HEADER OXIDOREDUCTASE 23-JUN-09 3HZ4 TITLE CRYSTAL STRUCTURE OF THIOREDOXIN FROM METHANOSARCINA MAZEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 2209; SOURCE 4 GENE: MM_2079; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: TOP10 KEYWDS NYSGXRC, PSI-II, REDUCED FORM, THIOREDOXIN, 11215H, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, STRUCTURAL GENOMICS, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.SYED IBRAHIM,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 2 10-FEB-21 3HZ4 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 30-JUN-09 3HZ4 0 JRNL AUTH B.SYED IBRAHIM,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN FROM METHANOSARCINA MAZEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 17112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -1.21000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.592 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2001 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2707 ; 2.086 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 7.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.382 ;24.255 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;21.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.226 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.193 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1550 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 872 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1329 ; 0.325 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.429 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 1.659 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1951 ; 2.215 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 908 ; 3.812 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 756 ; 5.763 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 1 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.38 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA IS HEMIHEDRAL TWINNING WITH REMARK 3 TWINNING OPERATOR (-H, -K, L) AND CORRESPONDING TWINNED FRACTION: REMARK 3 0.38. REMARK 4 REMARK 4 3HZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 21.50 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M BIS TRIS PH 5.5, REMARK 280 0.2M LISO4, 0.1M EDTA, 20% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.58267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.29133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.29133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.58267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 VAL A 122 REMARK 465 GLY A 123 REMARK 465 GLN A 124 REMARK 465 ASP A 125 REMARK 465 ILE A 126 REMARK 465 THR A 127 REMARK 465 GLY A 128 REMARK 465 TYR A 129 REMARK 465 VAL A 130 REMARK 465 GLU A 131 REMARK 465 GLY A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 MSE B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ASP B 125 REMARK 465 ILE B 126 REMARK 465 THR B 127 REMARK 465 GLY B 128 REMARK 465 TYR B 129 REMARK 465 VAL B 130 REMARK 465 GLU B 131 REMARK 465 GLY B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 84 CB CYS A 84 SG -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 86 C - N - CA ANGL. DEV. = -13.8 DEGREES REMARK 500 VAL B 89 CG1 - CB - CG2 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 -13.30 51.03 REMARK 500 VAL A 18 -62.24 -109.76 REMARK 500 HIS A 85 -130.25 41.45 REMARK 500 LYS A 118 46.40 -99.79 REMARK 500 VAL B 18 -61.13 -107.10 REMARK 500 LYS B 118 57.66 -95.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 144 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11215H RELATED DB: TARGETDB DBREF 3HZ4 A 2 130 UNP Q8PV92 Q8PV92_METMA 2 130 DBREF 3HZ4 B 2 130 UNP Q8PV92 Q8PV92_METMA 2 130 SEQADV 3HZ4 MSE A -1 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 SER A 0 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 LEU A 1 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 GLU A 131 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 GLY A 132 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS A 133 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS A 134 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS A 135 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS A 136 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS A 137 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS A 138 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 MSE B -1 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 SER B 0 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 LEU B 1 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 GLU B 131 