data_3HYA # _entry.id 3HYA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HYA pdb_00003hya 10.2210/pdb3hya/pdb WWPDB D_1000179012 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1980-03-28 2 'Structure model' 1 1 2008-03-21 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2024-02-21 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly 14 4 'Structure model' pdbx_struct_conn_angle 15 4 'Structure model' pdbx_struct_oper_list 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_ref 19 4 'Structure model' struct_ref_seq 20 4 'Structure model' struct_site 21 4 'Structure model' struct_site_gen 22 5 'Structure model' chem_comp 23 5 'Structure model' chem_comp_atom 24 5 'Structure model' chem_comp_bond 25 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.label_asym_id' 2 4 'Structure model' '_atom_site.label_entity_id' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_chem_comp.type' 5 4 'Structure model' '_pdbx_database_status.process_site' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.value' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 5 'Structure model' '_chem_comp.pdbx_synonyms' 18 5 'Structure model' '_database_2.pdbx_DOI' 19 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HYA _pdbx_database_status.recvd_initial_deposition_date 1977-11-20 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Arnott, S.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Hyaluronic acid: molecular conformations and interactions in two sodium salts.' J.Mol.Biol. 95 359 384 1975 JMOBAK UK 0022-2836 0070 ? 1152059 '10.1016/0022-2836(75)90196-5' 1 ;Lals, a Linked-Atom Least-Squares Reciprocal-Space Refinement System Incorporating Stereochemical Restraints to Supplement Sparse Diffraction Data ; 'Acta Crystallogr.,Sect.A' 34 3 ? 1978 ACACEQ DK 0108-7673 0621 ? ? ? 2 ;Hyaluronic Acid, Structure of a Fully Extended 3-Fold Helical Sodium Salt and Comparison with the Less Extended 4-Fold Helical Forms ; J.Mol.Biol. 99 219 ? 1975 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guss, J.M.' 1 ? primary 'Hukins, D.W.' 2 ? primary 'Smith, P.J.' 3 ? primary 'Winter, W.T.' 4 ? primary 'Arnott, S.' 5 ? 1 'Smith, P.J.C.' 6 ? 1 'Arnott, S.' 7 ? 2 'Winter, W.T.' 8 ? 2 'Smith, P.J.C.' 9 ? 2 'Arnott, S.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid ; 1535.282 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 3 water nat water 18.015 8 ? ? ? ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # _pdbx_entity_branch.entity_id 1 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 1 DGlcpNAcb1-4DGlcpAb1-3DGlcpNAcb1-4DGlcpAb1-3DGlcpNAcb1-4DGlcpAb1-3DGlcpNAcb1-4DGlcpAa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 1 'WURCS=2.0/3,8,7/[a2122A-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2122A-1b_1-5]/1-2-3-2-3-2-3-2/a4-b1_b3-c1_c4-d1_d3-e1_e4-f1_f3-g1_g4-h1' WURCS PDB2Glycan 1.1.0 3 1 ;[][D-1-deoxy-GlcpA]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-GlcpNAc]{}}}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 1 2 NAG C1 O1 1 GCU O4 HO4 sing ? 2 1 3 BDP C1 O1 2 NAG O3 HO3 sing ? 3 1 4 NAG C1 O1 3 BDP O4 HO4 sing ? 