HEADER TRANSCRIPTION REGULATOR 22-JUN-09 3HYJ TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL LAGLIDADG DOMAIN OF DUF199/WHIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DUF199/WHIA; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, GENERATED BY PROTEOLYTIC DIGESTION OF COMPND 5 THE FULL-LENGTH PROTEIN (UNP RESIDUES 1 TO 198); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: MSB8, TM_1708; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS LAGLIDADG, HOMING ENDONUCLEASE, HELIX-TURN-HELIX, HTH, TRANSCRIPTION KEYWDS 2 REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR B.K.KAISER,M.C.CLIFTON,B.W.SHEN,B.L.STODDARD REVDAT 4 21-FEB-24 3HYJ 1 REMARK REVDAT 3 13-JUL-11 3HYJ 1 VERSN REVDAT 2 10-NOV-09 3HYJ 1 JRNL REVDAT 1 01-SEP-09 3HYJ 0 JRNL AUTH B.K.KAISER,M.C.CLIFTON,B.W.SHEN,B.L.STODDARD JRNL TITL THE STRUCTURE OF A BACTERIAL DUF199/WHIA PROTEIN: JRNL TITL 2 DOMESTICATION OF AN INVASIVE ENDONUCLEASE. JRNL REF STRUCTURE V. 17 1368 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19836336 JRNL DOI 10.1016/J.STR.2009.08.008 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 13375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2994 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.894 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3061 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2076 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4131 ; 1.456 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5051 ; 1.076 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 7.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;39.456 ;23.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;18.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3347 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 656 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1911 ; 0.535 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 775 ; 0.085 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3069 ; 1.005 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 1.416 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1061 ; 2.425 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2170 30.1210 17.2340 REMARK 3 T TENSOR REMARK 3 T11: .2875 T22: .0107 REMARK 3 T33: .2001 T12: -.0296 REMARK 3 T13: .1022 T23: -.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.0585 L22: 4.8009 REMARK 3 L33: 3.1656 L12: .6528 REMARK 3 L13: -.0145 L23: .2190 REMARK 3 S TENSOR REMARK 3 S11: .1008 S12: .0533 S13: .0974 REMARK 3 S21: -.3148 S22: -.0020 S23: -.0029 REMARK 3 S31: -.3129 S32: .0283 S33: -.0988 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5940 24.3140 33.1440 REMARK 3 T TENSOR REMARK 3 T11: .2503 T22: .0333 REMARK 3 T33: .1918 T12: -.0172 REMARK 3 T13: .0147 T23: -.