HEADER IMMUNE SYSTEM 24-JUN-09 3I02 TITLE CRYSTAL STRUCTURE OF S54-10 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) TITLE 2 KDO(2.4)KDO COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 OTHER_DETAILS: S54-10 FAB LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IMMUNOGLOBULIN HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 OTHER_DETAILS: S54-10 FAB HEAVY CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: ASCITES; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: ASCITES KEYWDS ANTIBODY, FAB, IGG, CARBOHYDRATE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA,T.HIRAMA, AUTHOR 2 C.R.MACKENZIE,H.BRADE,S.V.EVANS REVDAT 4 06-SEP-23 3I02 1 HETSYN REVDAT 3 29-JUL-20 3I02 1 COMPND REMARK DBREF HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 02-FEB-10 3I02 1 JRNL REVDAT 1 12-JAN-10 3I02 0 JRNL AUTH C.L.BROOKS,S.MULLER-LOENNIES,S.N.BORISOVA,L.BRADE,P.KOSMA, JRNL AUTH 2 T.HIRAMA,C.R.MACKENZIE,H.BRADE,S.V.EVANS JRNL TITL ANTIBODIES RAISED AGAINST CHLAMYDIAL LIPOPOLYSACCHARIDE JRNL TITL 2 ANTIGENS REVEAL CONVERGENCE IN GERMLINE GENE USAGE AND JRNL TITL 3 DIFFERENTIAL EPITOPE RECOGNITION JRNL REF BIOCHEMISTRY V. 49 570 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20000757 JRNL DOI 10.1021/BI9011308 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 28866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9902 - 5.5649 0.98 2872 160 0.2153 0.2425 REMARK 3 2 5.5649 - 4.4329 0.99 2796 152 0.1659 0.2120 REMARK 3 3 4.4329 - 3.8772 0.99 2823 153 0.1742 0.2138 REMARK 3 4 3.8772 - 3.5248 0.99 2790 135 0.1881 0.2433 REMARK 3 5 3.5248 - 3.2733 0.97 2711 163 0.2124 0.2830 REMARK 3 6 3.2733 - 3.0811 0.96 2703 144 0.2357 0.3492 REMARK 3 7 3.0811 - 2.9273 0.96 2679 140 0.2540 0.3343 REMARK 3 8 2.9273 - 2.8002 0.96 2662 130 0.2441 0.2946 REMARK 3 9 2.8002 - 2.6926 0.96 2699 147 0.2488 0.3700 REMARK 3 10 2.6926 - 2.6000 0.96 2670 137 0.2543 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 42.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.960 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.15100 REMARK 3 B22 (A**2) : -3.54200 REMARK 3 B33 (A**2) : -2.60900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.29500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6764 REMARK 3 ANGLE : 1.026 9196 REMARK 3 CHIRALITY : 0.060 1055 REMARK 3 PLANARITY : 0.004 1154 REMARK 3 DIHEDRAL : 17.542 2428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.4SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.690 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.81 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.2 REMARK 200 STARTING MODEL: PDB ENTRY 1Q9T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.68000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 128 REMARK 465 ALA B 129 REMARK 465 ALA B 130 REMARK 465 GLN B 131 REMARK 465 ASN C 144 REMARK 465 VAL C 145 REMARK 465 LYS C 146 REMARK 465 TRP C 147 REMARK 465 LYS C 148 REMARK 465 ILE C 149 REMARK 465 ASP C 150 REMARK 465 GLY C 151 REMARK 465 SER C 152 REMARK 465 GLU C 153 REMARK 465 ARG C 154 REMARK 465 GLN C 155 REMARK 465 ASN C 156 REMARK 465 TYR C 185 REMARK 465 GLU C 186 