HEADER TRANSFERASE 22-JUN-09 3HYH TITLE CRYSTAL STRUCTURE OF THE PROTEIN KINASE DOMAIN OF YEAST AMP-ACTIVATED TITLE 2 PROTEIN KINASE SNF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON CATABOLITE-DEREPRESSING PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CAT1, CCR1, D8035.20, GLC2, PAS14, SNF1, YDR477W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS KINASE DOMAIN, TRANSFERASE, ATP-BINDING, CARBOHYDRATE METABOLISM, KEYWDS 2 KINASE, MEMBRANE, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,G.A.AMODEO,Y.BAI,L.TONG REVDAT 4 21-FEB-24 3HYH 1 REMARK REVDAT 3 01-NOV-17 3HYH 1 REMARK REVDAT 2 13-JUL-11 3HYH 1 VERSN REVDAT 1 30-JUN-09 3HYH 0 SPRSDE 30-JUN-09 3HYH 3FAM JRNL AUTH M.J.RUDOLPH,G.A.AMODEO,Y.BAI,L.TONG JRNL TITL CRYSTAL STRUCTURE OF THE PROTEIN KINASE DOMAIN OF YEAST JRNL TITL 2 AMP-ACTIVATED PROTEIN KINASE SNF1 JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 337 1224 2005 JRNL REFN ISSN 0006-291X JRNL PMID 16236260 JRNL DOI 10.1016/J.BBRC.2005.09.181 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.431 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3931 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5299 ; 1.229 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.374 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;37.326 ;23.799 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 744 ;16.530 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.439 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2870 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1759 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2642 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.132 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2455 ; 0.833 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3820 ; 1.073 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1695 ; 1.562 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1479 ; 2.377 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 48 A 315 6 REMARK 3 1 B 48 B 315 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1865 ; NULL ; NULL REMARK 3 LOOSE THERMAL 1 A (A**2): 1865 ; NULL ; NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6802 33.9391 61.5094 REMARK 3 T TENSOR REMARK 3 T11: -0.2292 T22: 0.0719 REMARK 3 T33: -0.0478 T12: 0.0017 REMARK 3 T13: 0.0391 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 3.5795 L22: 2.6166 REMARK 3 L33: 3.0679 L12: 1.3943 REMARK 3 L13: -1.4782 L23: -0.8210 REMARK 3 S TENSOR REMARK 3 S11: -0.1976 S12: -0.2021 S13: -0.4769 REMARK 3 S21: -0.1034 S22: 0.0369 S23: -0.0580 REMARK 3 S31: 0.0709 S32: -0.6516 S33: 0.1607 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 136 B 315 REMARK 3 ORIGIN FOR THE GROUP (A): 62.0971 47.5390 53.5342 REMARK 3 T TENSOR REMARK 3 T11: -0.0028 T22: -0.1495 REMARK 3 T33: -0.1235 T12: -0.0352 REMARK 3 T13: -0.0454 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 4.1301 L22: 0.5683 REMARK 3 L33: 4.0468 