HEADER TRANSCRIPTION/DNA 23-JUN-09 3HZI TITLE STRUCTURE OF MDT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HIPA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*D COMPND 12 GP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3'; COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: HIPA, B1507, JW1500; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD22; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 83333; SOURCE 13 GENE: HIPB, B1508, JW1501; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES KEYWDS MDT, PERSISTENCE, DNA-BINDING, REPRESSOR, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION REGULATION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 6 30-OCT-24 3HZI 1 REMARK REVDAT 5 22-NOV-23 3HZI 1 REMARK REVDAT 4 06-SEP-23 3HZI 1 REMARK REVDAT 3 13-OCT-21 3HZI 1 REMARK SEQADV REVDAT 2 15-JAN-20 3HZI 1 REMARK LINK REVDAT 1 28-JUL-09 3HZI 0 SPRSDE 28-JUL-09 3HZI 3DNW JRNL AUTH M.A.SCHUMACHER,K.M.PIRO,W.XU,S.HANSEN,K.LEWIS,R.G.BRENNAN JRNL TITL MOLECULAR MECHANISMS OF HIPA-MEDIATED MULTIDRUG TOLERANCE JRNL TITL 2 AND ITS NEUTRALIZATION BY HIPB. JRNL REF SCIENCE V. 323 396 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19150849 JRNL DOI 10.1126/SCIENCE.1163806 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 118.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1980011.140 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 13.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2435 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2632 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 13.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 395 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3911 REMARK 3 NUCLEIC ACID ATOMS : 428 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 156.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.12000 REMARK 3 B22 (A**2) : 19.12000 REMARK 3 B33 (A**2) : -38.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.69 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.77 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 63.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : ATP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : ATP-TOP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 118.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3DNV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TASCIMATE, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 167.25000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 144 REMARK 465 ASN A 145 REMARK 465 GLY A 185 REMARK 465 GLU A 186 REMARK 465 ILE A 187 REMARK 465 ARG A 188 REMARK 465 GLN A 189 REMARK 465 PRO A 190 REMARK 465 ASN A 191 REMARK 465 ALA A 192 REMARK 465 THR A 193 REMARK 465 LEU A 194 REMARK 465 ASP A 195 REMARK 465 GLY A 438 REMARK 465 SER A 439 REMARK 465 LYS A 440 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 ASN B 75 REMARK 465 ALA B 76 REMARK 465 SER B 77 REMARK 465 PRO B 78 