REMARK 465 SER C 190 REMARK 465 TYR C 191 REMARK 465 PHE C 208 REMARK 465 ASN C 209 REMARK 465 ARG C 210 REMARK 465 ASN C 211 REMARK 465 GLU C 212 REMARK 465 CYS C 213 REMARK 465 SER D 128 REMARK 465 ALA D 129 REMARK 465 ALA D 130 REMARK 465 GLN D 131 REMARK 465 THR D 132 REMARK 465 ASN D 133 REMARK 465 SER D 134 REMARK 465 MET D 135 REMARK 465 SER D 203 REMARK 465 THR D 204 REMARK 465 LYS D 205 REMARK 465 ARG D 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL D 211 CG1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -43.88 72.86 REMARK 500 SER A 77 91.27 42.08 REMARK 500 ALA A 84 172.49 179.79 REMARK 500 LEU A 94 -143.55 53.60 REMARK 500 ARG A 154 -80.05 -114.49 REMARK 500 ASP A 164 171.69 -58.49 REMARK 500 LYS A 198 1.43 -67.89 REMARK 500 ASP B 95 -143.22 -97.87 REMARK 500 ARG B 97 -60.35 -107.76 REMARK 500 ASP B 100C -38.60 144.32 REMARK 500 ASN B 133 69.97 -159.65 REMARK 500 SER B 134 1.87 56.90 REMARK 500 MET B 135 111.61 -163.10 REMARK 500 TYR B 145 113.18 87.59 REMARK 500 GLN B 171 85.45 -150.07 REMARK 500 PRO B 212 -176.10 -60.31 REMARK 500 ALA C 51 -41.85 77.97 REMARK 500 SER C 67 141.71 -174.55 REMARK 500 SER C 77 82.16 44.21 REMARK 500 ALA C 84 171.61 178.04 REMARK 500 LEU C 94 -146.51 53.85 REMARK 500 ALA C 129 95.63 -173.55 REMARK 500 SER C 202 -165.72 56.08 REMARK 500 LEU D 18 144.16 -170.76 REMARK 500 SER D 76 62.16 63.67 REMARK 500 ASP D 95 -148.64 -95.24 REMARK 500 ARG D 97 -63.78 -106.79 REMARK 500 ASP D 100C -51.30 143.96 REMARK 500 PRO D 126 -169.90 -60.00 REMARK 500 TYR D 145 120.53 86.82 REMARK 500 SER D 186 -100.70 -73.38 REMARK 500 THR D 187 -55.59 18.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HZK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) REMARK 900 KDO REMARK 900 RELATED ID: 3HZM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO REMARK 900 RELATED ID: 3HZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.8) REMARK 900 KDO(2.4)KDO REMARK 900 RELATED ID: 3HZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S73-2 ANTIBODY IN COMPLEX WITH ANTIGEN KDO(2.4) REMARK 900 KDO(2.4)KDO DBREF 3I02 A 1 213 PDB 3I02 3I02 1 213 DBREF 3I02 B 1 213 PDB 3I02 3I02 1 213 DBREF 3I02 C 1 213 PDB 3I02 3I02 1 213 DBREF 3I02 D 1 213 PDB 3I02 3I02 1 213 SEQRES 1 A 219 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE PHE TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 ARG GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 224 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 224 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 224 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 224 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 224 ASN LYS VAL LYS GLY TYR THR ILE ASP TYR SER ALA SER SEQRES 6 B 224 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 224 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 224 ASP SER ALA THR TYR TYR CYS ALA ARG ASP MET ARG ARG SEQRES 9 B 224 PHE ASP ASP GLY ASP ALA MET ASP TYR TRP GLY GLN GLY SEQRES 10 B 224 THR LEU VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SEQRES 11 B 224 SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR SEQRES 12 B 224 ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR SEQRES 13 B 224 PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER SEQRES 14 B 224 LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 B 224 SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SEQRES 16 B 224 SER SER THR TRP PRO SER GLU THR VAL THR CYS ASN VAL SEQRES 17 B 224 ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE SEQRES 18 B 224 VAL PRO ARG SEQRES 1 C 219 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 C 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 C 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 C 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 C 219 LEU ILE PHE TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 C 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 C 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 C 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 C 219 ARG GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 C 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 C 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 C 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 C 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 C 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 C 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 C 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 C 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 D 224 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 224 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 D 224 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 D 224 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 D 224 ASN LYS VAL LYS GLY TYR THR ILE ASP TYR SER ALA SER SEQRES 6 D 224 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 D 224 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 D 224 ASP SER ALA THR TYR TYR CYS ALA ARG ASP MET ARG ARG SEQRES 9 D 224 PHE ASP ASP GLY ASP ALA MET ASP TYR TRP GLY GLN GLY SEQRES 10 D 224 THR LEU VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SEQRES 11 D 224 SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR SEQRES 12 D 224 ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR SEQRES 13 D 224 PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER SEQRES 14 D 224 LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 D 224 SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SEQRES 16 D 224 SER SER THR TRP PRO SER GLU THR VAL THR CYS ASN VAL SEQRES 17 D 224 ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE SEQRES 18 D 224 VAL PRO ARG HET KDA E 1 19 HET KDO E 2 15 HET KDO E 3 15 HET KDA F 1 19 HET KDO F 2 15 HET KDO F 3 15 HETNAM KDA PROP-2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2- HETNAM 2 KDA ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETSYN KDA (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL; PROP- HETSYN 2 KDA 2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 3 KDA PROP-2-EN-1-YL 3-DEOXY-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 4 KDA PROP-2-EN-1-YL 3-DEOXY-MANNO-OCT-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 5 KDA 2(C11 H18 O8) FORMUL 5 KDO 4(C8 H14 O8) FORMUL 