L12: 0.5864 REMARK 3 L13: 2.6527 L23: 0.6676 REMARK 3 S TENSOR REMARK 3 S11: -0.4019 S12: 0.2667 S13: -0.0500 REMARK 3 S21: -0.1431 S22: 0.1266 S23: -0.0543 REMARK 3 S31: -0.5808 S32: 0.1793 S33: 0.2753 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 91.2489 30.8360 72.0716 REMARK 3 T TENSOR REMARK 3 T11: -0.2328 T22: 0.0534 REMARK 3 T33: 0.0788 T12: -0.0395 REMARK 3 T13: 0.0745 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 4.6282 L22: 0.6053 REMARK 3 L33: 3.0452 L12: -1.0560 REMARK 3 L13: -2.0027 L23: 0.7347 REMARK 3 S TENSOR REMARK 3 S11: -0.1684 S12: 0.3866 S13: -0.4722 REMARK 3 S21: 0.0707 S22: -0.0765 S23: -0.1581 REMARK 3 S31: 0.2286 S32: 0.3359 S33: 0.2449 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 70.5534 38.8586 85.6162 REMARK 3 T TENSOR REMARK 3 T11: -0.0297 T22: -0.1373 REMARK 3 T33: -0.0776 T12: -0.0070 REMARK 3 T13: -0.0190 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.0409 L22: 1.2655 REMARK 3 L33: 2.0935 L12: -0.2164 REMARK 3 L13: -0.0918 L23: -0.4876 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.0511 S13: 0.0002 REMARK 3 S21: 0.0698 S22: -0.0481 S23: -0.0824 REMARK 3 S31: -0.1548 S32: -0.0821 S33: 0.0790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31518 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS (PH 8.5), 25% (W/V) REMARK 280 PEG3350, AND 300 MM (NH4)2SO4, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.51400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.84950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.56850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.84950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.51400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.56850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 41 REMARK 465 PRO A 42 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 LEU A 46 REMARK 465 ALA A 47 REMARK 465 ASP A 48 REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 HIS A 51 REMARK 465 ILE A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 64 REMARK 465 SER A 65 REMARK 465 PHE A 66 REMARK 465 VAL A 90 REMARK 465 LEU A 91 REMARK 465 ALA A 92 REMARK 465 LYS A 93 REMARK 465 SER A 94 REMARK 465 ASP A 95 REMARK 465 ASN A 200 REMARK 465 ILE A 201 REMARK 465 MET A 202 REMARK 465 THR A 203 REMARK 465 ASP A 204 REMARK 465 GLY A 205 REMARK 465 ASN A 206 REMARK 465 PHE A 207 REMARK 465 LEU A 208 REMARK 465 LYS A 209 REMARK 465 THR A 210 REMARK 465 SER A 211 REMARK 465 CYS A 212 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 ASN B 41 REMARK 465 PRO B 42 REMARK 465 LYS B 43 REMARK 465 SER B 44 REMARK 465 SER B 45 REMARK 465 LEU B 46 REMARK 465 ALA B 47 REMARK 465 ASP B 48 REMARK 465 GLY B 49 REMARK 465 ALA B 50 REMARK 465 HIS B 51 REMARK 465 ILE B 52 REMARK 465 GLY B 53 REMARK 465 GLY B 64 REMARK 465 SER B 65 REMARK 465 PHE B 66 REMARK 465 GLY B 67 REMARK 465 LEU B 91 REMARK 465 ALA B 92 REMARK 465 LYS B 93 REMARK 465 SER B 94 REMARK 465 ASP B 95 REMARK 465 