HEADER IMMUNE SYSTEM 24-JUN-09 3HZV TITLE CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.8) TITLE 2 KDO(2.4)KDO COMPND MOL_ID: 1; COMPND 2 MOLECULE: S73-2 FAB (IGG1K) LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S73-2 FAB (IGG1K) HEAVY CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: ASCITES; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: ASCITES KEYWDS ANTIBODY, FAB, IGG, CARBOHYDRATE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA,T.HIRAMA, AUTHOR 2 C.R.MACKENZIE,H.BRADE,S.V.EVANS REVDAT 5 06-SEP-23 3HZV 1 HETSYN REVDAT 4 29-JUL-20 3HZV 1 COMPND REMARK DBREF HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 16-MAR-11 3HZV 1 HET HETATM FORMUL LINK REVDAT 3 2 1 SITE REMARK REVDAT 2 02-FEB-10 3HZV 1 JRNL REVDAT 1 12-JAN-10 3HZV 0 JRNL AUTH C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA, JRNL AUTH 2 T.HIRAMA,C.R.MACKENZIE,H.BRADE,S.V.EVANS JRNL TITL ANTIBODIES RAISED AGAINST CHLAMYDIAL LIPOPOLYSACCHARIDE JRNL TITL 2 ANTIGENS REVEAL CONVERGENCE IN GERMLINE GENE USAGE AND JRNL TITL 3 DIFFERENTIAL EPITOPE RECOGNITION JRNL REF BIOCHEMISTRY V. 49 570 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20000757 JRNL DOI 10.1021/BI9011308 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 38597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9890 - 4.5620 0.92 2615 151 0.1900 0.1970 REMARK 3 2 4.5620 - 3.6280 0.95 2594 136 0.1840 0.2170 REMARK 3 3 3.6280 - 3.1720 0.96 2609 144 0.2050 0.2200 REMARK 3 4 3.1720 - 2.8830 0.97 2608 145 0.2290 0.2860 REMARK 3 5 2.8830 - 2.6770 0.98 2641 123 0.2250 0.3010 REMARK 3 6 2.6770 - 2.5190 0.98 2598 148 0.2260 0.2730 REMARK 3 7 2.5190 - 2.3930 0.99 2638 133 0.2130 0.2580 REMARK 3 8 2.3930 - 2.2890 0.99 2648 112 0.2040 0.2600 REMARK 3 9 2.2890 - 2.2010 0.99 2632 150 0.1950 0.2380 REMARK 3 10 2.2010 - 2.1250 0.99 2601 124 0.1990 0.2420 REMARK 3 11 2.1250 - 2.0590 0.99 2620 150 0.2140 0.2640 REMARK 3 12 2.0590 - 2.0000 0.99 2636 131 0.2240 0.2980 REMARK 3 13 2.0000 - 1.9470 0.99 2602 137 0.2450 0.2940 REMARK 3 14 1.9470 - 1.9000 0.99 2629 142 0.2600 0.3000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 49.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05800 REMARK 3 B22 (A**2) : 0.09900 REMARK 3 B33 (A**2) : -0.15700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3507 REMARK 3 ANGLE : 0.942 4770 REMARK 3 CHIRALITY : 0.060 541 REMARK 3 PLANARITY : 0.003 598 REMARK 3 DIHEDRAL : 16.270 1255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.1SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38610 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.680 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.37 REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1Q9R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, ETHYLENE GLYCOL, ZNCL2, REMARK 280 MGCL2, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 213 REMARK 465 SER B 127A REMARK 465 ALA B 127B REMARK 465 ALA B 127C REMARK 465 GLN B 127D REMARK 465 THR B 127E REMARK 465 ASN B 127F REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -33.83 70.11 REMARK 500 SER A 77 73.72 43.00 REMARK 500 ALA A 84 172.14 177.29 REMARK 500 LEU A 94 -138.14 52.46 REMARK 500 LYS A 168 -63.24 -91.00 REMARK 500 ALA B 88 167.27 178.68 REMARK 500 ASP B 95 -150.09 -100.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HZK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) REMARK 900 KDO REMARK 900 RELATED ID: 3HZM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO REMARK 900 RELATED ID: 3HZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) REMARK 900 KDO(2.4)KDO REMARK 900 RELATED ID: 3I02 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HOMOLOGOUS S54-10 ANTIBODY IN COMPLEX WITH REMARK 900 ANTIGEN KDO(2.4)KDO(2.4)KDO DBREF 3HZV A 1 213 PDB 3HZV 3HZV 1 213 DBREF 3HZV B 1 212 PDB 3HZV 3HZV 1 212 SEQRES 1 A 219 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS SER ILE ALA VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP LYS LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 226 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 226 SER GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 226 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 