7 HOH *257(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 THR A 125 1 6 HELIX 3 3 LYS A 182 HIS A 188 1 7 HELIX 4 4 ASN A 211 CYS A 213 5 3 HELIX 5 5 THR B 28 TYR B 32 5 5 HELIX 6 6 ASN B 52A GLY B 54 5 5 HELIX 7 7 ARG B 83 SER B 87 5 5 HELIX 8 8 ARG B 98 GLY B 100B 5 5 HELIX 9 9 SER B 156 SER B 158 5 3 HELIX 10 10 PRO B 200 SER B 203 5 4 HELIX 11 11 GLN C 79 LEU C 83 5 5 HELIX 12 12 SER C 120 GLY C 127 1 8 HELIX 13 13 THR D 28 TYR D 32 5 5 HELIX 14 14 ARG D 83 SER D 87 5 5 HELIX 15 15 SER D 156 SER D 158 5 3 HELIX 16 16 SER D 186 GLU D 191 1 6 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B12 THR A 53 ARG A 54 0 SHEET 2 B12 LYS A 45 PHE A 49 -1 N PHE A 49 O THR A 53 SHEET 3 B12 LEU A 33 GLN A 38 -1 N GLN A 37 O LYS A 45 SHEET 4 B12 ALA A 84 GLN A 90 -1 O TYR A 87 N TYR A 36 SHEET 5 B12 THR A 101 LYS A 106 -1 O LEU A 103 N ALA A 84 SHEET 6 B12 SER A 10 SER A 14 1 N LEU A 11 O GLU A 104 SHEET 7 B12 SER C 10 SER C 14 -1 O SER C 10 N ALA A 12 SHEET 8 B12 THR C 101 LYS C 106 1 O GLU C 104 N LEU C 11 SHEET 9 B12 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 10 B12 LEU C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 11 B12 LYS C 45 PHE C 49 -1 O LYS C 45 N GLN C 37 SHEET 12 B12 THR C 53 ARG C 54 -1 O THR C 53 N PHE C 49 SHEET 1 C 8 THR A 96 PHE A 97 0 SHEET 2 C 8 ALA A 84 GLN A 90 -1 N GLN A 90 O THR A 96 SHEET 3 C 8 THR A 101 LYS A 106 -1 O LEU A 103 N ALA A 84 SHEET 4 C 8 SER A 10 SER A 14 1 N LEU A 11 O GLU A 104 SHEET 5 C 8 SER C 10 SER C 14 -1 O SER C 10 N ALA A 12 SHEET 6 C 8 THR C 101 LYS C 106 1 O GLU C 104 N LEU C 11 SHEET 7 C 8 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 8 C 8 THR C 96 PHE C 97 -1 O THR C 96 N GLN C 90 SHEET 1 D 2 LEU A 27C ASN A 27D 0 SHEET 2 D 2 LYS A 30 ASN A 31 -1 O LYS A 30 N ASN A 27D SHEET 1 E 4 THR A 113 PHE A 117 0 SHEET 2 E 4 GLY A 128 PHE A 138 -1 O VAL A 132 N PHE A 117 SHEET 3 E 4 TYR A 172 THR A 181 -1 O LEU A 180 N ALA A 129 SHEET 4 E 4 VAL A 158 TRP A 162 -1 N LEU A 159 O THR A 177 SHEET 1 F 4 SER A 152 GLU A 153 0 SHEET 2 F 4 ASN A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 F 4 SER A 190 THR A 196 -1 O THR A 196 N ASN A 144 SHEET 4 F 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SHEET 1 G 4 MET B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 G 4 ILE B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 G 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 H 6 LEU B 11 VAL B 12 0 SHEET 2 H 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 109 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 H 6 ILE B 57 TYR B 59 -1 O ASP B 58 N PHE B 50 SHEET 1 I 4 SER B 120 LEU B 124 0 SHEET 2 I 4 VAL B 136 LYS B 143 -1 O LEU B 141 N TYR B 122 SHEET 3 I 4 TYR B 175 VAL B 183 -1 O VAL B 181 N LEU B 138 SHEET 4 I 4 VAL B 163 THR B 165 -1 N HIS B 164 O SER B 180 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 VAL B 136 LYS B 143 -1 O LEU B 141 N TYR B 122 SHEET 3 J 4 TYR B 175 VAL B 183 -1 O VAL B 181 N LEU B 138 SHEET 4 J 4 VAL B 169 LEU B 170 -1 N VAL B 169 O THR B 176 SHEET 1 K 3 THR B 151 TRP B 154 0 SHEET 2 K 3 THR B 194 HIS B 199 -1 O ASN B 196 N THR B 153 SHEET 3 K 3 THR B 204 