4 1 5 BDP C1 O1 4 NAG O3 HO3 sing ? 5 1 6 NAG C1 O1 5 BDP O4 HO4 sing ? 6 1 7 BDP C1 O1 6 NAG O3 HO3 sing ? 7 1 8 NAG C1 O1 7 BDP O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BDP 'D-saccharide, beta linking' . 'beta-D-glucopyranuronic acid' 'beta-D-glucuronic acid; D-glucuronic acid; glucuronic acid' 'C6 H10 O7' 194.139 GCU 'D-saccharide, alpha linking' . 'alpha-D-glucopyranuronic acid' 'alpha-D-glucuronic acid; D-glucuronic acid; glucuronic acid' 'C6 H10 O7' 194.139 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpAb BDP 'COMMON NAME' GMML 1.0 'b-D-glucopyranuronic acid' BDP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpA BDP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcA GCU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpAa GCU 'COMMON NAME' GMML 1.0 'a-D-glucopyranuronic acid' GCU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpA GCU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcA NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero A 1 GCU 1 A GCU 1 A GCU 1 n A 1 NAG 2 A NAG 2 A NAG 2 n A 1 BDP 3 A BDP 3 A BDP 3 n A 1 NAG 4 A NAG 4 A NAG 4 n A 1 BDP 5 A BDP 5 A BDP 5 n A 1 NAG 6 A NAG 6 A NAG 6 n A 1 BDP 7 A BDP 7 A BDP 7 n A 1 NAG 8 A NAG 8 A NAG 8 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 9 9 NA NA A . C 2 NA 1 10 10 NA NA A . D 2 NA 1 11 11 NA NA A . E 2 NA 1 12 12 NA NA A . F 3 HOH 1 13 13 HOH HOH A . F 3 HOH 2 14 14 HOH HOH A . F 3 HOH 3 15 15 HOH HOH A . F 3 HOH 4 16 16 HOH HOH A . F 3 HOH 5 17 17 HOH HOH A . F 3 HOH 6 18 18 HOH HOH A . F 3 HOH 7 19 19 HOH HOH A . F 3 HOH 8 20 20 HOH HOH A . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id GCU _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id GCU _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O1 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal LINKED-ATOM refinement 'LEAST-SQUARES MODEL-BUILDING PROCEDURE' ? 1 LALS refinement . ? 2 # _cell.entry_id 3HYA _cell.length_a 11.530 _cell.length_b 9.890 _cell.length_c 33.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HYA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3HYA _exptl.method 'FIBER DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 3HYA _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low . _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE SPACE GROUP USED FOR THIS ANALYSIS WAS P 21 21 21 IN A NON STANDARD SETTING WITH THE 21 AXIS PARALLEL TO Z PASSING THROUGH X=0,Y=0 AND THE 21 AXIS PARALLEL TO X IN THE Z=0 PLANE. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'FIBER DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'FIBER DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 108 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 116 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3HYA _database_PDB_matrix.origx[1][1] .100000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] .100000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] .100000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3HYA _struct.title 'HYALURONIC ACID, MOLECULAR CONFORMATIONS AND INTERACTIONS IN TWO SODIUM