HEADER DNA BINDING PROTEIN 11-JUN-09 3HTH TITLE CRYSTAL STRUCTURE OF MULTIDRUG BINDING PROTEIN EBRR COMPLEXED WITH TITLE 2 PROFLAVIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EBRA REPRESSOR; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; SOURCE 3 ORGANISM_TAXID: 1916; SOURCE 4 STRAIN: TK64; SOURCE 5 GENE: EBRR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TETR FAMILY, MULTIDRUG RESISTANCE, MULTIDRUG BINDING PROTEIN, DNA- KEYWDS 2 BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, DNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.DONG,L.NI,M.SCHUMACHER,R.BRENNAN REVDAT 2 06-SEP-23 3HTH 1 REMARK SEQADV REVDAT 1 14-JUL-10 3HTH 0 JRNL AUTH J.DONG,L.NI,M.SCHUMACHER,R.BRENNAN JRNL TITL STRUCTURAL PLASTICITY IS KEY TO MULTIPLE LIGAND BINDING BY JRNL TITL 2 THE MULTIDRUG BINDING REGULATOR EBRR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2151 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.89100 REMARK 3 B22 (A**2) : 9.89100 REMARK 3 B33 (A**2) : -19.78200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.280 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.374 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.417 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.752 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.799 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 55.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 86.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M LITHIUM SULFATE, 0.1 M TRIS-HCL, REMARK 280 0.01 M NICKEL CHLORIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.57667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.57667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 89.15333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 199 LIES ON A SPECIAL POSITION. REMARK 375 NI NI C 200 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 324 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 HIS A 5 REMARK 465 ASP A 6 REMARK 465 PRO A 178 REMARK 465 VAL A 179 REMARK 465 PRO A 180 REMARK 465 ALA A 181 REMARK 465 THR A 182 REMARK 465 ARG A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 ARG A 186 REMARK 465 GLY A 187 REMARK 465 PRO A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 HIS A 191 REMARK 465 PRO A 192 REMARK 465 PRO A 193 REMARK 465 ALA A 194 REMARK 465 THR A 195 REMARK 465 ALA A 196 REMARK 465 GLY A 197 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 4 REMARK 465 PRO B 178 REMARK 465 VAL B 179 REMARK 465 PRO B 180 REMARK 465 ALA B 181 REMARK 465 THR B 182 REMARK 465 ARG B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 ARG B 186 REMARK 465 GLY B 187 REMARK 465 PRO B 188 REMARK 465 GLY B 189 REMARK 465 SER B 190 REMARK 465 HIS B 191 REMARK 465 PRO B 192 REMARK 465 PRO B 193 REMARK 465 ALA B 194 REMARK 465 THR B 195 REMARK 465 ALA B 196 REMARK 465 GLY B 197 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 ARG C 3 REMARK 465 ARG C 4 REMARK 465 HIS C 5 REMARK 465 ASP C 6 REMARK 465 PRO C 7 REMARK 465 PRO C 178 REMARK 465 VAL C 179 REMARK 465 PRO C 180 REMARK 465 ALA C 181 REMARK 465 THR C 182 REMARK 465 ARG C 183 REMARK 465 ASP C 184 REMARK 465 GLY C 185 REMARK 465 ARG C 186 REMARK 465 GLY C 187 REMARK 465 PRO C 188 REMARK 465 GLY C 189 REMARK 465 SER C 190 REMARK 465 HIS C 191 REMARK 465 PRO C 192 REMARK 465 PRO C 193 REMARK 465 ALA C 194 REMARK 465 THR C 195 REMARK 465 ALA C 196 REMARK 465 GLY C 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 159 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 19 OE1 GLU B 37 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 8 N GLU B 8 CA -0.121 REMARK 500 GLU B 8 CA GLU B 8 CB -0.186 REMARK 500 GLU B 8 CB GLU B 8 CG -0.200 REMARK 500 GLU B 8 CG GLU B 8 CD -0.128 REMARK 500 GLU B 8 CD GLU B 8 