LYS B 209 -1 O LYS B 208 N CYS B 195 SHEET 1 L 4 MET C 4 SER C 7 0 SHEET 2 L 4 VAL C 19 SER C 25 -1 O SER C 22 N SER C 7 SHEET 3 L 4 ASP C 70 ILE C 75 -1 O PHE C 71 N CYS C 23 SHEET 4 L 4 PHE C 62 SER C 67 -1 N THR C 63 O THR C 74 SHEET 1 M 2 LEU C 27C ASN C 27D 0 SHEET 2 M 2 LYS C 30 ASN C 31 -1 O LYS C 30 N ASN C 27D SHEET 1 N 4 THR C 113 PHE C 117 0 SHEET 2 N 4 GLY C 128 PHE C 138 -1 O VAL C 132 N PHE C 117 SHEET 3 N 4 TYR C 172 THR C 181 -1 O TYR C 172 N PHE C 138 SHEET 4 N 4 VAL C 158 TRP C 162 -1 N LEU C 159 O THR C 177 SHEET 1 O 2 CYS C 193 ALA C 195 0 SHEET 2 O 2 ILE C 204 LYS C 206 -1 O ILE C 204 N ALA C 195 SHEET 1 P 4 MET D 3 SER D 7 0 SHEET 2 P 4 LEU D 18 SER D 25 -1 O ALA D 23 N VAL D 5 SHEET 3 P 4 ILE D 77 MET D 82 -1 O LEU D 78 N CYS D 22 SHEET 4 P 4 PHE D 67 ASP D 72 -1 N THR D 68 O GLN D 81 SHEET 1 Q 6 LEU D 11 VAL D 12 0 SHEET 2 Q 6 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 Q 6 ALA D 88 ARG D 94 -1 N TYR D 90 O THR D 107 SHEET 4 Q 6 MET D 34 GLN D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 Q 6 GLU D 46 ILE D 51 -1 O LEU D 48 N TRP D 36 SHEET 6 Q 6 ILE D 57 TYR D 59 -1 O ASP D 58 N PHE D 50 SHEET 1 R 4 LEU D 11 VAL D 12 0 SHEET 2 R 4 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 R 4 ALA D 88 ARG D 94 -1 N TYR D 90 O THR D 107 SHEET 4 R 4 TYR D 102 TRP D 103 -1 O TYR D 102 N ARG D 94 SHEET 1 S 4 SER D 120 LEU D 124 0 SHEET 2 S 4 THR D 137 LYS D 143 -1 O LEU D 141 N TYR D 122 SHEET 3 S 4 TYR D 175 THR D 182 -1 O VAL D 181 N LEU D 138 SHEET 4 S 4 VAL D 163 THR D 165 -1 N HIS D 164 O SER D 180 SHEET 1 T 4 SER D 120 LEU D 124 0 SHEET 2 T 4 THR D 137 LYS D 143 -1 O LEU D 141 N TYR D 122 SHEET 3 T 4 TYR D 175 THR D 182 -1 O VAL D 181 N LEU D 138 SHEET 4 T 4 VAL D 169 LEU D 170 -1 O VAL D 169 N THR D 176 SHEET 1 U 3 THR D 151 TRP D 154 0 SHEET 2 U 3 THR D 194 ALA D 198 -1 O ASN D 196 N THR D 153 SHEET 3 U 3 ASP D 207 LYS D 209 -1 O LYS D 208 N CYS D 195 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 4 CYS B 140 CYS B 195 1555 1555 2.03 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.03 SSBOND 6 CYS C 133 CYS C 193 1555 1555 2.04 SSBOND 7 CYS D 22 CYS D 92 1555 1555 2.04 SSBOND 8 CYS D 140 CYS D 195 1555 1555 2.03 LINK O4 KDA E 1 C2 KDO E 2 1555 1555 1.44 LINK O4 KDO E 2 C2 KDO E 3 1555 1555 1.45 LINK O4 KDA F 1 C2 KDO F 2 1555 1555 1.44 LINK O4 KDO F 2 C2 KDO F 3 1555 1555 1.47 CISPEP 1 SER A 7 PRO A 8 0 -3.32 CISPEP 2 TYR A 139 PRO A 140 0 3.55 CISPEP 3 GLY B 100B ASP B 100C 0 -13.12 CISPEP 4 GLY B 144 TYR B 145 0 -7.86 CISPEP 5 PHE B 146 PRO B 147 0 -1.53 CISPEP 6 GLU B 148 PRO B 149 0 -1.80 CISPEP 7 TRP B 188 PRO B 189 0 1.99 CISPEP 8 SER C 7 PRO C 8 0 -3.09 CISPEP 9 TYR C 139 PRO C 140 0 4.52 CISPEP 10 SER C 202 PRO C 203 0 -9.00 CISPEP 11 GLY D 100B ASP D 100C 0 -8.77 CISPEP 12 GLY D 144 TYR D 145 0 -6.44 CISPEP 13 PHE D 146 PRO D 147 0 -0.72 CISPEP 14 GLU D 148 PRO D 149 0 -3.15 CISPEP 15 TRP D 188 PRO D 189 0 1.61 CRYST1 64.980 53.360 142.230 90.00 102.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015389 0.000000 0.003308 0.00000 SCALE2 0.000000 0.018741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007191 0.00000