SALTS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HYA _struct_keywords.pdbx_keywords 'TEXTURE OF CONNECTIVE TISSUE' _struct_keywords.text 'TEXTURE OF CONNECTIVE TISSUE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details ? _pdbx_struct_assembly.oligomeric_count ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;THE EIGHT-RESIDUE CHAIN SEGMENT GIVEN HERE WAS GENERATED FROM THE PUBLISHED FOUR-RESIDUE SEGMENT BY APPLICATION OF THE 21 SCREW AXIS AS DEFINED IN THE FOOTNOTE TO TABLE 8 OF THE PAPER CITED IN THE JRNL RECORDS ABOVE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GCU . O4 ? ? ? 1_555 A NAG . C1 ? ? A GCU 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale2 covale both ? A NAG . O3 ? ? ? 1_555 A BDP . C1 ? ? A NAG 2 A BDP 3 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale3 covale both ? A BDP . O4 ? ? ? 1_555 A NAG . C1 ? ? A BDP 3 A NAG 4 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale4 covale both ? A NAG . O3 ? ? ? 1_555 A BDP . C1 ? ? A NAG 4 A BDP 5 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale5 covale both ? A BDP . O4 ? ? ? 1_555 A NAG . C1 ? ? A BDP 5 A NAG 6 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale6 covale both ? A NAG . O3 ? ? ? 1_555 A BDP . C1 ? ? A NAG 6 A BDP 7 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale7 covale both ? A BDP . O4 ? ? ? 1_555 A NAG . C1 ? ? A BDP 7 A NAG 8 1_555 ? ? ? ? ? ? ? 1.389 ? ? metalc1 metalc ? ? A GCU . O6A ? ? ? 1_555 B NA . NA ? ? A GCU 1 A NA 9 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc2 metalc ? ? A BDP . O6B ? ? ? 1_555 C NA . NA ? ? A BDP 3 A NA 10 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc3 metalc ? ? A BDP . O6A ? ? ? 1_555 D NA . NA ? ? A BDP 5 A NA 11 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc4 metalc ? ? A BDP . O6B ? ? ? 1_555 E NA . NA ? ? A BDP 7 A NA 12 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc5 metalc ? ? B NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 9 A HOH 15 1_555 ? ? ? ? ? ? ? 2.807 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 10 A HOH 13 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc7 metalc ? ? C NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 10 A HOH 14 1_555 ? ? ? ? ? ? ? 2.670 ? ? metalc8 metalc ? ? D NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 11 A HOH 19 1_555 ? ? ? ? ? ? ? 2.807 ? ? metalc9 metalc ? ? E NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 12 A HOH 17 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc10 metalc ? ? E NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 12 A HOH 18 1_555 ? ? ? ? ? ? ? 2.670 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6A ? A GCU . ? A GCU 1 ? 1_555 NA ? B NA . ? A NA 9 ? 1_555 O ? F HOH . ? A HOH 15 ? 1_555 131.6 ? 2 O6B ? A BDP . ? A BDP 3 ? 1_555 NA ? C NA . ? A NA 10 ? 1_555 O ? F HOH . ? A HOH 13 ? 1_555 67.0 ? 3 O6B ? A BDP . ? A BDP 3 ? 1_555 NA ? C NA . ? A NA 10 ? 1_555 O ? F HOH . ? A HOH 14 ? 1_555 126.5 ? 4 O ? F HOH . ? A HOH 13 ? 1_555 NA ? C NA . ? A NA 10 ? 1_555 O ? F HOH . ? A HOH 14 ? 1_555 165.6 ? 5 O6A ? A BDP . ? A BDP 5 ? 1_555 NA ? D NA . ? A NA 11 ? 