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.4816 L22: 3.5657 REMARK 3 L33: 3.9278 L12: -.1686 REMARK 3 L13: .0291 L23: 1.5557 REMARK 3 S TENSOR REMARK 3 S11: .0032 S12: -.2425 S13: -.1681 REMARK 3 S21: .0881 S22: .1812 S23: -.1892 REMARK 3 S31: .0800 S32: .0654 S33: -.1844 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 77 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9460 41.3220 8.0470 REMARK 3 T TENSOR REMARK 3 T11: .3095 T22: .0478 REMARK 3 T33: .1458 T12: -.0439 REMARK 3 T13: .0080 T23: -.0124 REMARK 3 L TENSOR REMARK 3 L11: 4.2037 L22: 2.4601 REMARK 3 L33: 3.8252 L12: .5065 REMARK 3 L13: -.6166 L23: .5962 REMARK 3 S TENSOR REMARK 3 S11: -.0072 S12: -.2669 S13: .0027 REMARK 3 S21: .3535 S22: .1144 S23: -.0147 REMARK 3 S31: .1031 S32: .2112 S33: -.1072 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 78 D 193 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1680 41.2960 -5.2430 REMARK 3 T TENSOR REMARK 3 T11: .3348 T22: .0127 REMARK 3 T33: .2251 T12: .0023 REMARK 3 T13: .0004 T23: -.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.1119 L22: 2.9346 REMARK 3 L33: 3.9156 L12: .0839 REMARK 3 L13: -1.0741 L23: .6279 REMARK 3 S TENSOR REMARK 3 S11: -.0126 S12: -.0188 S13: .0325 REMARK 3 S21: -.1022 S22: .1378 S23: .0178 REMARK 3 S31: -.1076 S32: .1751 S33: -.1252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : R-AXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : H REMARK 200 DATA SCALING SOFTWARE : D*TREK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14107 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 9.0, 20% ETHANOL, 200 MM REMARK 280 NACL. CRYSTALS OF THE N-TERMINAL DOMAIN WERE GENERATED BY THE REMARK 280 ADDITION OF TRYPSIN TO THE FULL-LENGTH PROTEIN JUST PRIOR TO REMARK 280 SETTING CRYSTAL DROPS., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K, PH 9.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.22400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.71300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.94950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.71300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.22400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.94950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 44 REMARK 465 LYS A 45 REMARK 465 SER A 46 REMARK 465 ASN A 83 REMARK 465 ILE A 84 REMARK 465 LYS A 85 REMARK 465 LYS A 86 REMARK 465 ILE A 194 REMARK 465 ASP A 195 REMARK 465 ARG A 196 REMARK 465 ILE A 197 REMARK 465 VAL A 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 6 NH1 NH2 REMARK 470 ARG A 7 CZ NH1 NH2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 67 CD CE NZ REMARK 470 ILE A 77 CD1 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 SER A 81 OG REMARK 470 HIS A 82 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 129 CZ NH1 NH2 REMARK 470 GLU A 142 OE1 OE2 REMARK 470 LYS A 149 CE NZ REMARK 470 ILE A 161 CD1 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 LYS A 173 CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 GLN A 188 CD OE1 NE2 REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 MET D 1 CG SD CE REMARK 470 ARG D 6 CD NE CZ NH1 NH2 REMARK 470 ARG D 7 