226 PRO PRO GLY LYS ALA LEU GLU TRP LEU ALA PHE ILE ARG SEQRES 5 B 226 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER SER SER SEQRES 6 B 226 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 226 SER PHE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 226 ASP SER ALA THR TYR TYR CYS ALA ARG ASP ILE ASN PRO SEQRES 9 B 226 GLY SER ASP GLY TYR TYR ASP ALA LEU ASP TYR TRP GLY SEQRES 10 B 226 GLN GLY THR SER VAL THR VAL SER ARG ALA LYS THR THR SEQRES 11 B 226 PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA SEQRES 12 B 226 GLN THR ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS SEQRES 13 B 226 GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER SEQRES 14 B 226 GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 B 226 LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR SEQRES 16 B 226 VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR CYS SEQRES 17 B 226 ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS SEQRES 18 B 226 LYS ILE VAL PRO ARG HET KDA C 1 19 HET KDO C 2 15 HET KDO C 3 15 HET MG A 214 1 HET MG A 215 1 HET ZN B 213 1 HETNAM KDA PROP-2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2- HETNAM 2 KDA ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETSYN KDA (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL; PROP- HETSYN 2 KDA 2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 3 KDA PROP-2-EN-1-YL 3-DEOXY-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 4 KDA PROP-2-EN-1-YL 3-DEOXY-MANNO-OCT-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 3 KDA C11 H18 O8 FORMUL 3 KDO 2(C8 H14 O8) FORMUL 4 MG 2(MG 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *348(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 THR A 125 1 6 HELIX 3 3 LYS A 182 GLU A 186 1 5 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 ASN B 52A GLY B 54 5 5 HELIX 6 6 ARG B 83 SER B 87 5 5 HELIX 7 7 SER B 155 SER B 157 5 3 HELIX 8 8 SER B 185 TRP B 187 5 3 HELIX 9 9 PRO B 199 SER B 202 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LYS A 45 N GLN A 37 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 LEU A 27C ASN A 27D 0 SHEET 2 D 2 LYS A 30 ASN A 31 -1 O LYS A 30 N ASN A 27D SHEET 1 E 4 THR A 113 PHE A 117 0 SHEET 2 E 4 GLY A 128 PHE A 138 -1 O ASN A 136 N THR A 113 SHEET 3 E 4 TYR A 172 THR A 181 -1 O MET A 174 N LEU A 135 SHEET 4 E 4 VAL A 158 TRP A 162 -1 N SER A 161 O SER A 175 SHEET 1 F 4 SER A 152 ARG A 154 0 SHEET 2 F 4 ALA A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 F 4 SER A 190 THR A 196 -1 O GLU A 194 N LYS A 146 SHEET 4 F 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SHEET 1 G 4 LYS B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 G 4 PHE B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 G 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 H 6 GLY B 10 VAL B 12 0 SHEET 2 H 6 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 H 6 THR B 57 TYR B 59 -1 O GLU B 58 N PHE B 50 SHEET 1 I 4 GLY B 10 VAL B 12 0 SHEET 2 I 4 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 I 4 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 I 4 TYR B 102 TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 MET B 134 TYR B 144 -1 O LEU B 140 N TYR B 122 SHEET 3 J 4 LEU B 173 PRO B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 J 4 VAL B 162 THR B 164 -1 N HIS B 163 O SER B 179 SHEET 1 K 4 SER B 120 LEU B 124 0 SHEET 2 K 4 MET B 134 TYR B 144 -1 O LEU B 140 N TYR B 122 SHEET 3 K 4 LEU B 173 PRO B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 K 4 VAL B 168 GLN B 170 -1 N GLN B 170 O LEU B 173 SHEET 1 L 3 THR B 150 TRP B 153 0 SHEET 2 L 3 THR B 193 HIS B 198 -1 O ASN B 195 N THR B 152 SHEET 3 L 3 THR B 203 LYS B 208 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 4 CYS B 139 CYS B 194 1555 1555 2.03 LINK O4 KDA C 1 C2 KDO C 2 1555 1555 1.45 LINK O8 KDO C 2 C2 KDO C 3 1555 1555 1.44 LINK OE2 GLU B 58 ZN ZN B 213 1555 1555 2.08 CISPEP 1 SER A 7 PRO A 8 0 -2.08 CISPEP 2 TYR A 139 PRO A 140 0 3.51 CISPEP 3 PHE B 145 PRO B 146 0 -1.94 CISPEP 4 GLU B 147 PRO B 148 0 -1.82 CISPEP 5 TRP B 187 PRO B 188 0 9.90 CRYST1 47.050 80.800 128.750 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007767 0.00000