HEADER TRANSFERASE 12-JUN-09 3HTV TITLE CRYSTAL STRUCTURE OF D-ALLOSE KINASE (NP_418508.1) FROM ESCHERICHIA TITLE 2 COLI K12 AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALLOSE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALLOKINASE; COMPND 5 EC: 2.7.1.55; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: ALSK, B4084, JW5724, NP_418508.1, YJCT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_418508.1, D-ALLOSE KINASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, ATP- KEYWDS 3 BINDING, CARBOHYDRATE METABOLISM, KINASE, NUCLEOTIDE-BINDING, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3HTV 1 SEQADV REVDAT 4 24-JUL-19 3HTV 1 REMARK LINK REVDAT 3 01-NOV-17 3HTV 1 REMARK REVDAT 2 13-JUL-11 3HTV 1 VERSN REVDAT 1 23-JUN-09 3HTV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF D-ALLOSE KINASE (NP_418508.1) FROM JRNL TITL 2 ESCHERICHIA COLI K12 AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 20519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1051 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.24000 REMARK 3 B22 (A**2) : -2.32000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2215 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1467 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3023 ; 1.778 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3583 ; 1.343 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 3.942 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;30.633 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;11.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.437 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2517 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 1.201 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 570 ; 0.196 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2261 ; 2.317 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 807 ; 3.995 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 755 ; 5.741 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 163 REMARK 3 RESIDUE RANGE : A 185 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0950 68.9650 50.7790 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.0446 REMARK 3 T33: 0.1211 T12: 0.0023 REMARK 3 T13: -0.0035 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.6297 L22: 1.8081 REMARK 3 L33: 0.6782 L12: -0.8030 REMARK 3 L13: -0.1854 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: 0.0095 S13: -0.0943 REMARK 3 S21: 0.2483 S22: 0.0049 S23: 0.0403 REMARK 3 S31: 0.0985 S32: -0.0002 S33: 0.0509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 4 REMARK 4 3HTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97910 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 65.795 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 8.4960 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.65200 REMARK 200 R SYM FOR SHELL (I) : 0.65200 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0000% MPD, 0.1M MES PH 6.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.73250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.73250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.35800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.69700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.35800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.69700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.73250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.35800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.69700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.73250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.35800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.69700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.43200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.73250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 2 REMARK 465 LEU A 164 REMARK 465 GLY A 165 REMARK 465 HIS A 166 REMARK 465 ILE A 167 REMARK 465 PRO A 168 REMARK 465 LEU A 169 REMARK 465 GLY A 170 REMARK 465 ASP A 171 REMARK 465 MSE A 172 REMARK 465 THR A 173 REMARK 465 GLN A 174 REMARK 465 HIS A 175 REMARK 465 CYS A 176 REMARK 465 ALA A 177 REMARK 465 CYS A 178 REMARK 465 GLY A 179 REMARK 465 ASN A 180 REMARK 465 PRO A 181 REMARK 465 GLY A 182 REMARK 465 CYS A 183 REMARK 465 LEU A 184 REMARK 465 GLN A 303 REMARK 465 PHE A 304 REMARK 465 CYS A 305 REMARK 465 ALA A 306 REMARK 465 LYS A 307 REMARK 465 ALA A 308 REMARK 465 PRO A 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 187 CG OD1 ND2 REMARK 470 ARG A 194 NE CZ NH1 NH2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 13 CG - SE - CE ANGL. DEV. = -20.