ASN B 200 REMARK 465 ILE B 201 REMARK 465 MET B 202 REMARK 465 THR B 203 REMARK 465 ASP B 204 REMARK 465 GLY B 205 REMARK 465 ASN B 206 REMARK 465 PHE B 207 REMARK 465 LEU B 208 REMARK 465 LYS B 209 REMARK 465 THR B 210 REMARK 465 SER B 211 REMARK 465 CYS B 212 REMARK 465 GLY B 213 REMARK 465 SER B 214 REMARK 465 GLY B 225 REMARK 465 LYS B 226 REMARK 465 LEU B 227 REMARK 465 TYR B 228 REMARK 465 ALA B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 179 OD1 ASN A 182 1.89 REMARK 500 OE1 GLU B 103 O ASP B 195 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 89 C LYS A 89 O 0.218 REMARK 500 VAL B 90 C VAL B 90 O 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 89 CA - C - O ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 88 102.94 -57.97 REMARK 500 ASP A 177 28.98 -141.72 REMARK 500 ASP A 195 -61.58 -126.17 REMARK 500 LEU A 227 117.50 64.89 REMARK 500 GLN B 56 77.22 60.16 REMARK 500 VAL B 58 -72.81 -97.41 REMARK 500 ASN B 87 -102.72 -149.11 REMARK 500 LYS B 88 -73.90 -21.00 REMARK 500 HIS B 171 32.95 -99.16 REMARK 500 LYS B 172 18.66 51.51 REMARK 500 ARG B 176 -7.04 67.86 REMARK 500 ASP B 195 -49.92 -134.22 REMARK 500 LEU B 287 50.54 -94.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 3HYH A 41 315 UNP P06782 SNF1_YEAST 41 315 DBREF 3HYH B 41 315 UNP P06782 SNF1_YEAST 41 315 SEQRES 1 A 275 ASN PRO LYS SER SER LEU ALA ASP GLY ALA HIS ILE GLY SEQRES 2 A 275 ASN TYR GLN ILE VAL LYS THR LEU GLY GLU GLY SER PHE SEQRES 3 A 275 GLY LYS VAL LYS LEU ALA TYR HIS THR THR THR GLY GLN SEQRES 4 A 275 LYS VAL ALA LEU LYS ILE ILE ASN LYS LYS VAL LEU ALA SEQRES 5 A 275 LYS SER ASP MET GLN GLY ARG ILE GLU ARG GLU ILE SER SEQRES 6 A 275 TYR LEU ARG LEU LEU ARG HIS PRO HIS ILE ILE LYS LEU SEQRES 7 A 275 TYR ASP VAL ILE LYS SER LYS ASP GLU ILE ILE MET VAL SEQRES 8 A 275 ILE GLU TYR ALA GLY ASN GLU LEU PHE ASP TYR ILE VAL SEQRES 9 A 275 GLN ARG ASP LYS MET SER GLU GLN GLU ALA ARG ARG PHE SEQRES 10 A 275 PHE GLN GLN ILE ILE SER ALA VAL GLU TYR CYS HIS ARG SEQRES 11 A 275 HIS LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN LEU SEQRES 12 A 275 LEU LEU ASP GLU HIS LEU ASN VAL LYS ILE ALA ASP PHE SEQRES 13 A 275 GLY LEU SER ASN ILE MET THR ASP GLY ASN PHE LEU LYS SEQRES 14 A 275 THR SER CYS GLY SER PRO ASN TYR ALA ALA PRO GLU VAL SEQRES 15 A 275 ILE SER GLY LYS LEU TYR ALA GLY PRO GLU VAL ASP VAL SEQRES 16 A 275 TRP SER CYS GLY VAL ILE LEU TYR VAL MET LEU CYS ARG SEQRES 17 A 275 ARG LEU PRO PHE ASP ASP GLU SER ILE PRO VAL LEU PHE SEQRES 18 A 275 LYS ASN ILE SER ASN GLY VAL TYR THR LEU PRO LYS PHE SEQRES 19 A 275 LEU SER PRO GLY ALA ALA GLY LEU ILE LYS ARG MET LEU SEQRES 20 A 275 ILE VAL ASN PRO LEU ASN ARG ILE SER ILE HIS GLU ILE SEQRES 21 A 275 MET GLN ASP ASP TRP PHE LYS VAL ASP LEU PRO GLU TYR SEQRES 22 A 275 LEU LEU SEQRES 1 B 275 ASN PRO LYS SER SER LEU ALA ASP GLY ALA HIS ILE GLY SEQRES 2 B 275 ASN TYR GLN ILE VAL LYS THR LEU GLY GLU GLY SER PHE SEQRES 3 B 275 GLY LYS VAL LYS LEU ALA