HEADER TRANSFERASE 25-JUN-09 3I1A TITLE CRYSTAL STRUCTURE OF APO SPECTINOMYCIN PHOSPHOTRANSFERASE, APH(9)-IA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTINOMYCIN PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 66976; SOURCE 4 STRAIN: SEROGROUP 1 STRAIN 130B; SOURCE 5 GENE: APH, APH9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BB101(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS PROTEIN KINASE, AMINOGLYCOSIDE PHOSPHOTRANSFERASE, ANTIBIOTIC KEYWDS 2 RESISTANCE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BERGHUIS,D.H.FONG,C.T.LEMKE,J.HWANG,B.XIONG REVDAT 3 21-FEB-24 3I1A 1 REMARK SEQADV REVDAT 2 07-APR-10 3I1A 1 JRNL REVDAT 1 19-JAN-10 3I1A 0 JRNL AUTH D.H.FONG,C.T.LEMKE,J.HWANG,B.XIONG,A.M.BERGHUIS JRNL TITL STRUCTURE OF THE ANTIBIOTIC RESISTANCE FACTOR SPECTINOMYCIN JRNL TITL 2 PHOSPHOTRANSFERASE FROM LEGIONELLA PNEUMOPHILA. JRNL REF J.BIOL.CHEM. V. 285 9545 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20089863 JRNL DOI 10.1074/JBC.M109.038364 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 271795.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 64182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6470 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7544 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 823 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 2.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.000 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 60.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : APH.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : APH.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3I1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100,0.979462,0.979262,0.95 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43400 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 200, PEG 3000, AMINOCAPROIC ACID, REMARK 280 DMSO, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.34750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLN A 331 REMARK 465 LEU A 332 REMARK 465 GLU A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 MET B 1001 REMARK 465 GLN B 1331 REMARK 465 LEU B 1332 REMARK 465 GLU B 1333 REMARK 465 HIS B 1334 REMARK 465 HIS B 1335 REMARK 465 HIS B 1336 REMARK 465 HIS B 1337 REMARK 465 HIS B 1338 REMARK 465 HIS B 1339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 34 CB CG OD1 OD2 REMARK 470 THR A 35 CB OG1 CG2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 ASN A 222 CB CG OD1 ND2 REMARK 470 GLU A 223 CB CG CD OE1 OE2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 ASP B1034 CB CG OD1 OD2 REMARK 470 THR B1035 CB OG1 CG2 REMARK 470 LYS B1116 CG CD CE NZ REMARK 470 GLU B1223 CG CD OE1 OE2 REMARK 470 ASN B1302 CG OD1 ND2 REMARK 470 GLN B1304 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 1222 N GLU B 1224 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 146 O HOH B 325 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 35 -128.24 63.94 REMARK 500 ALA A 37 142.37 -170.98 REMARK 500 GLU A 76 47.57 -79.31 REMARK 500 GLU A 76 47.93 -79.31 REMARK 500 SER A 211 -13.58 90.78 REMARK 500 ASP A 212 49.55 -154.01 REMARK 500 ASP A 230 74.10 66.33 REMARK 500 THR B1035 -111.19 47.45 REMARK 500 ASN B1036 75.15 -109.33 REMARK 500 HIS B1104 40.52 -107.44 REMARK 500 HIS B1104 53.97 -102.23 REMARK 500 ASP B1202 76.91 -170.71 REMARK 500 SER B1211 -11.01 85.81 REMARK 500 ASP B1212 51.51 -153.54 REMARK 500 ASN B1222 -129.54 -91.17 REMARK 500 GLU B1223 -89.82 31.76 REMARK 500 GLU B1224 16.75 -176.75 REMARK 500 ASP B1230 78.03 67.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 227 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 1340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I0O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF SPECTINOMYCIN REMARK 900 PHOSPHOTRANSFERASE, APH(9)-IA REMARK 900 RELATED ID: 3I0Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AMP-BOUND COMPLEX OF SPECTINOMYCIN REMARK 900 PHOSPHOTRANSFERASE, APH(9)-IA DBREF 3I1A A 1 331 UNP O06916 O06916_LEGPN 1 331 DBREF 3I1A B 1001 1331 UNP O06916 O06916_LEGPN 1 331 SEQADV 3I1A LEU A 332 UNP O06916 EXPRESSION TAG SEQADV 3I1A GLU A 333 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS A 334 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS A 335 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS A 336 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS A 337 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS A 338 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS A 339 UNP O06916 EXPRESSION TAG SEQADV 3I1A LEU B 1332 UNP O06916 EXPRESSION TAG SEQADV 3I1A GLU B 1333 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS B 1334 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS B 1335 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS B 1336 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS B 1337 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS B 1338 UNP O06916 EXPRESSION TAG SEQADV 3I1A HIS B 1339 UNP O06916 EXPRESSION TAG SEQRES 1 A 339 MET LEU LYS GLN PRO ILE GLN ALA GLN GLN LEU ILE GLU SEQRES 2 A 339 LEU LEU LYS VAL HIS TYR GLY ILE ASP ILE HIS THR ALA SEQRES 3 A 339 GLN PHE ILE GLN GLY GLY ALA ASP THR ASN ALA PHE ALA SEQRES 4 A 339 TYR GLN ALA ASP SER GLU SER LYS SER TYR PHE ILE LYS SEQRES 5 A 339 LEU LYS TYR GLY TYR HIS ASP GLU ILE ASN LEU SER ILE SEQRES 6 A 339 ILE ARG LEU LEU HIS ASP SER GLY ILE LYS GLU ILE ILE SEQRES 7 A 339 PHE PRO ILE HIS THR LEU GLU ALA LYS LEU PHE GLN GLN SEQRES 8 A 339 LEU LYS HIS PHE LYS ILE ILE ALA TYR PRO PHE ILE HIS SEQRES 9 A 339 ALA PRO ASN GLY PHE THR GLN ASN LEU THR GLY LYS GLN SEQRES 10 A 339 TRP LYS GLN LEU GLY LYS VAL LEU ARG GLN ILE HIS GLU SEQRES 11 A 339 THR SER VAL PRO ILE SER ILE GLN GLN GLN LEU ARG LYS SEQRES 12 A 339 GLU ILE TYR SER PRO LYS TRP ARG GLU ILE VAL ARG SER SEQRES 13 A 339 PHE TYR ASN GLN ILE GLU PHE ASP ASN SER ASP ASP LYS SEQRES 14 A 339 LEU THR ALA