THR ARG SER ALA LYS VAL LYS PHE ALA THR TYR SEQRES 11 A 356 PHE ALA ASP GLY LYS LEU ASP THR GLU HIS ALA SER CYS SEQRES 12 A 356 THR VAL ARG PHE THR SER ASP ALA GLN LEU LYS SER LEU SEQRES 13 A 356 ARG ARG SER VAL SER GLU TYR LYS THR HIS ILE ARG GLN SEQRES 14 A 356 LEU HIS ASP GLY HIS ALA LYS GLY GLN PHE MET ARG TYR SEQRES 15 A 356 ASN ARG LYS THR GLY TYR LYS LEU MET SER SER MET ALA SEQRES 16 A 356 ARG PHE ASN PRO ASP TYR MET LEU LEU ASP TYR LEU VAL SEQRES 17 A 356 LEU ASN GLU ALA GLU ASN GLU ALA ALA SER GLY VAL ASP SEQRES 18 A 356 PHE SER LEU GLY SER SER GLU GLY THR PHE ALA ALA HIS SEQRES 19 A 356 PRO ALA HIS VAL ASP ALA ILE THR GLN VAL ALA GLY PHE SEQRES 20 A 356 ALA MET ASN ALA ASN ASP ASN VAL ASP ILE GLU LYS GLN SEQRES 21 A 356 VAL TYR VAL ASN HIS GLY TRP ASP SER PHE GLN ILE TYR SEQRES 22 A 356 GLN PRO LEU ASP ASN SER LYS SER TYR GLN VAL TYR THR SEQRES 23 A 356 LYS MET GLY GLN ALA LYS GLU ASN ASP LEU VAL HIS GLY SEQRES 24 A 356 ASP VAL VAL VAL LEU ASP GLY GLU GLN ILE VAL ALA PHE SEQRES 25 A 356 PHE ARG GLY LEU THR LEU ARG SER VAL PRO ARG GLY ALA SEQRES 26 A 356 LEU ARG VAL VAL LEU GLN THR THR VAL LYS LYS ALA ASP SEQRES 27 A 356 ARG GLN LEU GLY PHE LYS THR MET PRO SER PRO PRO PRO SEQRES 28 A 356 PRO THR THR THR MET SEQRES 1 B 356 GLU ILE LYS THR THR THR THR LEU HIS ARG VAL VAL GLU SEQRES 2 B 356 GLU THR THR LYS PRO LEU GLY ALA THR LEU VAL VAL GLU SEQRES 3 B 356 THR ASP ILE SER ARG LYS ASP VAL ASN GLY LEU ALA ARG SEQRES 4 B 356 GLY HIS LEU VAL ASP GLY ILE PRO LEU CYS THR PRO SER SEQRES 5 B 356 PHE TYR ALA ASP ILE ALA MET GLN VAL GLY GLN TYR SER SEQRES 6 B 356 MET GLN ARG LEU ARG ALA GLY HIS PRO GLY ALA GLY ALA SEQRES 7 B 356 ILE ASP GLY LEU VAL ASP VAL SER ASP MET VAL VAL ASP SEQRES 8 B 356 LYS ALA LEU VAL PRO HIS GLY LYS GLY PRO GLN LEU LEU SEQRES 9 B 356 ARG THR THR LEU THR MET GLU TRP PRO PRO LYS ALA ALA SEQRES 10 B 356 ALA THR THR ARG SER ALA LYS VAL LYS PHE ALA THR TYR SEQRES 11 B 356 PHE ALA ASP GLY LYS LEU ASP THR GLU HIS ALA SER CYS SEQRES 12 B 356 THR VAL ARG PHE THR SER ASP ALA GLN LEU LYS SER LEU SEQRES 13 B 356 ARG ARG SER VAL SER GLU TYR LYS THR HIS ILE ARG GLN SEQRES 14 B 356 LEU HIS ASP GLY HIS ALA LYS GLY GLN PHE MET ARG TYR SEQRES 15 B 356 ASN ARG LYS THR GLY TYR LYS LEU MET SER SER MET ALA SEQRES 16 B 356 ARG PHE ASN PRO ASP TYR MET LEU LEU ASP TYR LEU VAL SEQRES 17 B 356 LEU ASN GLU ALA GLU ASN GLU ALA ALA SER GLY VAL ASP SEQRES 18 B 356 PHE SER LEU GLY SER SER GLU GLY THR PHE ALA ALA HIS SEQRES 19 B 356 PRO ALA HIS VAL ASP ALA ILE THR GLN VAL ALA GLY PHE SEQRES 20 B 356 ALA MET ASN ALA ASN ASP ASN VAL ASP ILE GLU LYS GLN SEQRES 21 B 356 VAL TYR VAL ASN HIS GLY TRP ASP SER PHE GLN ILE TYR SEQRES 22 B 356 GLN PRO LEU ASP ASN SER LYS SER TYR GLN VAL TYR THR SEQRES 23 B 356 LYS MET GLY GLN ALA LYS GLU ASN ASP LEU VAL HIS GLY SEQRES 24 B 356 ASP VAL VAL VAL LEU ASP GLY GLU GLN ILE VAL ALA PHE SEQRES 25 B 356 PHE ARG GLY LEU THR LEU ARG SER VAL PRO ARG GLY ALA SEQRES 26 B 356 LEU ARG VAL VAL LEU GLN THR THR VAL LYS LYS ALA ASP SEQRES 27 B 356 ARG GLN LEU GLY PHE LYS THR MET PRO SER PRO PRO PRO SEQRES 28 B 356 PRO THR THR THR MET HET HC8 A4000 