TYR HIS THR THR THR GLY GLN SEQRES 4 B 275 LYS VAL ALA LEU LYS ILE ILE ASN LYS LYS VAL LEU ALA SEQRES 5 B 275 LYS SER ASP MET GLN GLY ARG ILE GLU ARG GLU ILE SER SEQRES 6 B 275 TYR LEU ARG LEU LEU ARG HIS PRO HIS ILE ILE LYS LEU SEQRES 7 B 275 TYR ASP VAL ILE LYS SER LYS ASP GLU ILE ILE MET VAL SEQRES 8 B 275 ILE GLU TYR ALA GLY ASN GLU LEU PHE ASP TYR ILE VAL SEQRES 9 B 275 GLN ARG ASP LYS MET SER GLU GLN GLU ALA ARG ARG PHE SEQRES 10 B 275 PHE GLN GLN ILE ILE SER ALA VAL GLU TYR CYS HIS ARG SEQRES 11 B 275 HIS LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN LEU SEQRES 12 B 275 LEU LEU ASP GLU HIS LEU ASN VAL LYS ILE ALA ASP PHE SEQRES 13 B 275 GLY LEU SER ASN ILE MET THR ASP GLY ASN PHE LEU LYS SEQRES 14 B 275 THR SER CYS GLY SER PRO ASN TYR ALA ALA PRO GLU VAL SEQRES 15 B 275 ILE SER GLY LYS LEU TYR ALA GLY PRO GLU VAL ASP VAL SEQRES 16 B 275 TRP SER CYS GLY VAL ILE LEU TYR VAL MET LEU CYS ARG SEQRES 17 B 275 ARG LEU PRO PHE ASP ASP GLU SER ILE PRO VAL LEU PHE SEQRES 18 B 275 LYS ASN ILE SER ASN GLY VAL TYR THR LEU PRO LYS PHE SEQRES 19 B 275 LEU SER PRO GLY ALA ALA GLY LEU ILE LYS ARG MET LEU SEQRES 20 B 275 ILE VAL ASN PRO LEU ASN ARG ILE SER ILE HIS GLU ILE SEQRES 21 B 275 MET GLN ASP ASP TRP PHE LYS VAL ASP LEU PRO GLU TYR SEQRES 22 B 275 LEU LEU FORMUL 3 HOH *107(H2 O) HELIX 1 1 MET A 96 LEU A 110 1 15 HELIX 2 2 LEU A 139 ARG A 146 1 8 HELIX 3 3 SER A 150 HIS A 171 1 22 HELIX 4 4 ALA A 219 SER A 224 1 6 HELIX 5 5 PRO A 231 ARG A 248 1 18 HELIX 6 6 SER A 256 GLY A 267 1 12 HELIX 7 7 SER A 276 LEU A 287 1 12 HELIX 8 8 ASN A 290 ARG A 294 5 5 HELIX 9 9 SER A 296 ASP A 303 1 8 HELIX 10 10 ASP A 303 VAL A 308 1 6 HELIX 11 11 PRO A 311 LEU A 315 5 5 HELIX 12 12 MET B 96 LEU B 110 1 15 HELIX 13 13 LEU B 139 GLN B 145 1 7 HELIX 14 14 SER B 150 HIS B 171 1 22 HELIX 15 15 LYS B 179 GLU B 181 5 3 HELIX 16 16 ALA B 219 SER B 224 1 6 HELIX 17 17 PRO B 231 ARG B 248 1 18 HELIX 18 18 SER B 256 GLY B 267 1 12 HELIX 19 19 SER B 276 LEU B 287 1 12 HELIX 20 20 SER B 296 GLN B 302 1 7 HELIX 21 21 ASP B 303 VAL B 308 1 6 HELIX 22 22 PRO B 311 LEU B 315 5 5 SHEET 1 A 5 GLN A 56 GLY A 62 0 SHEET 2 A 5 VAL A 69 TYR A 73 -1 O LEU A 71 N LYS A 59 SHEET 3 A 5 LYS A 80 ASN A 87 -1 O VAL A 81 N ALA A 72 SHEET 4 A 5 GLU A 127 GLU A 133 -1 O ILE A 132 N ALA A 82 SHEET 5 A 5 LEU A 118 LYS A 123 -1 N ILE A 122 O ILE A 129 SHEET 1 B 3 ASN A 137 GLU A 138 0 SHEET 2 B 3 LEU A 183 LEU A 185 -1 O LEU A 185 N ASN A 137 SHEET 3 B 3 VAL A 191 ILE A 193 -1 O LYS A 192 N LEU A 184 SHEET 1 C 4 VAL B 69 TYR B 73 0 SHEET 2 C 4 LYS B 80 ILE B 86 -1 O VAL B 81 N ALA B 72 SHEET 3 C 4 ILE B 128 GLU B 133 -1 O ILE B 132 N ALA B 82 SHEET 4 C 4 LEU B 118 LYS B 123 -1 N ILE B 122 O ILE B 129 SHEET 1 D 3 ASN B 137 GLU B 138 0 SHEET 2 D 3 LEU B 183 LEU B 185 -1 O LEU B 185 N ASN B 137 SHEET 3 D 3 VAL B 191 ILE B 193 -1 O LYS B 192 N LEU B 184 CRYST1 71.028 75.137 113.699 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008795 0.00000