HEADER TRANSFERASE 25-JUN-09 3I0O TITLE CRYSTAL STRUCTURE OF SPECTINOMYCIN PHOSPHOTRANSFERASE, APH(9)-IA, IN TITLE 2 COMPLEX WITH ADP AND SPECTINOMCYIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTINOMYCIN PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APH(9)-IA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SEROGROUP 1; SOURCE 3 ORGANISM_TAXID: 66976; SOURCE 4 STRAIN: SEROGROUP 1 STRAIN 130B; SOURCE 5 GENE: APH, APH9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BB101(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS PROTEIN KINASE, AMINOGLYCOSIDE PHOSPHOTRANSFERASE, ANTIBIOTIC KEYWDS 2 RESISTANCE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.FONG,C.T.LEMKE,J.HWANG,B.XIONG,A.M.BERGHUIS REVDAT 4 03-APR-24 3I0O 1 REMARK REVDAT 3 21-FEB-24 3I0O 1 REMARK SEQADV LINK REVDAT 2 07-APR-10 3I0O 1 JRNL REVDAT 1 19-JAN-10 3I0O 0 JRNL AUTH D.H.FONG,C.T.LEMKE,J.HWANG,B.XIONG,A.M.BERGHUIS JRNL TITL STRUCTURE OF THE ANTIBIOTIC RESISTANCE FACTOR SPECTINOMYCIN JRNL TITL 2 PHOSPHOTRANSFERASE FROM LEGIONELLA PNEUMOPHILA. JRNL REF J.BIOL.CHEM. V. 285 9545 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20089863 JRNL DOI 10.1074/JBC.M109.038364 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 166795.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 17166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2149 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 256 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.76000 REMARK 3 B22 (A**2) : 1.76000 REMARK 3 B33 (A**2) : -3.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.810 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 41.36 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3I0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30700 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APO APH(9)-IA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, MAGNESIUM ACETATE, MANGANESE REMARK 280 CHLORIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.64700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.29400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.29400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.64700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.64700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 501 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 30 CB CG CD OE1 NE2 REMARK 470 ASP A 34 CB CG OD1 OD2 REMARK 470 THR A 35 CB OG1 CG2 REMARK 470 ASN A 36 CB CG OD1 ND2 REMARK 470 ALA A 37 CB REMARK 470 TYR A 57 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 92 CG CD1 CD2 REMARK 470 LYS A 93 CB CG CD CE NZ REMARK 470 HIS A 94 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 PHE A 163 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 165 CG OD1 ND2 REMARK 470 ASP A 204 CG OD1 OD2 REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 ASN A 271 CG OD1 ND2 REMARK 470 ARG A 299 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 300 CB CG OD1 ND2 REMARK 470 