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 GLY B 132 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS B 133 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS B 134 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS B 135 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS B 136 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS B 137 UNP Q8PV92 EXPRESSION TAG SEQADV 3HZ4 HIS B 138 UNP Q8PV92 EXPRESSION TAG SEQRES 1 A 140 MSE SER LEU ASN GLY SER SER ILE ILE GLU PHE GLU ASP SEQRES 2 A 140 MSE THR TRP SER GLN GLN VAL GLU ASP SER LYS LYS PRO SEQRES 3 A 140 VAL VAL VAL MSE PHE TYR SER PRO ALA CYS PRO TYR CYS SEQRES 4 A 140 LYS ALA MSE GLU PRO TYR PHE GLU GLU TYR ALA LYS GLU SEQRES 5 A 140 TYR GLY SER SER ALA VAL PHE GLY ARG ILE ASN ILE ALA SEQRES 6 A 140 THR ASN PRO TRP THR ALA GLU LYS TYR GLY VAL GLN GLY SEQRES 7 A 140 THR PRO THR PHE LYS PHE PHE CYS HIS GLY ARG PRO VAL SEQRES 8 A 140 TRP GLU GLN VAL GLY GLN ILE TYR PRO SER ILE LEU LYS SEQRES 9 A 140 ASN ALA VAL ARG ASP MSE LEU GLN HIS GLY GLU GLU CYS SEQRES 10 A 140 ILE ARG LYS SER THR PRO VAL GLY GLN ASP ILE THR GLY SEQRES 11 A 140 TYR VAL GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 140 MSE SER LEU ASN GLY SER SER ILE ILE GLU PHE GLU ASP SEQRES 2 B 140 MSE THR TRP SER GLN GLN VAL GLU ASP SER LYS LYS PRO SEQRES 3 B 140 VAL VAL VAL MSE PHE TYR SER PRO ALA CYS PRO TYR CYS SEQRES 4 B 140 LYS ALA MSE GLU PRO TYR PHE GLU GLU TYR ALA LYS GLU SEQRES 5 B 140 TYR GLY SER SER ALA VAL PHE GLY ARG ILE ASN ILE ALA SEQRES 6 B 140 THR ASN PRO TRP THR ALA GLU LYS TYR GLY VAL GLN GLY SEQRES 7 B 140 THR PRO THR PHE LYS PHE PHE CYS HIS GLY ARG PRO VAL SEQRES 8 B 140 TRP GLU GLN VAL GLY GLN ILE TYR PRO SER ILE LEU LYS SEQRES 9 B 140 ASN ALA VAL ARG ASP MSE LEU GLN HIS GLY GLU GLU CYS SEQRES 10 B 140 ILE ARG LYS SER THR PRO VAL GLY GLN ASP ILE THR GLY SEQRES 11 B 140 TYR VAL GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3HZ4 MSE A 12 MET SELENOMETHIONINE MODRES 3HZ4 MSE A 28 MET SELENOMETHIONINE MODRES 3HZ4 MSE A 40 MET SELENOMETHIONINE MODRES 3HZ4 MSE A 108 MET SELENOMETHIONINE MODRES 3HZ4 MSE B 12 MET SELENOMETHIONINE MODRES 3HZ4 MSE B 28 MET SELENOMETHIONINE MODRES 3HZ4 MSE B 40 MET SELENOMETHIONINE MODRES 3HZ4 MSE B 108 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 28 8 HET MSE A 40 8 HET MSE A 108 8 HET MSE B 12 8 HET MSE B 28 8 HET MSE B 40 8 HET MSE B 108 8 HET EDO B 142 4 HET EDO B 143 4 HET EDO B 144 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *99(H2 O) HELIX 1 1 GLU A 10 MSE A 12 5 3 HELIX 2 2 THR A 13 VAL A 18 1 6 HELIX 3 3 CYS A 34 GLY A 52 1 19 HELIX 4 4 ASN A 65 GLY A 73 1 9 HELIX 5 5 TYR A 97 LYS A 118 1 22 HELIX 6 6 THR B 13 VAL B 18 1 6 HELIX 7 7 CYS B 34 GLY B 52 1 19 HELIX 8 8 ASN B 65 TYR B 72 1 8 HELIX 9 9 TYR B 97 LYS B 118 1 22 SHEET 1 A10 ILE A 6 PHE A 9 0 SHEET 2 A10 VAL A 56 ASN A 61 1 O PHE A 57 N ILE A 7 SHEET 3 A10 VAL A 25 TYR A 30 1 N VAL A 26 O VAL A 56 SHEET 4 A10 THR A 79 CYS A 84 -1 O THR A 79 N PHE A 29 SHEET 5 A10 ARG A 87 VAL A 93 -1 O ARG A 87 N CYS A 84 SHEET 6 A10 ARG B 87 VAL B 93 -1 O VAL B 89 N VAL A 93 SHEET 7 A10 THR B 79 CYS B 84 -1 N PHE B 80 O GLN B 92 SHEET 8 A10 VAL B 25 TYR B 30 -1 N PHE B 29 O THR B 79 SHEET 9 A10 VAL B 56 ASN B 61 1 O GLY B 58 N VAL B 26 SHEET 10 A10 ILE B 7 GLU B 8 1 N ILE B 7 O ARG B 59 SHEET 1 B 2 GLY A 76 THR A 77 0 SHEET 2 B 2 THR B 120 PRO B 121 -1 O THR B 120 N THR A 77 LINK C ASP A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N THR A 13 1555 1555 1.33 LINK C VAL A 27 N MSE A 28 1555 1555 1.31 LINK C MSE A 28 N PHE A 29 1555 1555 1.35 LINK C ALA A 39 N MSE A 40 1555 1555 1.32 LINK C MSE A 40 N GLU A 41 1555 1555 1.33 LINK C ASP A 107 N MSE A 108 1555 1555 1.32 LINK C MSE A 108 N LEU A 109 1555 1555 1.33 LINK C ASP B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N THR B 13 1555 1555 1.33 LINK C VAL B 27 N MSE B 28 1555 1555 1.32 LINK C MSE B 28 N PHE B 29 1555 1555 1.35 LINK C ALA B 39 N MSE B 40 1555 1555 1.32 LINK C MSE B 40 N GLU B 41 1555 1555 1.34 LINK C ASP B 107 N MSE B 108 1555 1555 1.32 LINK C MSE B 108 N LEU B 109 1555 1555 1.34 CISPEP 1 GLY A 3 SER A 4 0 3.30 CISPEP 2 THR A 77 PRO A 78 0 0.89 CISPEP 3 THR B 77 PRO B 78 0 -5.69 SITE 1 AC1 3 PRO B 66 TRP B 67 GLU B 70 SITE 1 AC2 11 PRO A 88 HOH A 193 GLY B 73 VAL B 74 SITE 2 AC2 11 GLN B 75 GLY B 76 THR B 79 GLU B 91 SITE 3 AC2 11 VAL B 93 HOH B 184 HOH B 187 SITE 1 AC3 4 TRP A 90 MSE A 108 TRP B 90 GLN B 92 CRYST1 82.068 82.068 93.874 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012185 0.007035 0.000000 0.00000 SCALE2 0.000000 0.014070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010653 0.00000