HEADER TRANSLATION 26-JUN-09 3I1F TITLE GAMMA-SUBUNIT OF THE TRANSLATION INITIATION FACTOR 2 FROM S. TITLE 2 SOLFATARICUS IN COMPLEX WITH GPP(CH2)P COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EIF-2-GAMMA, AIF2-GAMMA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: EIF2G; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS AIF2, INITIATION FACTOR 2 GAMMA SUBUNIT, INITIATION OF THE KEYWDS 2 TRANSLATION, NUCLEOTIDE BINDING, GDPCP, MRNA BINDING, GTP-BINDING, KEYWDS 3 INITIATION FACTOR, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, KEYWDS 4 TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR E.A.STOLBOUSHKINA,S.V.NIKONOV,A.D.NIKULIN,U.BLAESI,M.B.GARBER, AUTHOR 2 O.S.NIKONOV REVDAT 3 30-OCT-24 3I1F 1 REMARK REVDAT 2 01-NOV-23 3I1F 1 REMARK REVDAT 1 30-JUN-10 3I1F 0 JRNL AUTH E.A.STOLBOUSHKINA,S.V.NIKONOV,A.D.NIKULIN,U.BLAESI, JRNL AUTH 2 M.B.GARBER,O.S.NIKONOV JRNL TITL 5-PRIME-TRIPHOSPHATE END OF MRNA RECOGNIZES THE SECOND JRNL TITL 2 GTP-BINDING SITE ON THE GAMMA-SUBUNIT OF THE ARCHAEAL JRNL TITL 3 TRANSLATION INITIATION FACTOR 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 57741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.3483 - 6.6808 0.89 2603 138 0.1429 0.1676 REMARK 3 2 6.6808 - 5.3459 0.94 2738 144 0.1861 0.2806 REMARK 3 3 5.3459 - 4.6830 0.94 2777 146 0.1656 0.2133 REMARK 3 4 4.6830 - 4.2607 0.94 2726 143 0.1640 0.1837 REMARK 3 5 4.2607 - 3.9586 0.94 2757 145 0.2219 0.2592 REMARK 3 6 3.9586 - 3.7273 0.93 2737 144 0.2325 0.2978 REMARK 3 7 3.7273 - 3.5420 0.93 2701 143 0.2913 0.3697 REMARK 3 8 3.5420 - 3.3888 0.95 2760 145 0.2365 0.2713 REMARK 3 9 3.3888 - 3.2591 0.94 2792 147 0.2537 0.2858 REMARK 3 10 3.2591 - 3.1472 0.94 2758 145 0.2673 0.2701 REMARK 3 11 3.1472 - 3.0493 0.94 2747 145 0.2691 0.3098 REMARK 3 12 3.0493 - 2.9625 0.94 2730 143 0.2693 0.3209 REMARK 3 13 2.9625 - 2.8848 0.94 2750 145 0.2778 0.2935 REMARK 3 14 2.8848 - 2.8147 0.94 2738 144 0.2828 0.3355 REMARK 3 15 2.8147 - 2.7509 0.94 2762 145 0.2883 0.3518 REMARK 3 16 2.7509 - 2.6925 0.94 2764 146 0.2928 0.2806 REMARK 3 17 2.6925 - 2.6388 0.94 2744 144 0.2982 0.3078 REMARK 3 18 2.6388 - 2.5892 0.94 2718 143 0.2949 0.3262 REMARK 3 19 2.5892 - 2.5431 0.94 2765 146 0.3010 0.2921 REMARK 3 20 2.5431 - 2.5001 0.94 2768 146 0.2972 0.2976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 118.0 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A 2-415 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5586 -32.1053 -2.4265 REMARK 3 T TENSOR REMARK 3 T11: 0.7882 T22: 1.2558 REMARK 3 T33: 0.4306 T12: 0.0336 REMARK 3 T13: -0.0360 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 0.4445 L22: 0.8397 REMARK 3 L33: 1.5483 L12: -0.2244 REMARK 3 L13: 0.0002 L23: -0.3750 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: -0.0429 S13: -0.0656 REMARK 3 S21: -0.0103 S22: -0.2874 S23: 0.0927 REMARK 3 S31: -0.7568 S32: -0.1873 S33: 0.1554 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B 2-415 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5543 -56.4592 14.2712 REMARK 3 T TENSOR REMARK 3 T11: 0.8031 T22: 0.9470 REMARK 3 T33: 0.6060 T12: 0.0710 REMARK 3 T13: -0.0162 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.3347 L22: 0.0519 REMARK 3 L33: 1.7723 L12: -0.0988 REMARK 3 L13: -0.0562 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.1324 S12: 0.3770 S13: 0.0201 REMARK 3 S21: 0.2734 S22: 0.0362 S23: -0.0071 REMARK 3 S31: 0.0208 S32: -0.0609 S33: 0.0809 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B 1 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5621 -44.6832 34.9194 REMARK 3 T TENSOR REMARK 3 T11: 2.5328 T22: 2.4509 REMARK 3 T33: 2.3471 T12: 0.2585 REMARK 3 T13: -0.2397 T23: -0.1315 REMARK 