REMARK 465 GLU B 79 REMARK 465 SER B 80 REMARK 465 THR B 81 REMARK 465 GLU B 82 REMARK 465 GLN B 83 REMARK 465 GLN B 84 REMARK 465 ASN B 85 REMARK 465 LEU B 86 REMARK 465 GLU B 87 REMARK 465 TRP B 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 436 O3 SO4 A 834 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 416 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 GLU A 416 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 47.90 39.12 REMARK 500 ASN A 10 35.78 70.88 REMARK 500 GLU A 15 128.15 -177.69 REMARK 500 LEU A 19 -178.22 -63.74 REMARK 500 ASN A 21 28.53 -71.72 REMARK 500 LEU A 33 5.20 -68.24 REMARK 500 ALA A 38 130.45 -27.39 REMARK 500 ARG A 39 147.91 -173.01 REMARK 500 ASN A 63 4.71 -68.34 REMARK 500 LYS A 77 -83.84 -67.16 REMARK 500 HIS A 80 77.57 -66.74 REMARK 500 SER A 83 -179.50 173.07 REMARK 500 GLU A 92 -74.36 -83.98 REMARK 500 ASP A 96 69.04 -102.19 REMARK 500 ALA A 100 7.91 -161.45 REMARK 500 GLU A 108 75.83 173.10 REMARK 500 VAL A 110 83.81 27.12 REMARK 500 THR A 111 68.51 -64.92 REMARK 500 HIS A 112 163.56 -45.81 REMARK 500 TRP A 117 128.77 -173.31 REMARK 500 THR A 130 13.49 -146.05 REMARK 500 ALA A 134 -118.80 -94.15 REMARK 500 ASP A 135 50.60 -144.65 REMARK 500 ARG A 142 39.51 -67.36 REMARK 500 THR A 158 131.11 -172.08 REMARK 500 SER A 197 -91.13 -90.28 REMARK 500 GLU A 212 -15.22 -43.14 REMARK 500 ASN A 227 25.85 -69.32 REMARK 500 ARG A 239 129.30 -173.46 REMARK 500 ALA A 242 -70.04 -44.57 REMARK 500 MET A 255 -9.68 -51.49 REMARK 500 SER A 269 42.91 -92.83 REMARK 500 ASP A 270 -39.71 -151.60 REMARK 500 ALA A 276 -79.32 -48.52 REMARK 500 ALA A 288 -70.89 -40.27 REMARK 500 TRP A 303 -70.03 -66.12 REMARK 500 ALA A 312 -56.46 -28.94 REMARK 500 LYS A 313 7.46 -50.79 REMARK 500 TYR A 325 149.23 -177.35 REMARK 500 ASP A 332 85.39 41.90 REMARK 500 PRO A 338 -7.59 -49.26 REMARK 500 THR A 343 -169.12 -117.62 REMARK 500 ILE A 347 -18.44 -34.70 REMARK 500 LYS A 360 3.99 -62.42 REMARK 500 PRO A 384 108.59 -28.07 REMARK 500 THR A 408 17.09 -69.75 REMARK 500 THR A 412 -2.04 -55.47 REMARK 500 LEU A 433 -73.24 -62.43 REMARK 500 ARG A 435 2.04 -61.03 REMARK 500 GLU A 436 -47.00 -140.41 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG T 713 0.08 SIDE CHAIN REMARK 500 DG T 715 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 837 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 838 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 834 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 833 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 835 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 836 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 878 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 640 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DNT RELATED DB: PDB REMARK 900 RELATED ID: 3DNU RELATED DB: PDB REMARK 900 RELATED ID: 3DNV RELATED DB: PDB DBREF 3HZI A 1 440 UNP P23874 HIPA_ECOLI 1 440 DBREF 3HZI B 1 88 UNP