1_555 O ? F HOH . ? A HOH 19 ? 1_555 131.6 ? 6 O6B ? A BDP . ? A BDP 7 ? 1_555 NA ? E NA . ? A NA 12 ? 1_555 O ? F HOH . ? A HOH 17 ? 1_555 67.0 ? 7 O6B ? A BDP . ? A BDP 7 ? 1_555 NA ? E NA . ? A NA 12 ? 1_555 O ? F HOH . ? A HOH 18 ? 1_555 126.5 ? 8 O ? F HOH . ? A HOH 17 ? 1_555 NA ? E NA . ? A NA 12 ? 1_555 O ? F HOH . ? A HOH 18 ? 1_555 165.6 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 C5 A GCU 1 ? ? 1_555 H82 A NAG 4 ? ? 3_545 0.28 2 1 C5 A BDP 5 ? ? 1_555 H82 A NAG 8 ? ? 3_556 0.28 3 1 O2 A GCU 1 ? ? 1_555 C2 A NAG 4 ? ? 3_545 0.46 4 1 O2 A BDP 5 ? ? 1_555 C2 A NAG 8 ? ? 3_556 0.46 5 1 C1 A BDP 5 ? ? 1_555 C7 A NAG 8 ? ? 3_556 0.50 6 1 C1 A GCU 1 ? ? 1_555 C7 A NAG 4 ? ? 3_545 0.50 7 1 C6 A NAG 4 ? ? 1_555 C6 A NAG 8 ? ? 3_546 0.53 8 1 O4 A NAG 4 ? ? 1_555 NA A NA 9 ? ? 2_455 0.57 9 1 O4 A NAG 8 ? ? 1_555 NA A NA 11 ? ? 2_555 0.57 10 1 H5 A NAG 4 ? ? 1_555 H5 A NAG 8 ? ? 3_546 0.61 11 1 H3 A BDP 5 ? ? 1_555 O6A A BDP 7 ? ? 3_556 0.76 12 1 H3 A GCU 1 ? ? 1_555 O6A A BDP 3 ? ? 3_545 0.76 13 1 O5 A BDP 3 ? ? 1_555 O A HOH 18 ? ? 2_454 0.81 14 1 O5 A BDP 7 ? ? 1_555 O A HOH 14 ? ? 2_555 0.81 15 1 H5 A BDP 5 ? ? 1_555 H82 A NAG 8 ? ? 3_556 0.83 16 1 H5 A GCU 1 ? ? 1_555 H82 A NAG 4 ? ? 3_545 0.83 17 1 C2 A NAG 2 ? ? 1_555 O A HOH 13 ? ? 3_545 0.89 18 1 C2 A NAG 6 ? ? 1_555 O A HOH 17 ? ? 3_556 0.89 19 1 O5 A GCU 1 ? ? 1_555 C8 A NAG 4 ? ? 3_545 0.89 20 1 O5 A BDP 5 ? ? 1_555 C8 A NAG 8 ? ? 3_556 0.89 21 1 H62 A NAG 4 ? ? 1_555 H62 A NAG 8 ? ? 3_546 0.90 22 1 H3 A NAG 8 ? ? 1_555 O A HOH 19 ? ? 2_555 0.91 23 1 H3 A NAG 4 ? ? 1_555 O A HOH 15 ? ? 2_455 0.91 24 1 H62 A NAG 4 ? ? 1_555 C6 A NAG 8 ? ? 3_546 0.94 25 1 C6 A NAG 4 ? ? 1_555 H62 A NAG 8 ? ? 3_546 0.94 26 1 O5 A GCU 1 ? ? 1_555 C7 A NAG 4 ? ? 3_545 0.95 27 1 O5 A BDP 5 ? ? 1_555 C7 A NAG 8 ? ? 3_556 0.95 28 1 C4 A NAG 4 ? ? 1_555 O6 A NAG 8 ? ? 3_546 0.97 29 1 O6 A NAG 4 ? ? 1_555 C4 A NAG 8 ? ? 3_546 0.97 30 1 H2 A NAG 2 ? ? 1_555 O A HOH 13 ? ? 3_545 0.97 31 1 H2 A NAG 6 ? ? 1_555 O A HOH 17 ? ? 3_556 0.97 32 1 O7 A NAG 2 ? ? 1_555 O5 A NAG 6 ? ? 2_454 0.98 33 1 O5 A NAG 2 ? ? 1_555 O7 A NAG 6 ? ? 2_554 0.98 34 1 H61 A NAG 4 ? ? 1_555 H62 A NAG 8 ? ? 3_546 1.00 35 1 H62 A NAG 4 ? ? 1_555 H61 A NAG 8 ? ? 3_546 1.00 36 1 H1 A NAG 2 ? ? 1_555 H81 A NAG 6 ? ? 2_554 1.02 37 1 H81 A NAG 2 ? ? 1_555 H1 A NAG 6 ? ? 2_454 1.02 38 1 C1 A BDP 5 ? ? 1_555 N2 A NAG 8 ? ? 3_556 1.02 39 1 C1 A GCU 1 ? ? 1_555 N2 A NAG 4 ? ? 3_545 1.02 40 1 C2 A GCU 1 ? ? 1_555 N2 A NAG 4 ? ? 3_545 1.06 41 1 C2 A BDP 5 ? ? 1_555 N2 A NAG 8 ? ? 3_556 1.06 42 1 O2 A BDP 5 ? ? 1_555 C1 A NAG 8 ? ? 3_556 1.07 43 1 O2 A GCU 1 ? ? 1_555 C1 A NAG 4 ? ? 3_545 1.07 44 1 C5 A NAG 4 ? ? 1_555 O6 A NAG 8 ? ? 3_546 1.07 45 1 O6 A NAG 4 ? ? 1_555 C5 A NAG 8 ? ? 3_546 1.07 46 1 C5 A GCU 1 ? ? 1_555 C8 A NAG 4 ? ? 3_545 1.08 47 1 C5 A BDP 5 ? ? 1_555 C8 A NAG 8 ? ? 3_556 1.08 48 1 O3 A NAG 4 ? ? 1_555 O7 A NAG 8 ? ? 3_556 1.08 49 1 O7 A NAG 4 ? ? 1_555 O3 A NAG 8 ? ? 3_556 1.08 50 1 O4 A NAG 2 ? ? 1_555 O2 A BDP 7 ? ? 2_554 1.09 51 1 O2 A BDP 3 ? ? 1_555 O4 A NAG 6 ? ? 2_454 1.09 52 1 H62 A NAG 2 ? ? 1_555 H1 A BDP 3 ? ? 