3 L TENSOR REMARK 3 L11: 0.6555 L22: 0.3513 REMARK 3 L33: 0.4726 L12: -0.4645 REMARK 3 L13: -0.5179 L23: 0.3940 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: -0.0525 S13: 0.0413 REMARK 3 S21: -0.0026 S22: -0.0047 S23: 0.0004 REMARK 3 S31: -0.0661 S32: -0.0640 S33: 0.0596 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2209 -49.9325 -5.7449 REMARK 3 T TENSOR REMARK 3 T11: 2.4241 T22: 3.0140 REMARK 3 T33: 2.5403 T12: 0.1950 REMARK 3 T13: 0.0055 T23: -0.4267 REMARK 3 L TENSOR REMARK 3 L11: 1.2199 L22: 0.1362 REMARK 3 L33: 0.4374 L12: -0.1814 REMARK 3 L13: 0.5478 L23: -0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.0190 S13: -0.0168 REMARK 3 S21: -0.0112 S22: -0.0694 S23: 0.0711 REMARK 3 S31: 0.0030 S32: -0.0932 S33: 0.0892 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A 416, CHAIN B 416, 417 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1877 -50.8093 4.4547 REMARK 3 T TENSOR REMARK 3 T11: 0.7069 T22: 0.5352 REMARK 3 T33: 0.6856 T12: 0.5819 REMARK 3 T13: 0.1878 T23: 0.3449 REMARK 3 L TENSOR REMARK 3 L11: 0.6465 L22: 2.7719 REMARK 3 L33: 1.2778 L12: 0.5687 REMARK 3 L13: -0.1433 L23: 1.3687 REMARK 3 S TENSOR REMARK 3 S11: -1.2296 S12: 0.7929 S13: -1.6874 REMARK 3 S21: 0.3007 S22: 0.1835 S23: 0.1922 REMARK 3 S31: 0.3877 S32: -0.3581 S33: 0.9657 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A 417, 418, CHAIN B 418, 419 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2696 -42.1513 -8.7862 REMARK 3 T TENSOR REMARK 3 T11: 1.2252 T22: 1.9387 REMARK 3 T33: 1.0238 T12: 0.0645 REMARK 3 T13: 0.0504 T23: -0.1326 REMARK 3 L TENSOR REMARK 3 L11: 0.3218 L22: 0.2698 REMARK 3 L33: 0.4309 L12: -0.1415 REMARK 3 L13: 0.0623 L23: 0.2633 REMARK 3 S TENSOR REMARK 3 S11: -0.2263 S12: 0.4197 S13: -0.2359 REMARK 3 S21: -0.0333 S22: 0.1830 S23: 0.0090 REMARK 3 S31: -0.3908 S32: -0.2993 S33: 0.0191 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 203.3 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8148 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57747 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.830 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.78 REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PMD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% NATRIUM MALONATE DIHYDRATE, 50MM REMARK 280 GLYCINE, 3MM CDCL2 AT THE PROTEIN/NUCLEOTIDE MOLAR RATIO 1/10. REMARK 280 FOR CRYOPROTECTION ETHYLENE GLYCOL WAS ADDED TO THE RESERVOIR REMARK 280 SOLUTION AT THE FINAL CONCENTRATION OF 15% (V/V), PH4.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.04333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.08667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 17 -177.27 -58.29 REMARK 500 VAL A 18 5.69 -62.08 REMARK 500 LYS A 22 -126.64 61.47 REMARK 500 THR A 30 -120.64 -107.93 REMARK 500 TRP A 33 -157.09 -175.08 REMARK 500 HIS A 37 -75.18 -148.05 REMARK 500 SER A 38 97.00 60.64 REMARK 500 LEU A 41 -76.61 -132.69 REMARK 500 ARG A 43 48.21 -101.21 REMARK 500 MET A 45 -169.49 179.26 REMARK 500 ILE A 47 -124.96 60.55 REMARK 500 LYS A 48 -170.54 66.55 REMARK 500 CYS A 62 -164.56 -72.99 REMARK 500 SER A 76 50.52 -69.42 REMARK 500 CYS A 77 13.06 -154.33 REMARK 500 LEU A 86 -103.55 -115.12 REMARK 500 PRO A 95 15.08 -69.74 REMARK 500 HIS A 97 2.78 -152.77 REMARK 500 LEU A 100 -29.41 76.90 REMARK 500 ALA A 102 75.22 55.16 REMARK 500 LEU A 105 -3.06 65.86 REMARK 500 SER A 106 -75.44 -48.26 REMARK 500 ASN A 143 107.87 76.65 REMARK 500 THR A 170 47.15 -109.29 REMARK 500 LYS A 171 -81.90 -59.27 REMARK 500 ALA A 185 -97.19 -71.88 REMARK 500 LEU A 186 1.98 -63.68 REMARK 500 LYS A 188 78.39 -108.77 REMARK 500 ILE A 202 59.90 -93.31 REMARK 500 SER A 210 73.11 -110.97 REMARK 500 