OE2 -0.088 REMARK 500 GLU B 8 CA GLU B 8 C -0.209 REMARK 500 GLU B 8 C GLU B 8 O -0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 31 -31.20 63.59 REMARK 500 GLU A 81 50.88 -106.74 REMARK 500 ASP A 83 92.56 -58.77 REMARK 500 ASP A 99 110.10 58.30 REMARK 500 PRO A 117 -33.93 -34.59 REMARK 500 LEU A 133 -1.71 -54.48 REMARK 500 LEU A 134 28.15 -170.04 REMARK 500 ALA A 136 -19.60 -44.43 REMARK 500 ARG A 137 49.07 -73.25 REMARK 500 THR A 138 159.09 52.01 REMARK 500 ASP A 139 107.88 75.06 REMARK 500 ASP B 6 44.06 -173.62 REMARK 500 PRO B 7 -39.74 -27.23 REMARK 500 PRO B 80 20.61 -64.94 REMARK 500 ASP B 99 98.00 71.11 REMARK 500 PRO B 163 152.53 -43.12 REMARK 500 LYS C 24 6.26 -179.62 REMARK 500 LEU C 42 -5.40 -44.21 REMARK 500 ALA C 58 -75.96 -60.04 REMARK 500 ASN C 64 76.62 21.33 REMARK 500 GLU C 65 -100.00 -114.77 REMARK 500 PHE C 67 -30.00 154.50 REMARK 500 ASP C 99 110.20 70.30 REMARK 500 LEU C 111 -75.05 -66.21 REMARK 500 GLU C 128 -73.22 -27.67 REMARK 500 THR C 138 -113.23 -136.27 REMARK 500 ASP C 161 12.51 53.31 REMARK 500 PRO C 163 -121.09 -65.60 REMARK 500 TYR C 164 -36.20 -146.86 REMARK 500 ASP C 165 78.58 52.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO B 7 -12.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 NE2 REMARK 620 2 GLU A 94 OE1 145.8 REMARK 620 3 GLU A 94 OE2 108.9 57.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 74 NE2 REMARK 620 2 GLU C 94 OE1 86.9 REMARK 620 3 GLU C 94 OE2 145.4 59.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRL B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HTA RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH IMIDAZOLE REMARK 900 RELATED ID: 3HTI RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH MALACHITE GREEN REMARK 900 RELATED ID: 3HTJ RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ETHIDIUM DBREF 3HTH A 1 197 UNP Q79SH7 Q79SH7_STRLI 1 197 DBREF 3HTH B 1 197 UNP Q79SH7 Q79SH7_STRLI 1 197 DBREF 3HTH C 1 197 UNP Q79SH7 Q79SH7_STRLI 1 197 SEQADV 3HTH MET A -19 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY A -18 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER A -17 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER A -16 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS A -15 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS A -14 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS A -13 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS A -12 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS A -11 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS A -10 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER A -9 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER A -8 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY A -7 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH LEU A -6 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH VAL A -5 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH PRO A -4 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH ARG A -3 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY A -2 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER A -1 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS A 0 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH MET B -19 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY B -18 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER B -17 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER B -16 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS B -15 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS B -14 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS B -13 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS B -12 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS B -11 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS B -10 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER B -9 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER B -8 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY B -7 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH LEU B -6 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH VAL B -5 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH PRO B -4 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH ARG B -3 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY B -2 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER B -1 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS B 0 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH MET C -19 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY C -18 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER C -17 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER C -16 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS C -15 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS C -14 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS C -13 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS C -12 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS C -11 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS C -10 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER C -9 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER C -8 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY C -7 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH LEU C -6 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH VAL C -5 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH PRO C -4 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH ARG C -3 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH GLY C -2 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH SER C -1 UNP Q79SH7 EXPRESSION TAG SEQADV 3HTH HIS C 0 UNP Q79SH7 EXPRESSION TAG SEQRES 1 A 217 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 217 LEU VAL PRO ARG GLY SER HIS MET PRO ARG ARG HIS ASP SEQRES 3 A 217 PRO GLU ARG ARG GLN ARG ILE ILE ASP ALA ALA ILE ARG SEQRES 4 A 217 VAL VAL GLY GLN LYS GLY ILE ALA GLY LEU SER HIS ARG SEQRES 5 A 217 THR VAL ALA ALA GLU ALA ASP VAL PRO LEU GLY SER THR SEQRES 6 A 217 THR TYR HIS PHE ALA THR LEU ASP ASP LEU MET VAL ALA SEQRES 7 A 217 ALA LEU ARG GLN ALA ASN GLU GLY PHE ALA ARG VAL VAL SEQRES 8 A 217 ALA ALA HIS PRO ALA LEU SER ASP PRO GLU ALA ASP LEU SEQRES 9 A 217 SER GLY GLU LEU ALA ARG VAL LEU GLY GLU TRP LEU GLY SEQRES 10 A 217 GLY ASP ARG THR GLY VAL GLU LEU GLU TYR GLU LEU TYR SEQRES 11 A 217 LEU ALA ALA LEU ARG ARG PRO ALA LEU ARG PRO VAL ALA SEQRES 12 A 217 ALA GLU TRP ALA GLU GLY VAL GLY ALA LEU LEU ALA ALA SEQRES 13 A 217 ARG THR ASP PRO THR THR ALA ARG ALA LEU VAL ALA VAL SEQRES 14 A 217 LEU ASP GLY ILE CYS LEU GLN VAL LEU LEU THR ASP THR SEQRES 15 A 217 PRO TYR ASP GLU GLU TYR ALA ARG GLU VAL LEU THR ARG SEQRES 16 A 217 LEU ILE PRO VAL PRO ALA THR ARG ASP GLY ARG GLY PRO SEQRES 17 A 217 GLY SER HIS PRO PRO ALA THR ALA GLY SEQRES 1 B 217 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 217 LEU VAL PRO ARG GLY SER HIS MET PRO ARG ARG HIS ASP SEQRES 3 B 217 PRO GLU ARG ARG GLN ARG ILE ILE ASP ALA ALA ILE ARG SEQRES 4 B 217 VAL VAL GLY GLN LYS GLY ILE ALA GLY LEU SER HIS ARG SEQRES 5 B 217 THR VAL ALA ALA GLU ALA ASP VAL PRO LEU GLY SER THR SEQRES 6 B 217 THR TYR HIS PHE ALA THR LEU ASP ASP LEU MET VAL ALA SEQRES 7 B 217 ALA LEU ARG GLN ALA ASN GLU GLY PHE ALA ARG VAL VAL SEQRES 8 B 217 ALA ALA HIS PRO ALA LEU SER ASP PRO GLU ALA ASP LEU SEQRES 9 B 217 SER GLY GLU LEU ALA ARG VAL LEU GLY GLU TRP LEU GLY SEQRES 10 B 217 GLY ASP ARG THR GLY VAL GLU LEU GLU TYR GLU LEU TYR SEQRES 11 B 217 LEU ALA ALA LEU ARG ARG PRO ALA LEU ARG PRO VAL ALA