3_545 1.11 53 1 H62 A NAG 6 ? ? 1_555 H1 A BDP 7 ? ? 3_556 1.11 54 1 C1 A BDP 7 ? ? 1_555 O A HOH 14 ? ? 2_555 1.12 55 1 C1 A BDP 3 ? ? 1_555 O A HOH 18 ? ? 2_454 1.12 56 1 O6 A NAG 4 ? ? 1_555 H4 A NAG 8 ? ? 3_546 1.12 57 1 H4 A NAG 4 ? ? 1_555 O6 A NAG 8 ? ? 3_546 1.12 58 1 H1 A BDP 5 ? ? 1_555 N2 A NAG 8 ? ? 3_556 1.16 59 1 H1 A GCU 1 ? ? 1_555 N2 A NAG 4 ? ? 3_545 1.16 60 1 O2 A BDP 3 ? ? 1_555 C4 A NAG 6 ? ? 2_454 1.18 61 1 C4 A NAG 2 ? ? 1_555 O2 A BDP 7 ? ? 2_554 1.18 62 1 O3 A NAG 2 ? ? 1_555 O6 A NAG 6 ? ? 2_454 1.20 63 1 O6 A NAG 2 ? ? 1_555 O3 A NAG 6 ? ? 2_554 1.20 64 1 C1 A NAG 2 ? ? 1_555 O A HOH 13 ? ? 3_545 1.23 65 1 C1 A NAG 6 ? ? 1_555 O A HOH 17 ? ? 3_556 1.23 66 1 C6 A NAG 4 ? ? 1_555 C5 A NAG 8 ? ? 3_546 1.25 67 1 C5 A NAG 4 ? ? 1_555 C6 A NAG 8 ? ? 3_546 1.25 68 1 O5 A BDP 5 ? ? 1_555 H83 A NAG 8 ? ? 3_556 1.25 69 1 O5 A GCU 1 ? ? 1_555 H83 A NAG 4 ? ? 3_545 1.25 70 1 H3 A GCU 1 ? ? 1_555 HN2 A NAG 4 ? ? 3_545 1.27 71 1 H3 A BDP 5 ? ? 1_555 HN2 A NAG 8 ? ? 3_556 1.27 72 1 O2 A BDP 5 ? ? 1_555 H2 A NAG 8 ? ? 3_556 1.28 73 1 O2 A GCU 1 ? ? 1_555 H2 A NAG 4 ? ? 3_545 1.28 74 1 O6B A BDP 3 ? ? 1_555 H3 A BDP 7 ? ? 2_554 1.29 75 1 H3 A BDP 3 ? ? 1_555 O6B A BDP 7 ? ? 2_454 1.29 76 1 O3 A GCU 1 ? ? 1_555 O4 A BDP 3 ? ? 3_545 1.32 77 1 O3 A BDP 5 ? ? 1_555 O4 A BDP 7 ? ? 3_556 1.32 78 1 H61 A NAG 6 ? ? 1_555 H83 A NAG 6 ? ? 3_556 1.33 79 1 H61 A NAG 2 ? ? 1_555 H83 A NAG 2 ? ? 3_545 1.33 80 1 H5 A GCU 1 ? ? 1_555 C8 A NAG 4 ? ? 3_545 1.34 81 1 H5 A BDP 5 ? ? 1_555 C8 A NAG 8 ? ? 3_556 1.34 82 1 C2 A GCU 1 ? ? 1_555 C2 A NAG 4 ? ? 3_545 1.35 83 1 C2 A BDP 5 ? ? 1_555 C2 A NAG 8 ? ? 3_556 1.35 84 1 H3 A BDP 3 ? ? 1_555 NA A NA 12 ? ? 2_454 1.35 85 1 H3 A BDP 7 ? ? 1_555 NA A NA 10 ? ? 2_555 1.35 86 1 O3 A BDP 5 ? ? 1_555 C5 A BDP 7 ? ? 3_556 1.36 87 1 O3 A GCU 1 ? ? 1_555 C5 A BDP 3 ? ? 3_545 1.36 88 1 O3 A BDP 7 ? ? 1_555 O A HOH 20 ? ? 3_556 1.37 89 1 O3 A BDP 3 ? ? 1_555 O A HOH 16 ? ? 3_545 1.37 90 1 O3 A BDP 5 ? ? 1_555 H5 A BDP 7 ? ? 3_556 1.37 91 1 O3 A GCU 1 ? ? 1_555 H5 A BDP 3 ? ? 3_545 1.37 92 1 H1 A NAG 2 ? ? 1_555 C8 A NAG 6 ? ? 2_554 1.38 93 1 C8 A NAG 2 ? ? 1_555 H1 A NAG 6 ? ? 2_454 1.38 94 1 C1 A GCU 1 ? ? 1_555 O3 A NAG 8 ? ? 1_554 1.39 95 1 C1 A BDP 5 ? ? 1_555 O7 A NAG 8 ? ? 3_556 1.40 96 1 C1 A GCU 1 ? ? 1_555 O7 A NAG 4 ? ? 3_545 1.40 97 1 H1 A BDP 5 ? ? 1_555 C7 A NAG 8 ? ? 3_556 1.43 98 1 H1 A GCU 1 ? ? 1_555 C7 A NAG 4 ? ? 3_545 1.43 99 1 O3 A GCU 1 ? ? 1_555 C4 A BDP 3 ? ? 3_545 1.44 100 1 O3 A BDP 5 ? ? 1_555 C4 A BDP 7 ? ? 3_556 1.44 101 1 H5 A NAG 4 ? ? 1_555 C5 A NAG 8 ? ? 3_546 1.45 102 1 C5 A NAG 4 ? ? 1_555 H5 A NAG 8 ? ? 3_546 1.45 103 1 H82 A NAG 2 ? ? 1_555 O6B A BDP 5 ? ? 2_454 1.46 104 1 O6B A GCU 1 ? ? 1_555 H82 A NAG 6 ? ? 2_554 1.46 105 1 H61 A NAG 4 ? ? 1_555 C6 A NAG 8 ? ? 3_546 1.46 106 1 C6 A NAG 4 ? ? 1_555 H61 A NAG 8 ? ? 3_546 1.46 107 1 C5 A NAG 2 ? ? 1_555 O7 A NAG 6 ? ? 2_554 1.50 108 1 O7 A NAG 2 ? ? 1_555 C5 A NAG 6 ? ? 2_454 1.50 109 1 C2 A GCU 1 ? ? 1_555 H2 A NAG 4 ? ? 3_545 1.53 110 1 C2 A BDP 5 ? ? 1_555 H2 A NAG 8 ? ? 3_556 1.53 111 1 O2 A BDP 3 ? ? 1_555 C5 A NAG 6 ? ? 2_454 1.56 112 1 C5 A NAG 2 ? ? 