GLN A 301 CB CG CD OE1 NE2 REMARK 470 ASN A 302 CB CG OD1 ND2 REMARK 470 GLN A 304 CG CD OE1 NE2 REMARK 470 LEU A 332 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 9 CD OE1 NE2 REMARK 480 LYS A 87 CE NZ REMARK 480 ASN A 159 OD1 REMARK 480 ASN A 179 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NI NI A 501 O HOH A 629 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 -71.94 -40.93 REMARK 500 GLN A 30 -151.44 -74.94 REMARK 500 ASP A 34 163.61 125.30 REMARK 500 THR A 35 -93.01 47.68 REMARK 500 ALA A 37 91.69 164.55 REMARK 500 GLU A 76 28.99 -70.24 REMARK 500 PHE A 163 138.40 -38.05 REMARK 500 SER A 211 -17.56 86.50 REMARK 500 ASP A 212 42.18 -144.57 REMARK 500 ASN A 222 -83.22 -40.03 REMARK 500 GLU A 224 -8.27 70.03 REMARK 500 SER A 225 66.61 -103.14 REMARK 500 ASP A 230 64.61 61.01 REMARK 500 ARG A 299 -32.25 78.65 REMARK 500 ASN A 300 124.19 -12.70 REMARK 500 ASN A 302 11.46 -64.14 REMARK 500 GLU A 330 4.15 -64.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 217 OD1 REMARK 620 2 ASP A 230 OD2 75.8 REMARK 620 3 ADP A 500 O2A 89.8 82.7 REMARK 620 4 ADP A 500 O3B 161.3 95.6 72.4 REMARK 620 5 HOH A 642 O 82.3 157.8 93.8 104.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SMI A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 DBREF 3I0O A 1 331 UNP O06916 O06916_LEGPN 1 331 SEQADV 3I0O LEU A 332 UNP O06916 EXPRESSION TAG SEQADV 3I0O GLU A 333 UNP O06916 EXPRESSION TAG SEQADV 3I0O HIS A 334 UNP O06916 EXPRESSION TAG SEQADV 3I0O HIS A 335 UNP O06916 EXPRESSION TAG SEQADV 3I0O HIS A 336 UNP O06916 EXPRESSION TAG SEQADV 3I0O HIS A 337 UNP O06916 EXPRESSION TAG SEQADV 3I0O HIS A 338 UNP O06916 EXPRESSION TAG SEQADV 3I0O HIS A 339 UNP O06916 EXPRESSION TAG SEQRES 1 A 339 MET LEU LYS GLN PRO ILE GLN ALA GLN GLN LEU ILE GLU SEQRES 2 A 339 LEU LEU LYS VAL HIS TYR GLY ILE ASP ILE HIS THR ALA SEQRES 3 A 339 GLN PHE ILE GLN GLY GLY ALA ASP THR ASN ALA PHE ALA SEQRES 4 A 339 TYR GLN ALA ASP SER GLU SER LYS SER TYR PHE ILE LYS SEQRES 5 A 339 LEU LYS TYR GLY TYR HIS ASP GLU ILE ASN LEU SER ILE SEQRES 6 A 339 ILE ARG LEU LEU HIS ASP SER GLY ILE LYS GLU ILE ILE SEQRES 7 A 339 PHE PRO ILE HIS THR LEU GLU ALA LYS LEU PHE GLN GLN SEQRES 8 A 339 LEU LYS HIS PHE LYS ILE ILE ALA TYR PRO PHE ILE HIS SEQRES 9 A 339 ALA PRO ASN GLY PHE THR GLN ASN LEU THR GLY LYS GLN SEQRES 10 A 339 TRP LYS GLN LEU GLY LYS VAL LEU ARG GLN ILE HIS GLU SEQRES 11 A 339 THR SER VAL PRO ILE SER ILE GLN GLN GLN LEU ARG LYS SEQRES 12 A 339 GLU ILE TYR SER PRO LYS TRP ARG GLU ILE VAL ARG SER SEQRES 13 A 339 PHE TYR ASN GLN ILE GLU PHE ASP ASN SER ASP ASP LYS SEQRES 14 A 339 LEU THR ALA ALA PHE LYS SER PHE PHE ASN GLN ASN SER SEQRES 15 A 339 ALA ALA ILE HIS ARG LEU VAL ASP THR SER GLU LYS LEU SEQRES 16 A 339 SER LYS LYS ILE GLN PRO ASP LEU ASP LYS TYR VAL LEU SEQRES 17 A 339 CYS HIS SER ASP ILE HIS ALA GLY ASN VAL LEU VAL GLY SEQRES 18 A 339 ASN GLU GLU SER ILE TYR ILE ILE ASP TRP ASP GLU PRO SEQRES 19 A 339 MET LEU ALA PRO LYS GLU ARG ASP LEU