SEQRES 12 B 217 ALA GLU TRP ALA GLU GLY VAL GLY ALA LEU LEU ALA ALA SEQRES 13 B 217 ARG THR ASP PRO THR THR ALA ARG ALA LEU VAL ALA VAL SEQRES 14 B 217 LEU ASP GLY ILE CYS LEU GLN VAL LEU LEU THR ASP THR SEQRES 15 B 217 PRO TYR ASP GLU GLU TYR ALA ARG GLU VAL LEU THR ARG SEQRES 16 B 217 LEU ILE PRO VAL PRO ALA THR ARG ASP GLY ARG GLY PRO SEQRES 17 B 217 GLY SER HIS PRO PRO ALA THR ALA GLY SEQRES 1 C 217 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 217 LEU VAL PRO ARG GLY SER HIS MET PRO ARG ARG HIS ASP SEQRES 3 C 217 PRO GLU ARG ARG GLN ARG ILE ILE ASP ALA ALA ILE ARG SEQRES 4 C 217 VAL VAL GLY GLN LYS GLY ILE ALA GLY LEU SER HIS ARG SEQRES 5 C 217 THR VAL ALA ALA GLU ALA ASP VAL PRO LEU GLY SER THR SEQRES 6 C 217 THR TYR HIS PHE ALA THR LEU ASP ASP LEU MET VAL ALA SEQRES 7 C 217 ALA LEU ARG GLN ALA ASN GLU GLY PHE ALA ARG VAL VAL SEQRES 8 C 217 ALA ALA HIS PRO ALA LEU SER ASP PRO GLU ALA ASP LEU SEQRES 9 C 217 SER GLY GLU LEU ALA ARG VAL LEU GLY GLU TRP LEU GLY SEQRES 10 C 217 GLY ASP ARG THR GLY VAL GLU LEU GLU TYR GLU LEU TYR SEQRES 11 C 217 LEU ALA ALA LEU ARG ARG PRO ALA LEU ARG PRO VAL ALA SEQRES 12 C 217 ALA GLU TRP ALA GLU GLY VAL GLY ALA LEU LEU ALA ALA SEQRES 13 C 217 ARG THR ASP PRO THR THR ALA ARG ALA LEU VAL ALA VAL SEQRES 14 C 217 LEU ASP GLY ILE CYS LEU GLN VAL LEU LEU THR ASP THR SEQRES 15 C 217 PRO TYR ASP GLU GLU TYR ALA ARG GLU VAL LEU THR ARG SEQRES 16 C 217 LEU ILE PRO VAL PRO ALA THR ARG ASP GLY ARG GLY PRO SEQRES 17 C 217 GLY SER HIS PRO PRO ALA THR ALA GLY HET NI A 199 1 HET NI A 200 1 HET PRL A 201 16 HET PRL B 201 16 HET NI C 200 1 HETNAM NI NICKEL (II) ION HETNAM PRL PROFLAVIN FORMUL 4 NI 3(NI 2+) FORMUL 6 PRL 2(C13 H11 N3) FORMUL 9 HOH *81(H2 O) HELIX 1 1 PRO A 7 GLY A 25 1 19 HELIX 2 2 ILE A 26 LEU A 29 5 4 HELIX 3 3 HIS A 31 ALA A 38 1 8 HELIX 4 4 GLY A 43 PHE A 49 1 7 HELIX 5 5 THR A 51 ASN A 64 1 14 HELIX 6 6 GLU A 65 ALA A 73 1 9 HELIX 7 7 HIS A 74 SER A 78 5 5 HELIX 8 8 ASP A 83 GLY A 98 1 16 HELIX 9 9 ASP A 99 ALA A 112 1 14 HELIX 10 10 ALA A 113 ALA A 118 5 6 HELIX 11 11 LEU A 119 LEU A 133 1 15 HELIX 12 12 ASP A 139 LEU A 159 1 21 HELIX 13 13 ASP A 165 ILE A 177 1 13 HELIX 14 14 ASP B 6 GLY B 25 1 20 HELIX 15 15 ILE B 26 LEU B 29 5 4 HELIX 16 16 SER B 30 ASP B 39 1 10 HELIX 17 17 PRO B 41 PHE B 49 1 9 HELIX 18 18 THR B 51 HIS B 74 1 24 HELIX 19 19 PRO B 75 SER B 78 5 4 HELIX 20 20 ASP B 83 GLY B 97 1 15 HELIX 21 21 ASP B 99 ALA B 112 1 14 HELIX 22 22 ALA B 113 ARG B 115 5 3 HELIX 23 23 ARG B 116 PRO B 117 5 2 HELIX 24 24 ALA B 118 ALA B 136 1 19 HELIX 25 25 ASP B 139 ASP B 161 1 23 HELIX 26 26 ASP B 165 ILE B 177 1 13 HELIX 27 27 GLU C 8 GLY C 22 1 15 HELIX 28 28 GLY C 25 LEU C 29 5 5 HELIX 29 29 SER C 30 ASP C 39 1 10 HELIX 30 30 GLY C 43 PHE C 49 1 7 HELIX 31 31 THR C 51 GLN C 62 1 12 HELIX 32 32 PHE C 67 HIS C 74 1 8 HELIX 33 33 ASP C 83 GLY C 97 1 15 HELIX 34 34 ARG C 100 ARG C 116 1 17 HELIX 35 35 LEU C 119 THR C 138 1 20 HELIX 36 36 ASP C 139 ASP C 161 1 23 HELIX 37 37 ASP C 165 ILE C 177 1 13 LINK NE2 HIS A 74 NI NI A 200 1555 1555 1.83 LINK OE1 GLU A 94 NI NI A 200 1555 1555 2.31 LINK OE2 GLU A 94 NI NI A 200 1555 1555 2.21 LINK NE2 HIS C 74 NI NI C 200 1555 1555 1.94 LINK OE1 GLU C 94 NI NI C 200 1555 1555 1.97 LINK OE2 GLU C 94 NI NI C 200 1555 1555 2.38 SITE 1 AC1 4 HIS A 74 GLU A 94 HIS B 74 GLU B 94 SITE 1 AC2 2 HIS C 74 GLU C 94 SITE 1 AC3 8 PHE A 67 VAL A 70 TRP A 95 GLU A 106 SITE 2 AC3 8 TYR A 107 TYR A 110 TRP A 126 ASP A 151 SITE 1 AC4 7 PHE B 67 VAL B 70 TRP B 95 TYR B 107 SITE 2 AC4 7 TYR B 110 TRP B 126 ASP B 151 CRYST1 99.719 99.719 133.730 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010028 0.005790 0.000000 0.00000 SCALE2 0.000000 0.011580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007478 0.00000