LYS A 212 103.55 -52.71 REMARK 500 GLN A 264 -141.82 48.38 REMARK 500 ARG A 280 114.33 -170.42 REMARK 500 SER A 314 -150.49 -92.92 REMARK 500 GLU A 322 86.28 -67.83 REMARK 500 ASN A 334 94.77 -177.88 REMARK 500 LYS A 343 -120.99 57.30 REMARK 500 SER A 372 128.74 177.98 REMARK 500 ALA A 387 74.54 -117.29 REMARK 500 TRP A 389 -11.08 -163.43 REMARK 500 ASN A 391 1.85 -68.12 REMARK 500 ALA A 402 -90.80 -120.55 REMARK 500 ARG A 404 -166.89 -120.27 REMARK 500 LYS B 5 42.17 -89.31 REMARK 500 PRO B 8 104.91 -58.77 REMARK 500 HIS B 17 -150.45 -107.29 REMARK 500 SER B 35 -18.95 -146.93 REMARK 500 LYS B 36 -62.25 -124.04 REMARK 500 GLU B 39 105.07 -56.63 REMARK 500 LEU B 41 -18.03 78.63 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GCP A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GCP B 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PLF RELATED DB: PDB REMARK 900 AIF2GAMMA IN THE NUCLEOTIDE-FREE FORM REMARK 900 RELATED ID: 2PMD RELATED DB: PDB REMARK 900 AIF2GAMMA IN COMPLEX WITH GDP AND GPP(NH)P DBREF 3I1F A 1 415 UNP Q980A5 IF2G_SULSO 1 415 DBREF 3I1F B 1 415 UNP Q980A5 IF2G_SULSO 1 415 SEQRES 1 A 415 MET ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY SEQRES 2 A 415 VAL VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL SEQRES 3 A 415 GLN ALA ILE THR GLY ILE TRP THR SER LYS HIS SER GLU SEQRES 4 A 415 GLU LEU LYS ARG GLY MET THR ILE LYS LEU GLY TYR ALA SEQRES 5 A 415 GLU THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS PRO SEQRES 6 A 415 GLU ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS GLY SEQRES 7 A 415 SER ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER PHE SEQRES 8 A 415 ILE ASP ALA PRO GLY HIS GLU VAL LEU MET ALA THR MET SEQRES 9 A 415 LEU SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU VAL SEQRES 10 A 415 VAL ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR ARG SEQRES 11 A 415 GLU HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS ASN SEQRES 12 A 415 LEU ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER LYS SEQRES 13 A 415 GLU GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN PHE SEQRES 14 A 415 THR LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE PRO SEQRES 15 A 415 VAL SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU ILE SEQRES 16 A 415 GLU GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG ASP SEQRES 17 A 415 LEU SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER PHE SEQRES 18 A 415 ASP VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU LYS SEQRES 19 A 415 GLY GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU PHE SEQRES 20 A 415 LYS VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU ARG SEQRES 21 A 415 VAL GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE PHE SEQRES 22 A 415 THR LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU PHE SEQRES 23 A 415 LYS GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY THR SEQRES 24 A 415 TYR LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU LEU SEQRES 25 A 415 GLY SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO VAL SEQRES 26 A 415 LEU TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU ARG SEQRES 27 A 415 VAL VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO ILE SEQRES 28 A 415 ARG ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SER SEQRES 29 A 415 THR THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP GLU SEQRES 30 A 415 ILE GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SER SEQRES 31 A 415 ASN ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA GLY SEQRES 32 A 415 ARG TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE SEQRES 1 B 415 MET ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY SEQRES 