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 187 30.19 -88.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394118 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HTV A 1 309 UNP P32718 ALSK_ECOLI 1 309 SEQADV 3HTV GLY A 0 UNP P32718 EXPRESSION TAG SEQRES 1 A 310 GLY MSE GLN LYS GLN HIS ASN VAL VAL ALA GLY VAL ASP SEQRES 2 A 310 MSE GLY ALA THR HIS ILE ARG PHE CYS LEU ARG THR ALA SEQRES 3 A 310 GLU GLY GLU THR LEU HIS CYS GLU LYS LYS ARG THR ALA SEQRES 4 A 310 GLU VAL ILE ALA PRO GLY LEU VAL SER GLY ILE GLY GLU SEQRES 5 A 310 MSE ILE ASP GLU GLN LEU ARG ARG PHE ASN ALA ARG CYS SEQRES 6 A 310 HIS GLY LEU VAL MSE GLY PHE PRO ALA LEU VAL SER LYS SEQRES 7 A 310 ASP LYS ARG THR ILE ILE SER THR PRO ASN LEU PRO LEU SEQRES 8 A 310 THR ALA ALA ASP LEU TYR ASP LEU ALA ASP LYS LEU GLU SEQRES 9 A 310 ASN THR LEU ASN CYS PRO VAL GLU PHE SER ARG ASP VAL SEQRES 10 A 310 ASN LEU GLN LEU SER TRP ASP VAL VAL GLU ASN ARG LEU SEQRES 11 A 310 THR GLN GLN LEU VAL LEU ALA ALA TYR LEU GLY THR GLY SEQRES 12 A 310 MSE GLY PHE ALA VAL TRP MSE ASN GLY ALA PRO TRP THR SEQRES 13 A 310 GLY ALA HIS GLY VAL ALA GLY GLU LEU GLY HIS ILE PRO SEQRES 14 A 310 LEU GLY ASP MSE THR GLN HIS CYS ALA CYS GLY ASN PRO SEQRES 15 A 310 GLY CYS LEU GLU THR ASN CYS SER GLY MSE ALA LEU ARG SEQRES 16 A 310 ARG TRP TYR GLU GLN GLN PRO ARG ASN TYR PRO LEU ARG SEQRES 17 A 310 ASP LEU PHE VAL HIS ALA GLU ASN ALA PRO PHE VAL GLN SEQRES 18 A 310 SER LEU LEU GLU ASN ALA ALA ARG ALA ILE ALA THR SER SEQRES 19 A 310 ILE ASN LEU PHE ASP PRO ASP ALA VAL ILE LEU GLY GLY SEQRES 20 A 310 GLY VAL MSE ASP MSE PRO ALA PHE PRO ARG GLU THR LEU SEQRES 21 A 310 VAL ALA MSE THR GLN LYS TYR LEU ARG ARG PRO LEU PRO SEQRES 22 A 310 HIS GLN VAL VAL ARG PHE ILE ALA ALA SER SER SER ASP SEQRES 23 A 310 PHE ASN GLY ALA GLN GLY ALA ALA ILE LEU ALA HIS GLN SEQRES 24 A 310 ARG PHE LEU PRO GLN PHE CYS ALA LYS ALA PRO MODRES 3HTV MSE A 13 MET SELENOMETHIONINE MODRES 3HTV MSE A 52 MET SELENOMETHIONINE MODRES 3HTV MSE A 69 MET SELENOMETHIONINE MODRES 3HTV MSE A 143 MET SELENOMETHIONINE MODRES 3HTV MSE A 149 MET SELENOMETHIONINE MODRES 3HTV MSE A 191 MET SELENOMETHIONINE MODRES 3HTV MSE A 249 MET SELENOMETHIONINE MODRES 3HTV MSE A 251 MET SELENOMETHIONINE MODRES 3HTV MSE A 262 MET SELENOMETHIONINE HET MSE A 13 8 HET MSE A 52 8 HET MSE A 69 8 HET MSE A 143 8 HET MSE A 149 8 HET MSE A 191 13 HET MSE A 249 8 HET MSE A 251 8 HET MSE A 262 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 HOH *139(H2 O) HELIX 1 1 THR A 37 ALA A 42 1 6 HELIX 2 2 GLY A 44 ASN A 61 1 18 HELIX 3 3 THR A 91 TYR A 96 1 6 HELIX 4 4 ASP A 97 ASN A 107 1 11 HELIX 5 5 ASP A 115 ASN A 127 1 13 HELIX 6 6 SER A 189 GLU A 198 1 10 HELIX 7 7 PRO A 205 ARG A 207 5 3 HELIX 8 8 ASP A 208 GLU A 214 1 7 HELIX 9 9 ALA A 216 ASP A 238 1 23 HELIX 10 10 PRO A 255 TYR A 266 1 12 HELIX 11 11 PHE A 286 LEU A 301 1 16 SHEET 1 A 5 THR A 29 ARG A 36 0 SHEET 2 A 5 HIS A 17 THR A 24 -1 N LEU A 22 O HIS A 31 SHEET 3 A 5 HIS A 5 MSE A 13 -1 N GLY A 10 O CYS A 21 SHEET 4 A 5 ALA A 62 PHE A 71 1 O ARG A 63 N VAL A 7 SHEET 5 A 5 VAL A 110 ARG A 114 1 O GLU A 111 N MSE A 69 SHEET 1 B 5 ALA A 152 TRP A 154 0 SHEET 2 B 5 MSE A 143 MSE A 149 -1 N VAL A 147 O TRP A 154 SHEET 3 B 5 VAL A 134 LEU A 139 -1 N TYR A 138 O GLY A 144 SHEET 4 B 5 ALA A 241 GLY A 245 1 O GLY A 245 N LEU A 139 SHEET 5 B 5 ARG A 277 ALA A 280 1 O ILE A 279 N LEU A 244 LINK C ASP A 12 N MSE A 13 1555 1555 1.32 LINK C MSE A 13 N GLY A 14 1555 1555 1.33 LINK C GLU A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N ILE A 53 1555 1555 1.33 LINK C VAL A 68 N MSE A 69 1555 1555 1.35 LINK C MSE A 69 N GLY A 70 1555 1555 1.35 LINK C GLY A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N GLY A 144 1555 1555 1.34 LINK C TRP A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ASN A 150 1555 1555 1.33 LINK C GLY A 190 N MSE A 191 1555 1555 1.34 LINK C MSE A 191 N ALA A 192 1555 1555 1.34 LINK C VAL A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N ASP A 250 1555 1555 1.33 LINK C ASP A 250 N MSE A 251 1555 1555 1.35 LINK C MSE A 251 N PRO A 252 1555 1555 1.35 LINK C ALA A 261 N MSE A 262 1555 1555 1.34 LINK C MSE A 262 N THR A 263 1555 1555 1.34 CISPEP 1 ARG A 269 PRO A 270 0 -0.40 CISPEP 2 LEU A 271 PRO A 272 0 1.39 CISPEP 3 LEU A 301 PRO A 302 0 -1.58 CRYST1 46.716 101.394 131.465 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007607 0.00000