HEADER IMMUNE SYSTEM 24-JUN-09 3HZY TITLE CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) TITLE 2 KDO(2.4)KDO COMPND MOL_ID: 1; COMPND 2 MOLECULE: S73-2 FAB (IGG1K) LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S73-2 FAB (IGG1K) HEAVY CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: ASCITES; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: ASCITES KEYWDS ANTIBODY, FAB, IGG, CARBOHYDRATE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA,T.HIRAMA, AUTHOR 2 C.R.MACKENZIE,H.BRADE,S.V.EVANS REVDAT 5 06-SEP-23 3HZY 1 HETSYN REVDAT 4 29-JUL-20 3HZY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-APR-20 3HZY 1 REMARK DBREF LINK SITE REVDAT 3 2 1 ATOM REVDAT 2 02-FEB-10 3HZY 1 JRNL REVDAT 1 12-JAN-10 3HZY 0 JRNL AUTH C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA, JRNL AUTH 2 T.HIRAMA,C.R.MACKENZIE,H.BRADE,S.V.EVANS JRNL TITL ANTIBODIES RAISED AGAINST CHLAMYDIAL LIPOPOLYSACCHARIDE JRNL TITL 2 ANTIGENS REVEAL CONVERGENCE IN GERMLINE GENE USAGE AND JRNL TITL 3 DIFFERENTIAL EPITOPE RECOGNITION JRNL REF BIOCHEMISTRY V. 49 570 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20000757 JRNL DOI 10.1021/BI9011308 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 27900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8000 - 5.0350 0.89 1858 143 0.2040 0.2530 REMARK 3 2 5.0350 - 4.0080 0.93 1833 141 0.1760 0.1920 REMARK 3 3 4.0080 - 3.5040 0.95 1836 141 0.1990 0.2170 REMARK 3 4 3.5040 - 3.1850 0.96 1874 143 0.2140 0.2390 REMARK 3 5 3.1850 - 2.9580 0.96 1839 142 0.2270 0.3080 REMARK 3 6 2.9580 - 2.7840 0.96 1849 138 0.2280 0.2830 REMARK 3 7 2.7840 - 2.6450 0.97 1864 143 0.2280 0.3020 REMARK 3 8 2.6450 - 2.5300 0.97 1846 142 0.2310 0.3140 REMARK 3 9 2.5300 - 2.4330 0.97 1840 140 0.2210 0.2850 REMARK 3 10 2.4330 - 2.3490 0.98 1864 145 0.2270 0.2790 REMARK 3 11 2.3490 - 2.2760 0.98 1861 143 0.2200 0.2530 REMARK 3 12 2.2760 - 2.2110 0.98 1856 143 0.2170 0.2870 REMARK 3 13 2.2110 - 2.1520 0.98 1857 145 0.2140 0.2650 REMARK 3 14 2.1520 - 2.1000 0.98 1834 140 0.2160 0.2870 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 41.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.670 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.07300 REMARK 3 B22 (A**2) : -4.81800 REMARK 3 B33 (A**2) : -0.25500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3476 REMARK 3 ANGLE : 0.944 4729 REMARK 3 CHIRALITY : 0.065 538 REMARK 3 PLANARITY : 0.004 592 REMARK 3 DIHEDRAL : 16.866 1241 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.4SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.31 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Q9R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, ETHYLENE GLYCOL, ZNCL2, REMARK 280 MGCL2, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.97250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.12100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.98300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.12100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.97250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.98300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 155 REMARK 465 ASN A 211 REMARK 465 GLU A 212 REMARK 465 CYS A 213 REMARK 465 GLY B 126A REMARK 465 SER B 126B REMARK 465 ALA B 126C REMARK 465 ALA B 126D REMARK 465 GLN B 126E REMARK 465 THR B 126F REMARK 465 ASN B 126G REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ZN ZN A 215 ZN ZN B 215 2454 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -34.25 70.53 REMARK 500 LEU A 94 -142.55 51.74 REMARK 500 PRO A 140 -169.28 -78.53 REMARK 500 ALA B 88 165.96 177.29 REMARK 500 ASP B 95 -158.35 -99.