1_555 O2 A BDP 7 ? ? 2_554 1.56 113 1 H1 A BDP 7 ? ? 1_555 NA A NA 10 ? ? 2_555 1.56 114 1 H1 A BDP 3 ? ? 1_555 NA A NA 12 ? ? 2_454 1.56 115 1 O2 A BDP 3 ? ? 1_555 H5 A NAG 6 ? ? 2_454 1.56 116 1 H5 A NAG 2 ? ? 1_555 O2 A BDP 7 ? ? 2_554 1.56 117 1 C7 A NAG 4 ? ? 1_555 O3 A NAG 8 ? ? 3_556 1.56 118 1 O3 A NAG 4 ? ? 1_555 C7 A NAG 8 ? ? 3_556 1.56 119 1 C3 A BDP 7 ? ? 1_555 O A HOH 20 ? ? 3_556 1.58 120 1 C3 A BDP 3 ? ? 1_555 O A HOH 16 ? ? 3_545 1.58 121 1 C6 A GCU 1 ? ? 1_555 H82 A NAG 4 ? ? 3_545 1.58 122 1 C6 A BDP 5 ? ? 1_555 H82 A NAG 8 ? ? 3_556 1.58 123 1 C5 A NAG 4 ? ? 1_555 C5 A NAG 8 ? ? 3_546 1.59 124 1 O5 A GCU 1 ? ? 1_555 O7 A NAG 4 ? ? 3_545 1.60 125 1 O5 A BDP 5 ? ? 1_555 O7 A NAG 8 ? ? 3_556 1.60 126 1 O6B A BDP 3 ? ? 1_555 C3 A BDP 7 ? ? 2_554 1.64 127 1 C3 A BDP 3 ? ? 1_555 O6B A BDP 7 ? ? 2_454 1.64 128 1 C3 A GCU 1 ? ? 1_555 O6A A BDP 3 ? ? 3_545 1.65 129 1 C3 A BDP 5 ? ? 1_555 O6A A BDP 7 ? ? 3_556 1.65 130 1 O6 A NAG 2 ? ? 1_555 C3 A NAG 6 ? ? 2_554 1.67 131 1 C3 A NAG 2 ? ? 1_555 O6 A NAG 6 ? ? 2_454 1.67 132 1 O3 A BDP 3 ? ? 1_555 O6B A BDP 7 ? ? 2_454 1.68 133 1 O6B A BDP 3 ? ? 1_555 O3 A BDP 7 ? ? 2_554 1.68 134 1 C3 A NAG 4 ? ? 1_555 O A HOH 15 ? ? 2_455 1.68 135 1 C3 A NAG 8 ? ? 1_555 O A HOH 19 ? ? 2_555 1.68 136 1 O3 A NAG 6 ? ? 1_555 O A HOH 14 ? ? 2_555 1.69 137 1 O3 A NAG 2 ? ? 1_555 O A HOH 18 ? ? 2_454 1.69 138 1 O4 A BDP 5 ? ? 1_555 O A HOH 17 ? ? 3_556 1.69 139 1 O4 A GCU 1 ? ? 1_555 O A HOH 13 ? ? 3_545 1.69 140 1 C2 A GCU 1 ? ? 1_555 C7 A NAG 4 ? ? 3_545 1.70 141 1 C2 A BDP 5 ? ? 1_555 C7 A NAG 8 ? ? 3_556 1.70 142 1 C2 A BDP 3 ? ? 1_555 O4 A NAG 6 ? ? 2_454 1.70 143 1 O4 A NAG 2 ? ? 1_555 C2 A BDP 7 ? ? 2_554 1.70 144 1 O2 A BDP 5 ? ? 1_555 N2 A NAG 8 ? ? 3_556 1.71 145 1 O2 A GCU 1 ? ? 1_555 N2 A NAG 4 ? ? 3_545 1.71 146 1 O7 A NAG 2 ? ? 1_555 C1 A NAG 6 ? ? 2_454 1.76 147 1 C1 A NAG 2 ? ? 1_555 O7 A NAG 6 ? ? 2_554 1.76 148 1 O2 A GCU 1 ? ? 1_555 C3 A NAG 4 ? ? 3_545 1.77 149 1 O2 A BDP 5 ? ? 1_555 C3 A NAG 8 ? ? 3_556 1.77 150 1 C6 A NAG 4 ? ? 1_555 O6 A NAG 8 ? ? 3_546 1.80 151 1 O6 A NAG 4 ? ? 1_555 C6 A NAG 8 ? ? 3_546 1.80 152 1 C3 A GCU 1 ? ? 1_555 N2 A NAG 4 ? ? 3_545 1.83 153 1 C3 A BDP 5 ? ? 1_555 N2 A NAG 8 ? ? 3_556 1.83 154 1 O5 A NAG 4 ? ? 1_555 O6 A NAG 8 ? ? 3_546 1.83 155 1 O6 A NAG 4 ? ? 1_555 O5 A NAG 8 ? ? 3_546 1.83 156 1 C1 A BDP 5 ? ? 1_555 C8 A NAG 8 ? ? 3_556 1.86 157 1 C1 A GCU 1 ? ? 1_555 C8 A NAG 4 ? ? 3_545 1.86 158 1 C3 A NAG 4 ? ? 1_555 O7 A NAG 8 ? ? 3_556 1.86 159 1 O7 A NAG 4 ? ? 1_555 C3 A NAG 8 ? ? 3_556 1.86 160 1 O3 A NAG 2 ? ? 1_555 C6 A NAG 6 ? ? 2_454 1.87 161 1 C6 A NAG 2 ? ? 1_555 O3 A NAG 6 ? ? 2_554 1.87 162 1 O5 A NAG 4 ? ? 1_555 C6 A NAG 8 ? ? 3_546 1.93 163 1 C6 A NAG 4 ? ? 1_555 O5 A NAG 8 ? ? 3_546 1.93 164 1 O2 A BDP 5 ? ? 1_555 O4 A BDP 7 ? ? 3_556 1.97 165 1 O2 A GCU 1 ? ? 1_555 O4 A BDP 3 ? ? 3_545 1.97 166 1 C2 A BDP 7 ? ? 1_555 O A HOH 20 ? ? 3_556 1.98 167 1 C2 A BDP 3 ? ? 1_555 O A HOH 16 ? ? 3_545 1.98 168 1 N2 A NAG 2 ? ? 1_555 O A HOH 13 ? ? 3_545 1.98 169 1 N2 A NAG 6 ? ? 1_555 O A HOH 17 ? ? 3_556 1.98 170 1 C3 A GCU 1 ? ? 1_555 O4 A BDP 3 ? ? 