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 29 CD1 REMARK 470 LEU D 42 CG CD1 CD2 REMARK 470 ASP D 43 CG OD1 OD2 REMARK 470 VAL D 44 CG1 CG2 REMARK 470 LYS D 45 CD CE NZ REMARK 470 LYS D 67 CE NZ REMARK 470 LYS D 71 CD CE NZ REMARK 470 LYS D 80 CG CD CE NZ REMARK 470 SER D 81 OG REMARK 470 ILE D 84 CD1 REMARK 470 LYS D 85 CG CD CE NZ REMARK 470 ARG D 87 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 88 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 90 CD CE NZ REMARK 470 SER D 96 OG REMARK 470 PHE D 99 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET D 100 CG SD CE REMARK 470 VAL D 101 CG1 CG2 REMARK 470 GLU D 103 CG CD OE1 OE2 REMARK 470 GLU D 142 CG CD OE1 OE2 REMARK 470 ILE D 161 CD1 REMARK 470 ARG D 165 CZ NH1 NH2 REMARK 470 ASN D 166 CG OD1 ND2 REMARK 470 ASP D 195 CG OD1 OD2 REMARK 470 ARG D 196 NE CZ NH1 NH2 REMARK 470 ILE D 197 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 131 138.07 -172.87 REMARK 500 HIS A 133 118.21 -163.04 REMARK 500 GLU A 192 80.80 -58.34 REMARK 500 ARG D 39 24.72 -150.05 REMARK 500 MET D 100 69.56 -115.48 REMARK 500 HIS D 131 138.14 -170.02 REMARK 500 HIS D 133 116.47 -163.81 REMARK 500 LEU D 191 18.17 -37.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 199 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 131 NE2 REMARK 620 2 HIS A 133 ND1 105.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3731 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 3731 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 199 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HYI RELATED DB: PDB REMARK 900 FULL-LENGTH DUF199/WHIA DBREF 3HYJ A 1 198 UNP Q9X234 Q9X234_THEMA 1 198 DBREF 3HYJ D 1 198 UNP Q9X234 Q9X234_THEMA 1 198 SEQRES 1 A 198 MET VAL SER LEU LEU ARG ARG THR PHE SER GLU GLU ILE SEQRES 2 A 198 LYS GLU GLU LEU VAL ASN VAL PRO PHE GLY SER ARG GLU SEQRES 3 A 198 GLU VAL ILE SER GLU LEU LEU GLY PHE ILE LYS ALA ARG SEQRES 4 A 198 GLY ASP LEU ASP VAL LYS SER ARG HIS ILE VAL PHE SER SEQRES 5 A 198 LEU HIS SER PHE ALA ALA SER ARG ARG LEU LEU ASN LEU SEQRES 6 A 198 MET LYS TYR LEU SER LYS PRO VAL SER GLU ILE ILE VAL SEQRES 7 A 198 GLU LYS SER HIS ASN ILE LYS LYS ARG TYR ILE LYS ILE SEQRES 8 A 198 THR ALA GLU TYR SER GLU SER PHE MET VAL ILE GLU PRO SEQRES 9 A 198 PHE PHE ASP VAL ALA LEU PHE VAL SER PHE LEU ARG GLY SEQRES 10 A 198 LEU PHE LEU SER GLY GLY SER MET THR ASN PRO ARG TYR SEQRES 11 A 198 HIS TYR HIS LEU GLU ILE ASN LEU PHE GLU GLU GLU THR SEQRES 12 A 198 LEU ALA LEU THR ARG LYS SER LEU LYS ASP PHE PHE ASN SEQRES 13 A 198 ILE ASN ALA GLY ILE ILE GLU LEU ARG ASN THR ARG LYS SEQRES 14 A 198 LEU TYR ILE LYS SER ILE LYS ASP ILE LEU VAL PHE LEU SEQRES 15 A 198 GLU ALA ILE GLY VAL GLN ARG LYS LEU GLU GLU ILE ASP SEQRES 16 A 198 ARG ILE VAL SEQRES 1 D 198 MET VAL SER LEU LEU ARG ARG THR PHE SER GLU GLU ILE SEQRES 2 D 198 LYS GLU GLU LEU VAL ASN VAL PRO PHE GLY SER ARG GLU SEQRES 3 D 198 GLU VAL ILE SER GLU LEU LEU GLY PHE ILE LYS ALA ARG SEQRES 4 