P23873 HIPB_ECOLI 1 88 DBREF 3HZI T 699 719 PDB 3HZI 3HZI 699 719 SEQADV 3HZI GLN A 309 UNP P23874 ASP 309 ENGINEERED MUTATION SEQRES 1 A 440 MET PRO LYS LEU VAL THR TRP MET ASN ASN GLN ARG VAL SEQRES 2 A 440 GLY GLU LEU THR LYS LEU ALA ASN GLY ALA HIS THR PHE SEQRES 3 A 440 LYS TYR ALA PRO GLU TRP LEU ALA SER ARG TYR ALA ARG SEQRES 4 A 440 PRO LEU SER LEU SER LEU PRO LEU GLN ARG GLY ASN ILE SEQRES 5 A 440 THR SER ASP ALA VAL PHE ASN PHE PHE ASP ASN LEU LEU SEQRES 6 A 440 PRO ASP SER PRO ILE VAL ARG ASP ARG ILE VAL LYS ARG SEQRES 7 A 440 TYR HIS ALA LYS SER ARG GLN PRO PHE ASP LEU LEU SER SEQRES 8 A 440 GLU ILE GLY ARG ASP SER VAL GLY ALA VAL THR LEU ILE SEQRES 9 A 440 PRO GLU ASP GLU THR VAL THR HIS PRO ILE MET ALA TRP SEQRES 10 A 440 GLU LYS LEU THR GLU ALA ARG LEU GLU GLU VAL LEU THR SEQRES 11 A 440 ALA TYR LYS ALA ASP ILE PRO LEU GLY MSE ILE ARG GLU SEQRES 12 A 440 GLU ASN ASP PHE ARG ILE SER VAL ALA GLY ALA GLN GLU SEQRES 13 A 440 LYS THR ALA LEU LEU ARG ILE GLY ASN ASP TRP CYS ILE SEQRES 14 A 440 PRO LYS GLY ILE THR PRO THR THR HIS ILE ILE LYS LEU SEQRES 15 A 440 PRO ILE GLY GLU ILE ARG GLN PRO ASN ALA THR LEU ASP SEQRES 16 A 440 LEU SER GLN SER VAL ASP ASN GLU TYR TYR CYS LEU LEU SEQRES 17 A 440 LEU ALA LYS GLU LEU GLY LEU ASN VAL PRO ASP ALA GLU SEQRES 18 A 440 ILE ILE LYS ALA GLY ASN VAL ARG ALA LEU ALA VAL GLU SEQRES 19 A 440 ARG PHE ASP ARG ARG TRP ASN ALA ARG ARG THR VAL LEU SEQRES 20 A 440 LEU ARG LEU PRO GLN GLU ASP MET CYS GLN THR PHE GLY SEQRES 21 A 440 LEU PRO SER SER VAL LYS TYR GLU SER ASP GLY GLY PRO SEQRES 22 A 440 GLY ILE ALA ARG ILE MET ALA PHE LEU MSE GLY SER SER SEQRES 23 A 440 GLU ALA LEU LYS ASP ARG TYR ASP PHE MET LYS PHE GLN SEQRES 24 A 440 VAL PHE GLN TRP LEU ILE GLY ALA THR GLN GLY HIS ALA SEQRES 25 A 440 LYS ASN PHE SER VAL PHE ILE GLN ALA GLY GLY SER TYR SEQRES 26 A 440 ARG LEU THR PRO PHE TYR ASP ILE ILE SER ALA PHE PRO SEQRES 27 A 440 VAL LEU GLY GLY THR GLY ILE HIS ILE SER ASP LEU LYS SEQRES 28 A 440 LEU ALA MET GLY LEU ASN ALA SER LYS GLY LYS LYS THR SEQRES 29 A 440 ALA ILE ASP LYS ILE TYR PRO ARG HIS PHE LEU ALA THR SEQRES 30 A 440 ALA LYS VAL LEU ARG PHE PRO GLU VAL GLN MET HIS GLU SEQRES 31 A 440 ILE LEU SER ASP PHE ALA ARG MSE ILE PRO ALA ALA LEU SEQRES 32 A 440 ASP ASN VAL LYS THR SER LEU PRO THR ASP PHE PRO GLU SEQRES 33 A 440 ASN VAL VAL THR ALA VAL GLU SER ASN VAL LEU ARG LEU SEQRES 34 A 440 HIS GLY ARG LEU SER ARG GLU TYR GLY SER LYS SEQRES 1 B 88 MET MET SER PHE GLN LYS ILE TYR SER PRO THR GLN LEU SEQRES 2 B 88 ALA ASN ALA MET LYS LEU VAL ARG GLN GLN ASN GLY TRP SEQRES 3 B 88 THR GLN SER GLU LEU ALA LYS LYS ILE GLY ILE LYS GLN SEQRES 4 B 88 ALA THR ILE SER ASN PHE GLU ASN ASN PRO ASP ASN THR SEQRES 5 B 88 THR LEU THR THR PHE PHE LYS ILE LEU GLN SER LEU GLU SEQRES 6 B 88 LEU SER MET THR LEU CYS ASP ALA LYS ASN ALA SER PRO SEQRES 7 B 88 GLU SER THR GLU GLN GLN ASN LEU GLU TRP SEQRES 1 T 21 DA DC DT DA DT DC DC DC DC DT DT DA DA SEQRES 2 T 