3_545 1.98 171 1 C3 A BDP 5 ? ? 1_555 O4 A BDP 7 ? ? 3_556 1.98 172 1 C3 A NAG 6 ? ? 1_555 O A HOH 14 ? ? 2_555 1.99 173 1 C3 A NAG 2 ? ? 1_555 O A HOH 18 ? ? 2_454 1.99 174 1 C6 A GCU 1 ? ? 1_555 C8 A NAG 4 ? ? 3_545 2.01 175 1 C6 A BDP 5 ? ? 1_555 C8 A NAG 8 ? ? 3_556 2.01 176 1 C4 A BDP 3 ? ? 1_555 O A HOH 16 ? ? 3_545 2.01 177 1 C4 A BDP 7 ? ? 1_555 O A HOH 20 ? ? 3_556 2.01 178 1 O3 A GCU 1 ? ? 1_555 C6 A BDP 3 ? ? 3_545 2.01 179 1 O3 A BDP 5 ? ? 1_555 C6 A BDP 7 ? ? 3_556 2.01 180 1 O5 A NAG 2 ? ? 1_555 O A HOH 13 ? ? 3_545 2.02 181 1 O5 A NAG 6 ? ? 1_555 O A HOH 17 ? ? 3_556 2.02 182 1 C5 A GCU 1 ? ? 1_555 C7 A NAG 4 ? ? 3_545 2.03 183 1 C5 A BDP 5 ? ? 1_555 C7 A NAG 8 ? ? 3_556 2.03 184 1 O2 A BDP 5 ? ? 1_555 O5 A NAG 8 ? ? 3_556 2.03 185 1 O2 A GCU 1 ? ? 1_555 O5 A NAG 4 ? ? 3_545 2.03 186 1 C1 A GCU 1 ? ? 1_555 C2 A NAG 4 ? ? 3_545 2.06 187 1 C1 A BDP 5 ? ? 1_555 C2 A NAG 8 ? ? 3_556 2.06 188 1 C4 A NAG 8 ? ? 1_555 O A HOH 19 ? ? 2_555 2.07 189 1 C4 A NAG 4 ? ? 1_555 O A HOH 15 ? ? 2_455 2.07 190 1 C2 A GCU 1 ? ? 1_555 C1 A NAG 4 ? ? 3_545 2.07 191 1 C2 A BDP 5 ? ? 1_555 C1 A NAG 8 ? ? 3_556 2.07 192 1 C2 A BDP 5 ? ? 1_555 O4 A BDP 7 ? ? 3_556 2.07 193 1 C2 A GCU 1 ? ? 1_555 O4 A BDP 3 ? ? 3_545 2.07 194 1 O2 A BDP 3 ? ? 1_555 C3 A NAG 6 ? ? 2_454 2.08 195 1 C3 A NAG 2 ? ? 1_555 O2 A BDP 7 ? ? 2_554 2.08 196 1 O3 A NAG 4 ? ? 1_555 O3 A NAG 8 ? ? 3_556 2.09 197 1 O5 A NAG 2 ? ? 1_555 C7 A NAG 6 ? ? 2_554 2.09 198 1 C7 A NAG 2 ? ? 1_555 O5 A NAG 6 ? ? 2_454 2.09 199 1 O3 A GCU 1 ? ? 1_555 O6A A BDP 3 ? ? 3_545 2.09 200 1 O3 A BDP 5 ? ? 1_555 O6A A BDP 7 ? ? 3_556 2.09 201 1 C5 A BDP 3 ? ? 1_555 O A HOH 18 ? ? 2_454 2.09 202 1 C5 A BDP 7 ? ? 1_555 O A HOH 14 ? ? 2_555 2.09 203 1 O4 A NAG 4 ? ? 1_555 O6 A NAG 8 ? ? 3_546 2.09 204 1 O6 A NAG 4 ? ? 1_555 O4 A NAG 8 ? ? 3_546 2.09 205 1 C8 A NAG 2 ? ? 1_555 O6B A BDP 5 ? ? 2_454 2.12 206 1 O6B A GCU 1 ? ? 1_555 C8 A NAG 6 ? ? 2_554 2.12 207 1 O6 A NAG 2 ? ? 1_555 C2 A NAG 6 ? ? 2_554 2.15 208 1 C2 A NAG 2 ? ? 1_555 O6 A NAG 6 ? ? 2_454 2.15 209 1 N2 A NAG 4 ? ? 1_555 O3 A NAG 8 ? ? 3_556 2.16 210 1 O3 A NAG 4 ? ? 1_555 N2 A NAG 8 ? ? 3_556 2.16 211 1 C4 A NAG 2 ? ? 1_555 O6 A NAG 6 ? ? 2_454 2.17 212 1 O6 A NAG 2 ? ? 1_555 C4 A NAG 6 ? ? 2_554 2.17 213 1 O5 A GCU 1 ? ? 1_555 N2 A NAG 4 ? ? 3_545 2.18 214 1 O5 A BDP 5 ? ? 1_555 N2 A NAG 8 ? ? 3_556 2.18 215 1 C3 A BDP 5 ? ? 1_555 C6 A BDP 7 ? ? 3_556 2.19 216 1 C3 A GCU 1 ? ? 1_555 C6 A BDP 3 ? ? 3_545 2.19 217 1 C8 A NAG 2 ? ? 1_555 C6 A BDP 5 ? ? 2_454 2.19 218 1 C6 A GCU 1 ? ? 1_555 C8 A NAG 6 ? ? 2_554 2.19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BDP C1 C N R 1 BDP C2 C N R 2 BDP C3 C N S 3 BDP C4 C N S 4 BDP C5 C N S 5 BDP C6 C N N 6 BDP O2 O N N 7 BDP O3 O N N 8 BDP O4 O N N 9 BDP O5 O N N 10 BDP O6A O N N 11 BDP O1 O N N 12 BDP O6B O N N 13 BDP H1 H N N 14 BDP H2 H N N 15 BDP H3 H N N 16 BDP H4 H N N 17 BDP H5 H N N 18 BDP HO2 H N N 19 BDP HO3 H N N 20 BDP HO4 H N N 21 BDP HO1 H N N 22 BDP HO6B H N N 23 GCU C1 C N S 24 GCU C2 C N R 25 GCU C3 C N S 26 GCU C4 C N S 27 GCU C5 C N S 28 GCU C6 C N N 29 GCU O1 O N N 30 GCU O2 O N N 31 GCU O3 O N N 32 GCU O4 