D 198 GLY ASP LEU ASP VAL LYS SER ARG HIS ILE VAL PHE SER SEQRES 5 D 198 LEU HIS SER PHE ALA ALA SER ARG ARG LEU LEU ASN LEU SEQRES 6 D 198 MET LYS TYR LEU SER LYS PRO VAL SER GLU ILE ILE VAL SEQRES 7 D 198 GLU LYS SER HIS ASN ILE LYS LYS ARG TYR ILE LYS ILE SEQRES 8 D 198 THR ALA GLU TYR SER GLU SER PHE MET VAL ILE GLU PRO SEQRES 9 D 198 PHE PHE ASP VAL ALA LEU PHE VAL SER PHE LEU ARG GLY SEQRES 10 D 198 LEU PHE LEU SER GLY GLY SER MET THR ASN PRO ARG TYR SEQRES 11 D 198 HIS TYR HIS LEU GLU ILE ASN LEU PHE GLU GLU GLU THR SEQRES 12 D 198 LEU ALA LEU THR ARG LYS SER LEU LYS ASP PHE PHE ASN SEQRES 13 D 198 ILE ASN ALA GLY ILE ILE GLU LEU ARG ASN THR ARG LYS SEQRES 14 D 198 LEU TYR ILE LYS SER ILE LYS ASP ILE LEU VAL PHE LEU SEQRES 15 D 198 GLU ALA ILE GLY VAL GLN ARG LYS LEU GLU GLU ILE ASP SEQRES 16 D 198 ARG ILE VAL HET GOL A3731 6 HET NA A 199 1 HET CL D 199 1 HET GOL D3731 6 HET CL D 200 1 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 NA NA 1+ FORMUL 5 CL 2(CL 1-) FORMUL 8 HOH *57(H2 O) HELIX 1 1 THR A 8 ASN A 19 1 12 HELIX 2 2 SER A 24 ARG A 39 1 16 HELIX 3 3 SER A 55 LEU A 69 1 15 HELIX 4 4 SER A 96 ILE A 102 5 7 HELIX 5 5 ASP A 107 GLY A 122 1 16 HELIX 6 6 GLU A 140 ASN A 156 1 17 HELIX 7 7 SER A 174 ILE A 185 1 12 HELIX 8 8 THR D 8 VAL D 18 1 11 HELIX 9 9 SER D 24 ARG D 39 1 16 HELIX 10 10 SER D 55 LEU D 69 1 15 HELIX 11 11 ASP D 107 GLY D 122 1 16 HELIX 12 12 GLU D 140 ASN D 156 1 17 HELIX 13 13 SER D 174 GLY D 186 1 13 HELIX 14 14 GLU D 192 VAL D 198 1 7 SHEET 1 A 5 VAL A 2 SER A 3 0 SHEET 2 A 5 VAL D 73 LYS D 80 -1 O VAL D 78 N VAL A 2 SHEET 3 A 5 LYS D 86 GLU D 94 -1 O LYS D 90 N ILE D 77 SHEET 4 A 5 HIS D 48 LEU D 53 -1 N ILE D 49 O ALA D 93 SHEET 5 A 5 GLY D 40 ASP D 41 -1 N ASP D 41 O VAL D 50 SHEET 1 B 5 GLY A 40 LEU A 42 0 SHEET 2 B 5 ILE A 49 LEU A 53 -1 O VAL A 50 N ASP A 41 SHEET 3 B 5 TYR A 88 ALA A 93 -1 O ILE A 91 N PHE A 51 SHEET 4 B 5 VAL A 73 GLU A 79 -1 N SER A 74 O THR A 92 SHEET 5 B 5 VAL D 2 SER D 3 -1 O VAL D 2 N VAL A 78 SHEET 1 C 4 GLY A 123 MET A 125 0 SHEET 2 C 4 LEU A 134 ASN A 137 -1 O GLU A 135 N SER A 124 SHEET 3 C 4 THR A 167 ILE A 172 -1 O ILE A 172 N LEU A 134 SHEET 4 C 4 GLY A 160 LEU A 164 -1 N GLY A 160 O TYR A 171 SHEET 1 D 4 GLY D 123 MET D 125 0 SHEET 2 D 4 LEU D 134 ASN D 137 -1 O GLU D 135 N SER D 124 SHEET 3 D 4 ARG D 168 ILE D 172 -1 O ILE D 172 N LEU D 134 SHEET 4 D 4 GLY D 160 GLU D 163 -1 N GLY D 160 O TYR D 171 LINK NE2 HIS A 131 NA NA A 199 1555 1555 2.17 LINK ND1 HIS A 133 NA NA A 199 1555 1555 2.18 CISPEP 1 ARG A 47 HIS A 48 0 -0.98 CISPEP 2 SER A 81 HIS A 82 0 -17.84 SITE 1 AC1 3 GLU A 15 LEU D 63 LYS D 67 SITE 1 AC2 2 LYS D 14 GLY D 123 SITE 1 AC3 6 LEU A 164 ARG A 165 ASN D 158 SER D 174 SITE 2 AC3 6 ASP D 177 HOH D 205 SITE 1 AC4 1 ARG D 60 SITE 1 AC5 4 HIS A 131 HIS A 133 HIS D 131 HIS D 133 CRYST1 50.448 79.899 115.426 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019822 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008664 0.00000