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 231 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 244 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B 278 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 214 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 55 OE2 REMARK 620 2 HOH A 223 O 85.6 REMARK 620 3 TYR B 100D OH 92.5 125.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 220 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 55 OE1 REMARK 620 2 HOH A 289 O 66.7 REMARK 620 3 TYR B 100D OH 108.4 95.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 150 OD2 REMARK 620 2 HIS A 188 ND1 101.8 REMARK 620 3 HOH A 287 O 128.1 102.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 215 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE1 REMARK 620 2 GLU A 184 OE2 63.3 REMARK 620 3 HIS A 188 NE2 143.4 91.9 REMARK 620 4 GLU B 58 OE2 45.6 30.8 120.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 215 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 HOH A 281 O 133.4 REMARK 620 3 GLU B 58 OE2 108.6 52.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HZK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) REMARK 900 KDO REMARK 900 RELATED ID: 3HZM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO REMARK 900 RELATED ID: 3HZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.8) REMARK 900 KDO(2.4)KDO REMARK 900 RELATED ID: 3I02 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HOMOLOGOUS S54-10 ANTIBODY IN COMPLEX WITH REMARK 900 ANTIGEN KDO(2.4)KDO(2.4)KDO DBREF 3HZY A 1 213 PDB 3HZY 3HZY 1 213 DBREF 3HZY B 1 219 PDB 3HZY 3HZY 1 219 SEQRES 1 A 219 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ALA VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 226 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 226 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 226 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 226 PRO PRO GLY LYS ALA LEU LYS TRP LEU ALA PHE ILE ARG SEQRES 5 B 226 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 B 226 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 226 SER PHE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 226 ASP SER ALA THR TYR TYR CYS ALA ARG ASP ILE ASN PRO SEQRES 9 B 226 GLY SER ASP GLY TYR TYR ASP ALA LEU ASP TYR TRP GLY SEQRES 10 B 226 GLN GLY THR SER VAL THR VAL SER ARG ALA LYS THR THR SEQRES 11 B 226 PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA SEQRES 12 B 226 GLN THR ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS SEQRES 13 B 226 GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER SEQRES 14 B 226 GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 B 226 LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR SEQRES 16 B 226 VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR CYS SEQRES 17 B 226 ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS SEQRES 18 B 226 LYS ILE VAL PRO ARG HET KDA C 1 19 HET KDO C 2 15 HET KDO C 3 15 HET MG A 216 1 HET ZN A 218 1 HET ZN A 214 1 HET ZN A 215 1 HET ZN B 215 1 HET MG B 220 1 HETNAM KDA PROP-2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2- HETNAM 2 KDA ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETSYN KDA (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL; PROP- HETSYN 2 KDA 2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 3 KDA PROP-2-EN-1-YL 3-DEOXY-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 