O N N 33 GCU O5 O N N 34 GCU O6A O N N 35 GCU O6B O N N 36 GCU H1 H N N 37 GCU H2 H N N 38 GCU H3 H N N 39 GCU H4 H N N 40 GCU H5 H N N 41 GCU HO1 H N N 42 GCU HO2 H N N 43 GCU HO3 H N N 44 GCU HO4 H N N 45 GCU HO6B H N N 46 HOH O O N N 47 HOH H1 H N N 48 HOH H2 H N N 49 NA NA NA N N 50 NAG C1 C N R 51 NAG C2 C N R 52 NAG C3 C N R 53 NAG C4 C N S 54 NAG C5 C N R 55 NAG C6 C N N 56 NAG C7 C N N 57 NAG C8 C N N 58 NAG N2 N N N 59 NAG O1 O N N 60 NAG O3 O N N 61 NAG O4 O N N 62 NAG O5 O N N 63 NAG O6 O N N 64 NAG O7 O N N 65 NAG H1 H N N 66 NAG H2 H N N 67 NAG H3 H N N 68 NAG H4 H N N 69 NAG H5 H N N 70 NAG H61 H N N 71 NAG H62 H N N 72 NAG H81 H N N 73 NAG H82 H N N 74 NAG H83 H N N 75 NAG HN2 H N N 76 NAG HO1 H N N 77 NAG HO3 H N N 78 NAG HO4 H N N 79 NAG HO6 H N N 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDP C1 C2 sing N N 1 BDP C1 O5 sing N N 2 BDP C1 O1 sing N N 3 BDP C1 H1 sing N N 4 BDP C2 C3 sing N N 5 BDP C2 O2 sing N N 6 BDP C2 H2 sing N N 7 BDP C3 C4 sing N N 8 BDP C3 O3 sing N N 9 BDP C3 H3 sing N N 10 BDP C4 C5 sing N N 11 BDP C4 O4 sing N N 12 BDP C4 H4 sing N N 13 BDP C5 C6 sing N N 14 BDP C5 O5 sing N N 15 BDP C5 H5 sing N N 16 BDP C6 O6A doub N N 17 BDP C6 O6B sing N N 18 BDP O2 HO2 sing N N 19 BDP O3 HO3 sing N N 20 BDP O4 HO4 sing N N 21 BDP O1 HO1 sing N N 22 BDP O6B HO6B sing N N 23 GCU C1 C2 sing N N 24 GCU C1 O1 sing N N 25 GCU C1 O5 sing N N 26 GCU C1 H1 sing N N 27 GCU C2 C3 sing N N 28 GCU C2 O2 sing N N 29 GCU C2 H2 sing N N 30 GCU C3 C4 sing N N 31 GCU C3 O3 sing N N 32 GCU C3 H3 sing N N 33 GCU C4 C5 sing N N 34 GCU C4 O4 sing N N 35 GCU C4 H4 sing N N 36 GCU C5 C6 sing N N 37 GCU C5 O5 sing N N 38 GCU C5 H5 sing N N 39 GCU C6 O6A doub N N 40 GCU C6 O6B sing N N 41 GCU O1 HO1 sing N N 42 GCU O2 HO2 sing N N 43 GCU O3 HO3 sing N N 44 GCU O4 HO4 sing N N 45 GCU O6B HO6B sing N N 46 HOH O H1 sing N N 47 HOH O H2 sing N N 48 NAG C1 C2 sing N N 49 NAG C1 O1 sing N N 50 NAG C1 O5 sing N N 51 NAG C1 H1 sing N N 52 NAG C2 C3 sing N N 53 NAG C2 N2 sing N N 54 NAG C2 H2 sing N N 55 NAG C3 C4 sing N N 56 NAG C3 O3 sing N N 57 NAG C3 H3 sing N N 58 NAG C4 C5 sing N N 59 NAG C4 O4 sing N N 60 NAG C4 H4 sing N N 61 NAG C5 C6 sing N N 62 NAG C5 O5 sing N N 63 NAG C5 H5 sing N N 64 NAG C6 O6 sing N N 65 NAG C6 H61 sing N N 66 NAG C6 H62 sing N N 67 NAG C7 C8 sing N N 68 NAG C7 N2 sing N N 69 NAG C7 O7 doub N N 70 NAG C8 H81 sing N N 71 NAG C8 H82 sing N N 72 NAG C8 H83 sing N N 73 NAG N2 HN2 sing N N 74 NAG O1 HO1 sing N N 75 NAG O3 HO3 sing N N 76 NAG O4 HO4 sing N N 77 NAG O6 HO6 sing N N 78 # _database_PDB_tvect.id 1 _database_PDB_tvect.vector[1] 0.00000 _database_PDB_tvect.vector[2] 0.00000 _database_PDB_tvect.vector[3] 33.86000 _database_PDB_tvect.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 1 GCU 1 n 1 NAG 2 n 1 BDP 3 n 1 NAG 4 n 1 BDP 5 n 1 NAG 6 n 1 BDP 7 n 1 NAG 8 n # _atom_sites.entry_id 3HYA _atom_sites.fract_transf_matrix[1][1] 0.086730 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.101112 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029533 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O # loop_