ALA PHE LYS SER PHE PHE ASN GLN ASN SER SEQRES 15 A 339 ALA ALA ILE HIS ARG LEU VAL ASP THR SER GLU LYS LEU SEQRES 16 A 339 SER LYS LYS ILE GLN PRO ASP LEU ASP LYS TYR VAL LEU SEQRES 17 A 339 CYS HIS SER ASP ILE HIS ALA GLY ASN VAL LEU VAL GLY SEQRES 18 A 339 ASN GLU GLU SER ILE TYR ILE ILE ASP TRP ASP GLU PRO SEQRES 19 A 339 MET LEU ALA PRO LYS GLU ARG ASP LEU MET PHE ILE GLY SEQRES 20 A 339 GLY GLY VAL GLY ASN VAL TRP ASN LYS PRO HIS GLU ILE SEQRES 21 A 339 GLN TYR PHE TYR GLU GLY TYR GLY GLU ILE ASN VAL ASP SEQRES 22 A 339 LYS THR ILE LEU SER TYR TYR ARG HIS GLU ARG ILE VAL SEQRES 23 A 339 GLU ASP ILE ALA VAL TYR GLY GLN ASP LEU LEU SER ARG SEQRES 24 A 339 ASN GLN ASN ASN GLN SER ARG LEU GLU SER PHE LYS TYR SEQRES 25 A 339 PHE LYS GLU MET PHE ASP PRO ASN ASN VAL VAL GLU ILE SEQRES 26 A 339 ALA PHE ALA THR GLU GLN LEU GLU HIS HIS HIS HIS HIS SEQRES 27 A 339 HIS SEQRES 1 B 339 MET LEU LYS GLN PRO ILE GLN ALA GLN GLN LEU ILE GLU SEQRES 2 B 339 LEU LEU LYS VAL HIS TYR GLY ILE ASP ILE HIS THR ALA SEQRES 3 B 339 GLN PHE ILE GLN GLY GLY ALA ASP THR ASN ALA PHE ALA SEQRES 4 B 339 TYR GLN ALA ASP SER GLU SER LYS SER TYR PHE ILE LYS SEQRES 5 B 339 LEU LYS TYR GLY TYR HIS ASP GLU ILE ASN LEU SER ILE SEQRES 6 B 339 ILE ARG LEU LEU HIS ASP SER GLY ILE LYS GLU ILE ILE SEQRES 7 B 339 PHE PRO ILE HIS THR LEU GLU ALA LYS LEU PHE GLN GLN SEQRES 8 B 339 LEU LYS HIS PHE LYS ILE ILE ALA TYR PRO PHE ILE HIS SEQRES 9 B 339 ALA PRO ASN GLY PHE THR GLN ASN LEU THR GLY LYS GLN SEQRES 10 B 339 TRP LYS GLN LEU GLY LYS VAL LEU ARG GLN ILE HIS GLU SEQRES 11 B 339 THR SER VAL PRO ILE SER ILE GLN GLN GLN LEU ARG LYS SEQRES 12 B 339 GLU ILE TYR SER PRO LYS TRP ARG GLU ILE VAL ARG SER SEQRES 13 B 339 PHE TYR ASN GLN ILE GLU PHE ASP ASN SER ASP ASP LYS SEQRES 14 B 339 LEU THR ALA ALA PHE LYS SER PHE PHE ASN GLN ASN SER SEQRES 15 B 339 ALA ALA ILE HIS ARG LEU VAL ASP THR SER GLU LYS LEU SEQRES 16 B 339 SER LYS LYS ILE GLN PRO ASP LEU ASP LYS TYR VAL LEU SEQRES 17 B 339 CYS HIS SER ASP ILE HIS ALA GLY ASN VAL LEU VAL GLY SEQRES 18 B 339 ASN GLU GLU SER ILE TYR ILE ILE ASP TRP ASP GLU PRO SEQRES 19 B 339 MET LEU ALA PRO LYS GLU ARG ASP LEU MET PHE ILE GLY SEQRES 20 B 339 GLY GLY VAL GLY ASN VAL TRP ASN LYS PRO HIS GLU ILE SEQRES 21 B 339 GLN TYR PHE TYR GLU GLY TYR GLY GLU ILE ASN VAL ASP SEQRES 22 B 339 LYS THR ILE LEU SER TYR TYR ARG HIS GLU ARG ILE VAL SEQRES 23 B 339 GLU ASP ILE ALA VAL TYR GLY GLN ASP LEU LEU SER ARG SEQRES 24 B 339 ASN GLN ASN ASN GLN SER ARG LEU GLU SER PHE LYS TYR SEQRES 25 B 339 PHE LYS GLU MET PHE ASP PRO ASN ASN VAL VAL GLU ILE SEQRES 26 B 339 ALA PHE ALA THR GLU GLN LEU GLU HIS HIS HIS HIS HIS SEQRES 27 B 339 HIS HET MES A 340 12 HET DMS A 341 4 HET MES B 2 12 HET MES B 3 12 HET DMS B 1 4 HET PG4 B1340 13 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 MES 3(C6 H13 N O4 S) FORMUL 4 DMS 2(C2 H6 O S) FORMUL 8 PG4 C8 H18 O5 FORMUL 9 HOH *860(H2 O) HELIX 1 1 GLN A 9 GLY A 20 1 12 HELIX 2 2 GLU A 60 SER A 