4 KDA PROP-2-EN-1-YL 3-DEOXY-MANNO-OCT-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 3 KDA C11 H18 O8 FORMUL 3 KDO 2(C8 H14 O8) FORMUL 4 MG 2(MG 2+) FORMUL 5 ZN 4(ZN 2+) FORMUL 10 HOH *330(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 SER A 126 1 7 HELIX 3 3 LYS A 182 ARG A 187 1 6 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 ARG B 83 SER B 87 5 5 HELIX 6 6 SER B 155 SER B 157 5 3 HELIX 7 7 SER B 185 TRP B 187 5 3 HELIX 8 8 PRO B 199 SER B 202 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LYS A 45 N GLN A 37 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 LEU A 27C ASN A 27D 0 SHEET 2 D 2 LYS A 30 ASN A 31 -1 O LYS A 30 N ASN A 27D SHEET 1 E 4 THR A 113 PHE A 117 0 SHEET 2 E 4 GLY A 128 PHE A 138 -1 O VAL A 132 N PHE A 117 SHEET 3 E 4 TYR A 172 THR A 181 -1 O SER A 176 N CYS A 133 SHEET 4 E 4 VAL A 158 TRP A 162 -1 N SER A 161 O SER A 175 SHEET 1 F 4 SER A 152 ARG A 154 0 SHEET 2 F 4 ALA A 144 ILE A 149 -1 N TRP A 147 O ARG A 154 SHEET 3 F 4 SER A 190 THR A 196 -1 O GLU A 194 N LYS A 146 SHEET 4 F 4 ILE A 204 ASN A 209 -1 O LYS A 206 N CYS A 193 SHEET 1 G 4 LYS B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 G 4 PHE B 77 MET B 82 -1 O LEU B 80 N LEU B 20 SHEET 4 G 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 H 6 LEU B 11 VAL B 12 0 SHEET 2 H 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 LYS B 46 ILE B 51 -1 O LYS B 46 N ARG B 38 SHEET 6 H 6 THR B 57 TYR B 59 -1 O GLU B 58 N PHE B 50 SHEET 1 I 4 LEU B 11 VAL B 12 0 SHEET 2 I 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 I 4 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 I 4 TYR B 102 TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 MET B 134 TYR B 144 -1 O LEU B 140 N TYR B 122 SHEET 3 J 4 LEU B 173 PRO B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 J 4 VAL B 162 THR B 164 -1 N HIS B 163 O SER B 179 SHEET 1 K 4 SER B 120 LEU B 124 0 SHEET 2 K 4 MET B 134 TYR B 144 -1 O LEU B 140 N TYR B 122 SHEET 3 K 4 LEU B 173 PRO B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 K 4 VAL B 168 GLN B 170 -1 N VAL B 168 O THR B 175 SHEET 1 L 3 THR B 150 TRP B 153 0 SHEET 2 L 3 THR B 193 HIS B 198 -1 O ASN B 195 N THR B 152 SHEET 3 L 3 THR B 203 LYS B 208 -1 O LYS B 207 N CYS B 194 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.04 SSBOND 4 CYS B 139 CYS B 194 1555 1555 2.03 LINK O4 KDA C 1 C2 KDO C 2 1555 1555 1.46 LINK O4 KDO C 2 C2 KDO C 3 1555 1555 1.45 LINK OE2 GLU A 55 ZN ZN A 214 1555 1555 2.38 LINK OE1 GLU A 55 MG MG B 220 1555 1555 2.42 LINK OD1 ASN A 137 MG MG A 216 1555 1555 2.23 LINK OD2 ASP A 150 ZN ZN A 218 1555 1555 2.02 LINK OE1 GLU A 184 ZN ZN B 215 1555 2454 2.05 LINK OE2 GLU A 184 ZN ZN B 215 1555 2454 2.13 LINK NE2 HIS A 188 ZN ZN A 215 1555 1555 1.99 LINK ND1 HIS A 188 ZN ZN A 218 1555 1555 2.11 LINK NE2 HIS A 188 ZN ZN B 215 1555 2454 2.35 LINK ZN ZN A 214 O HOH A 223 1555 1555 2.65 LINK ZN ZN A 214 OH TYR B 100D 1555 1555 2.33 LINK ZN ZN A 215 O HOH A 281 1555 1555 2.35 LINK ZN ZN A 215 OE2 GLU B 58 2455 1555 2.18 LINK ZN ZN A 218 O HOH A 287 1555 1555 2.51 LINK O HOH A 289 MG MG B 220 1555 1555 2.90 LINK OE2 GLU B 58 ZN ZN B 215 1555 1555 2.25 LINK OH TYR B 100D MG MG B 220 1555 1555 2.18 CISPEP 1 SER A 7 PRO A 8 0 -5.00 CISPEP 2 TYR A 139 PRO A 140 0 5.29 CISPEP 3 PHE B 145 PRO B 146 0 -3.35 CISPEP 4 GLU B 147 PRO B 148 0 -0.15 CISPEP 5 TRP B 187 PRO B 188 0 5.65 CRYST1 45.945 81.966 128.242 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007798 0.00000