21 HET HC8 B4000 21 HETNAM HC8 1-(3-ACETYL-4,5-DIHYDROXY-7-METHOXYNAPHTHALEN-2-YL) HETNAM 2 HC8 PROPAN-2-ONE FORMUL 3 HC8 2(C16 H16 O5) FORMUL 5 HOH *392(H2 O) HELIX 1 1 VAL A 1338 ARG A 1343 1 6 HELIX 2 2 THR A 1354 ARG A 1374 1 21 HELIX 3 3 ALA A 1420 THR A 1424 5 5 HELIX 4 4 ASP A 1454 SER A 1463 1 10 HELIX 5 5 SER A 1463 ALA A 1479 1 17 HELIX 6 6 ARG A 1488 SER A 1496 1 9 HELIX 7 7 PRO A 1503 MET A 1506 5 4 HELIX 8 8 GLU A 1515 GLU A 1517 5 3 HELIX 9 9 SER A 1527 GLY A 1529 5 3 HELIX 10 10 HIS A 1538 ALA A 1555 1 18 HELIX 11 11 ARG A 1627 THR A 1636 1 10 HELIX 12 12 VAL B 1338 ARG B 1343 1 6 HELIX 13 13 THR B 1354 ARG B 1374 1 21 HELIX 14 14 ALA B 1420 THR B 1424 5 5 HELIX 15 15 ASP B 1454 LYS B 1480 1 27 HELIX 16 16 ARG B 1488 SER B 1496 1 9 HELIX 17 17 PRO B 1503 MET B 1506 5 4 HELIX 18 18 GLU B 1515 GLU B 1517 5 3 HELIX 19 19 SER B 1527 GLY B 1529 5 3 HELIX 20 20 HIS B 1538 ALA B 1555 1 18 HELIX 21 21 ARG B 1627 THR B 1636 1 10 SHEET 1 A13 ARG A1314 THR A1320 0 SHEET 2 A13 GLY A1324 ASP A1332 -1 O VAL A1328 N VAL A1316 SHEET 3 A13 LEU A1407 GLU A1415 -1 O LEU A1412 N LEU A1327 SHEET 4 A13 SER A1426 TYR A1434 -1 O TYR A1434 N LEU A1407 SHEET 5 A13 THR A1442 THR A1452 -1 O CYS A1447 N VAL A1429 SHEET 6 A13 LEU A1386 VAL A1394 -1 N ASP A1388 O ARG A1450 SHEET 7 A13 GLN A1564 ILE A1576 -1 O HIS A1569 N VAL A1394 SHEET 8 A13 GLN A1612 PRO A1626 -1 O VAL A1625 N VAL A1565 SHEET 9 A13 LEU A1600 ASP A1609 -1 N VAL A1607 O VAL A1614 SHEET 10 A13 SER A1585 LYS A1591 -1 N GLN A1587 O LEU A1608 SHEET 11 A13 GLU A1519 ASP A1525 -1 N VAL A1524 O TYR A1586 SHEET 12 A13 LEU A1508 ASN A1514 -1 N VAL A1512 O ALA A1521 SHEET 13 A13 MET A1484 ASN A1487 -1 N TYR A1486 O LEU A1511 SHEET 1 B 3 ILE A1350 LEU A1352 0 SHEET 2 B 3 HIS A1345 VAL A1347 -1 N VAL A1347 O ILE A1350 SHEET 3 B 3 ARG A1500 PHE A1501 -1 O ARG A1500 N LEU A1346 SHEET 1 C13 ARG B1314 THR B1320 0 SHEET 2 C13 GLY B1324 ASP B1332 -1 O VAL B1328 N VAL B1316 SHEET 3 C13 LEU B1407 GLU B1415 -1 O LEU B1412 N LEU B1327 SHEET 4 C13 SER B1426 TYR B1434 -1 O TYR B1434 N LEU B1407 SHEET 5 C13 THR B1442 THR B1452 -1 O CYS B1447 N VAL B1429 SHEET 6 C13 LEU B1386 VAL B1394 -1 N SER B1390 O THR B1448 SHEET 7 C13 GLN B1564 ILE B1576 -1 O HIS B1569 N VAL B1394 SHEET 8 C13 GLN B1612 PRO B1626 -1 O VAL B1625 N VAL B1565 SHEET 9 C13 LEU B1600 ASP B1609 -1 N VAL B1605 O PHE B1617 SHEET 10 C13 SER B1585 LYS B1591 -1 N GLN B1587 O LEU B1608 SHEET 11 C13 GLU B1519 ASP B1525 -1 N VAL B1524 O TYR B1586 SHEET 12 C13 LEU B1508 ASN B1514 -1 N VAL B1512 O ALA B1521 SHEET 13 C13 MET B1484 ASN B1487 -1 N TYR B1486 O LEU B1511 SHEET 1 D 3 ILE B1350 LEU B1352 0 SHEET 2 D 3 HIS B1345 VAL B1347 -1 N VAL B1347 O ILE B1350 SHEET 3 D 3 ARG B1500 PHE B1501 -1 O ARG B1500 N LEU B1346 CISPEP 1 PRO B 1418 LYS B 1419 0 -7.64 SITE 1 AC1 8 HOH A 80 HOH A 281 HIS A1345 VAL A1347 SITE 2 AC1 8 CYS A1353 VAL A1394 ALA A1397 VAL A1567 SITE 1 AC2 9 HOH B 79 HOH B 197 HIS B1345 VAL B1347 SITE 2 AC2 9 CYS B1353 VAL B1394 LYS B1396 ALA B1397 SITE 3 AC2 9 VAL B1567 CRYST1 88.809 90.609 90.660 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011030 0.00000