MET PHE ILE GLY SEQRES 20 A 339 GLY GLY VAL GLY ASN VAL TRP ASN LYS PRO HIS GLU ILE SEQRES 21 A 339 GLN TYR PHE TYR GLU GLY TYR GLY GLU ILE ASN VAL ASP SEQRES 22 A 339 LYS THR ILE LEU SER TYR TYR ARG HIS GLU ARG ILE VAL SEQRES 23 A 339 GLU ASP ILE ALA VAL TYR GLY GLN ASP LEU LEU SER ARG SEQRES 24 A 339 ASN GLN ASN ASN GLN SER ARG LEU GLU SER PHE LYS TYR SEQRES 25 A 339 PHE LYS GLU MET PHE ASP PRO ASN ASN VAL VAL GLU ILE SEQRES 26 A 339 ALA PHE ALA THR GLU GLN LEU GLU HIS HIS HIS HIS HIS SEQRES 27 A 339 HIS HET ADP A 500 27 HET SMI A 340 24 HET NI A 501 1 HET MG A 502 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SMI SPECTINOMYCIN HETNAM NI NICKEL (II) ION HETNAM MG MAGNESIUM ION HETSYN SMI (2R,4AR,5AR,6S,7S,8R,9S,9AR,10AS)-2-METHYL-6,8- HETSYN 2 SMI BIS(METHYLAMINO)HEXAHYDRO-2H-PYRANO[2,3-B][1, HETSYN 3 SMI 4]BENZODIOXINE-4,4,4A,7,9(3H,10AH)-PENTOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 SMI C14 H26 N2 O8 FORMUL 4 NI NI 2+ FORMUL 5 MG MG 2+ FORMUL 6 HOH *48(H2 O) HELIX 1 1 GLN A 7 GLY A 20 1 14 HELIX 2 2 HIS A 58 SER A 72 1 15 HELIX 3 3 THR A 114 THR A 131 1 18 HELIX 4 4 PRO A 134 GLN A 139 1 6 HELIX 5 5 PRO A 148 ASN A 159 1 12 HELIX 6 6 ASP A 168 ASN A 181 1 14 HELIX 7 7 ASN A 181 ILE A 199 1 19 HELIX 8 8 ASP A 202 TYR A 206 5 5 HELIX 9 9 HIS A 214 GLY A 216 5 3 HELIX 10 10 LYS A 239 MET A 244 1 6 HELIX 11 11 GLY A 249 VAL A 253 5 5 HELIX 12 12 LYS A 256 GLY A 268 1 13 HELIX 13 13 ASP A 273 ARG A 299 1 27 HELIX 14 14 SER A 305 MET A 316 1 12 HELIX 15 15 ASN A 321 ALA A 328 1 8 HELIX 16 16 THR A 329 LEU A 332 5 4 SHEET 1 A 5 ILE A 23 ILE A 29 0 SHEET 2 A 5 PHE A 38 SER A 44 -1 O ALA A 39 N ILE A 29 SHEET 3 A 5 SER A 48 LYS A 54 -1 O LEU A 53 N PHE A 38 SHEET 4 A 5 LYS A 96 PRO A 101 -1 O ILE A 98 N LYS A 52 SHEET 5 A 5 GLN A 90 GLN A 91 -1 N GLN A 90 O ILE A 97 SHEET 1 B 3 ARG A 142 LYS A 143 0 SHEET 2 B 3 MET A 235 ALA A 237 1 O LEU A 236 N ARG A 142 SHEET 3 B 3 VAL A 207 CYS A 209 -1 N CYS A 209 O MET A 235 SHEET 1 C 2 VAL A 218 VAL A 220 0 SHEET 2 C 2 ILE A 226 ILE A 228 -1 O TYR A 227 N LEU A 219 LINK NE2 HIS A 70 NI NI A 501 1555 1555 2.11 LINK OD1 ASN A 217 MG MG A 502 1555 1555 2.27 LINK OD2 ASP A 230 MG MG A 502 1555 1555 2.17 LINK O2A ADP A 500 MG MG A 502 1555 1555 1.94 LINK O3B ADP A 500 MG MG A 502 1555 1555 2.55 LINK MG MG A 502 O HOH A 642 1555 1555 1.81 SITE 1 AC1 15 ALA A 33 PHE A 50 LYS A 52 ILE A 78 SITE 2 AC1 15 PRO A 101 PHE A 102 ILE A 103 ASN A 107 SITE 3 AC1 15 ASN A 217 ILE A 229 ASP A 230 MG A 502 SITE 4 AC1 15 HOH A 608 HOH A 639 HOH A 642 SITE 1 AC2 11 ASP A 212 HIS A 214 ARG A 284 ASP A 288 SITE 2 AC2 11 TYR A 292 TYR A 312 HOH A 614 HOH A 616 SITE 3 AC2 11 HOH A 627 HOH A 636 HOH A 654 SITE 1 AC3 2 HIS A 70 HOH A 629 SITE 1 AC4 4 ASN A 217 ASP A 230 ADP A 500 HOH A 642 CRYST1 75.008 75.008 139.941 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013332 0.007697 0.000000 0.00000 SCALE2 0.000000 0.015394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007146 0.00000