21 DG DG DG DG DA DT DA DG MODRES 3HZI MSE A 140 MET SELENOMETHIONINE MODRES 3HZI MSE A 283 MET SELENOMETHIONINE MODRES 3HZI MSE A 398 MET SELENOMETHIONINE HET MSE A 140 8 HET MSE A 283 8 HET MSE A 398 8 HET ATP A 500 31 HET SO4 A 837 5 HET SO4 A 838 5 HET SO4 A 834 5 HET SO4 A 833 5 HET SO4 A 835 5 HET SO4 A 836 5 HET SO4 A 878 5 HET SO4 A 879 5 HET SO4 B 640 5 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 HOH *5(H2 O) HELIX 1 1 GLU A 31 SER A 35 5 5 HELIX 2 2 SER A 54 ASN A 63 1 10 HELIX 3 3 SER A 68 VAL A 76 1 9 HELIX 4 4 GLN A 85 ILE A 93 1 9 HELIX 5 5 THR A 121 LEU A 129 1 9 HELIX 6 6 ILE A 136 MSE A 140 5 5 HELIX 7 7 GLN A 198 LEU A 213 1 16 HELIX 8 8 MET A 255 PHE A 259 1 5 HELIX 9 9 PRO A 262 LYS A 266 5 5 HELIX 10 10 GLY A 274 MSE A 283 1 10 HELIX 11 11 GLU A 287 ILE A 305 1 19 HELIX 12 12 HIS A 311 ASN A 314 5 4 HELIX 13 13 ALA A 321 GLY A 323 5 3 HELIX 14 14 TYR A 370 LEU A 381 1 12 HELIX 15 15 PRO A 384 ARG A 397 1 14 HELIX 16 16 MSE A 398 THR A 408 1 11 HELIX 17 17 PRO A 415 ARG A 435 1 21 HELIX 18 18 SER B 9 ASN B 24 1 16 HELIX 19 19 THR B 27 ILE B 35 1 9 HELIX 20 20 LYS B 38 GLU B 46 1 9 HELIX 21 21 THR B 53 LEU B 64 1 12 SHEET 1 A 5 ASN A 51 ILE A 52 0 SHEET 2 A 5 HIS A 24 TYR A 28 -1 N PHE A 26 O ILE A 52 SHEET 3 A 5 GLN A 11 LYS A 18 -1 N THR A 17 O THR A 25 SHEET 4 A 5 LEU A 4 MET A 8 -1 N THR A 6 O VAL A 13 SHEET 5 A 5 VAL A 101 PRO A 105 -1 O ILE A 104 N VAL A 5 SHEET 1 B 2 ALA A 116 LYS A 119 0 SHEET 2 B 2 CYS A 168 LYS A 171 -1 O LYS A 171 N ALA A 116 SHEET 1 C 4 LYS A 157 LEU A 160 0 SHEET 2 C 4 HIS A 178 LYS A 181 -1 O HIS A 178 N LEU A 160 SHEET 3 C 4 VAL A 228 GLU A 234 -1 O LEU A 231 N LYS A 181 SHEET 4 C 4 ALA A 220 ALA A 225 -1 N GLU A 221 O ALA A 232 SHEET 1 D 2 ARG A 238 TRP A 240 0 SHEET 2 D 2 LEU A 247 ARG A 249 -1 O LEU A 248 N ARG A 239 SHEET 1 E 3 GLN A 252 ASP A 254 0 SHEET 2 E 3 SER A 316 ILE A 319 -1 O VAL A 317 N GLU A 253 SHEET 3 E 3 TYR A 325 LEU A 327 -1 O ARG A 326 N PHE A 318 LINK C GLY A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N ILE A 141 1555 1555 1.33 LINK C LEU A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N GLY A 284 1555 1555 1.33 LINK C ARG A 397 N MSE A 398 1555 1555 1.33 LINK C MSE A 398 N ILE A 399 1555 1555 1.33 SITE 1 AC1 20 VAL A 98 ALA A 152 GLY A 153 ALA A 154 SITE 2 AC1 20 GLN A 155 LYS A 157 ILE A 179 LYS A 181 SITE 3 AC1 20 GLU A 234 ARG A 235 PHE A 236 ASP A 237 SITE 4 AC1 20 GLN A 252 ASP A 254 HIS A 311 LYS A 313 SITE 5 AC1 20 ASN A 314 SER A 316 TYR A 331 ASP A 332 SITE 1 AC2 2 ARG A 239 SO4 A 838 SITE 1 AC3 4 ASN A 9 TYR A 37 ARG A 39 SO4 A 837 SITE 1 AC4 3 TYR A 370 ARG A 372 GLU A 436 SITE 1 AC5 4 LYS A 360 LYS A 363 ARG A 372 HIS A 373 SITE 1 AC6 1 ARG A 277 SITE 1 AC7 3 ASN A 216 ARG A 326 PRO A 329 SITE 1 AC8 3 LYS A 27 PRO A 30 ARG A 49 SITE 1 AC9 4 LYS B 38 GLN B 39 ALA B 40 DA T 716 CRYST1 167.250 167.250 62.370 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016033 0.00000