72 1 13 HELIX 3 3 THR A 114 GLU A 130 1 17 HELIX 4 4 PRO A 134 GLN A 139 1 6 HELIX 5 5 PRO A 148 TYR A 158 1 11 HELIX 6 6 ASN A 159 GLU A 162 5 4 HELIX 7 7 ASP A 168 ASN A 181 1 14 HELIX 8 8 ASN A 181 ILE A 199 1 19 HELIX 9 9 ASP A 202 TYR A 206 5 5 HELIX 10 10 HIS A 214 GLY A 216 5 3 HELIX 11 11 ASN A 222 GLU A 224 5 3 HELIX 12 12 LYS A 239 MET A 244 1 6 HELIX 13 13 LYS A 256 GLY A 268 1 13 HELIX 14 14 ASP A 273 SER A 298 1 26 HELIX 15 15 ASN A 302 MET A 316 1 15 HELIX 16 16 ASN A 321 GLU A 330 1 10 HELIX 17 17 GLN B 1009 GLY B 1020 1 12 HELIX 18 18 GLU B 1060 SER B 1072 1 13 HELIX 19 19 THR B 1114 GLU B 1130 1 17 HELIX 20 20 PRO B 1134 GLN B 1139 1 6 HELIX 21 21 PRO B 1148 TYR B 1158 1 11 HELIX 22 22 ASN B 1159 ILE B 1161 5 3 HELIX 23 23 ASP B 1168 ASN B 1181 1 14 HELIX 24 24 ASN B 1181 ILE B 1199 1 19 HELIX 25 25 ASP B 1202 TYR B 1206 5 5 HELIX 26 26 HIS B 1214 GLY B 1216 5 3 HELIX 27 27 LYS B 1239 MET B 1244 1 6 HELIX 28 28 GLY B 1249 VAL B 1253 5 5 HELIX 29 29 LYS B 1256 GLY B 1268 1 13 HELIX 30 30 ASP B 1273 SER B 1298 1 26 HELIX 31 31 GLN B 1304 MET B 1316 1 13 HELIX 32 32 ASN B 1321 THR B 1329 1 9 SHEET 1 A 5 THR A 25 ILE A 29 0 SHEET 2 A 5 PHE A 38 ASP A 43 -1 O ALA A 39 N ILE A 29 SHEET 3 A 5 SER A 48 TYR A 55 -1 O TYR A 49 N ALA A 42 SHEET 4 A 5 PHE A 95 PRO A 101 -1 O TYR A 100 N PHE A 50 SHEET 5 A 5 GLN A 90 GLN A 91 -1 N GLN A 90 O ILE A 97 SHEET 1 B 3 ARG A 142 LYS A 143 0 SHEET 2 B 3 MET A 235 ALA A 237 1 O LEU A 236 N ARG A 142 SHEET 3 B 3 VAL A 207 CYS A 209 -1 N CYS A 209 O MET A 235 SHEET 1 C 2 VAL A 218 VAL A 220 0 SHEET 2 C 2 ILE A 226 ILE A 228 -1 O TYR A 227 N LEU A 219 SHEET 1 D 5 THR B1025 ILE B1029 0 SHEET 2 D 5 PHE B1038 ASP B1043 -1 O ALA B1039 N ILE B1029 SHEET 3 D 5 SER B1048 TYR B1055 -1 O TYR B1049 N ALA B1042 SHEET 4 D 5 PHE B1095 PRO B1101 -1 O LYS B1096 N LYS B1054 SHEET 5 D 5 GLN B1090 GLN B1091 -1 N GLN B1090 O ILE B1097 SHEET 1 E 3 ARG B1142 LYS B1143 0 SHEET 2 E 3 MET B1235 ALA B1237 1 O LEU B1236 N ARG B1142 SHEET 3 E 3 VAL B1207 CYS B1209 -1 N CYS B1209 O MET B1235 SHEET 1 F 2 VAL B1218 VAL B1220 0 SHEET 2 F 2 ILE B1226 ILE B1228 -1 O TYR B1227 N LEU B1219 SITE 1 AC1 9 PHE A 50 ASN A 62 ILE A 66 ILE A 229 SITE 2 AC1 9 ASP A 230 TRP A 231 HOH A 363 HOH A 380 SITE 3 AC1 9 HOH A 413 SITE 1 AC2 3 ALA A 183 ALA A 184 ARG A 187 SITE 1 AC3 12 HOH B 51 HOH B 314 HOH B 385 HOH B 450 SITE 2 AC3 12 HOH B 849 PHE B1050 ASN B1062 TYR B1100 SITE 3 AC3 12 ILE B1229 ASP B1230 TRP B1231 HOH B1348 SITE 1 AC4 9 HOH B 60 HOH B 200 HOH B 665 PHE B1109 SITE 2 AC4 9 HIS B1214 VAL B1250 GLY B1251 ARG B1284 SITE 3 AC4 9 GLU B1315 SITE 1 AC5 4 HOH B 22 VAL B1133 GLN B1138 TYR B1206 SITE 1 AC6 7 HOH B 18 HOH B 593 LYS B1119 TYR B1262 SITE 2 AC6 7 GLU B1265 GLN B1294 HOH B1345 CRYST1 47.410 70.695 99.307 90.00 95.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021093 0.000000 0.002191 0.00000 SCALE2 0.000000 0.014145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010124 0.00000