2 B 415 VAL VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL SEQRES 3 B 415 GLN ALA ILE THR GLY ILE TRP THR SER LYS HIS SER GLU SEQRES 4 B 415 GLU LEU LYS ARG GLY MET THR ILE LYS LEU GLY TYR ALA SEQRES 5 B 415 GLU THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS PRO SEQRES 6 B 415 GLU ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS GLY SEQRES 7 B 415 SER ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER PHE SEQRES 8 B 415 ILE ASP ALA PRO GLY HIS GLU VAL LEU MET ALA THR MET SEQRES 9 B 415 LEU SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU VAL SEQRES 10 B 415 VAL ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR ARG SEQRES 11 B 415 GLU HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS ASN SEQRES 12 B 415 LEU ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER LYS SEQRES 13 B 415 GLU GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN PHE SEQRES 14 B 415 THR LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE PRO SEQRES 15 B 415 VAL SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU ILE SEQRES 16 B 415 GLU GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG ASP SEQRES 17 B 415 LEU SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER PHE SEQRES 18 B 415 ASP VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU LYS SEQRES 19 B 415 GLY GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU PHE SEQRES 20 B 415 LYS VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU ARG SEQRES 21 B 415 VAL GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE PHE SEQRES 22 B 415 THR LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU PHE SEQRES 23 B 415 LYS GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY THR SEQRES 24 B 415 TYR LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU LEU SEQRES 25 B 415 GLY SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO VAL SEQRES 26 B 415 LEU TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU ARG SEQRES 27 B 415 VAL VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO ILE SEQRES 28 B 415 ARG ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SER SEQRES 29 B 415 THR THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP GLU SEQRES 30 B 415 ILE GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SER SEQRES 31 B 415 ASN ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA GLY SEQRES 32 B 415 ARG TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE HET GCP A 416 32 HET PO4 A 417 5 HET PO4 A 418 5 HET GCP B 416 32 HET PO4 B 417 5 HET PO4 B 418 5 HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER HETNAM PO4 PHOSPHATE ION FORMUL 3 GCP 2(C11 H18 N5 O13 P3) FORMUL 4 PO4 4(O4 P 3-) FORMUL 9 HOH *357(H2 O) HELIX 1 1 LYS A 22 ALA A 28 1 7 HELIX 2 2 LEU A 105 MET A 111 1 7 HELIX 3 3 GLN A 126 ILE A 139 1 14 HELIX 4 4 GLU A 157 THR A 170 1 14 HELIX 5 5 ASN A 190 GLU A 199 1 10 HELIX 6 6 ASP A 302 LYS A 307 1 6 HELIX 7 7 GLY B 21 GLY B 31 1 11 HELIX 8 8 CYS B 74 GLY B 78 5 5 HELIX 9 9 GLN B 126 ILE B 138 1 13 HELIX 10 10 GLU B 158 LYS B 171 1 14 HELIX 11 11 THR B 173 ASN B 177 5 5 HELIX 12 12 ILE B 191 GLU B 200 1 10 HELIX 13 13 ASP B 302 LYS B 307 1 6 SHEET 1 A 6 GLY A 50 GLU A 53 0 SHEET 2 A 6 SER A 90 ASP A 93 -1 O PHE A 91 N ALA A 52 SHEET 3 A 6 ASN A 11 VAL A 15 1 N ILE A 12 O SER A 90 SHEET 4 A 6 ALA A 114 ALA A 119 1 O VAL A 117 N VAL A 15 SHEET 5 A 6 LEU A 144 ASN A 149 1 O ILE A 145 N LEU A 116 SHEET 6 A 6 ILE A 180 PRO A 182 1 O ILE A 181 N ILE A 146 SHEET 1 B 3 TYR A 68 VAL A 69 0 SHEET 2 B 3 ILE A 56 VAL A 58 -1 N GLY A 57 O VAL A 69 SHEET 3 B 3 LYS A 84 ARG A 87 -1 O ARG A 87 N ILE A 56 SHEET 1 C 5 ILE A 242 GLN A 244 0 SHEET 2 C 5 VAL A 214 MET A 215 -1 N VAL A 214 O ILE A 243 SHEET 3 C 5 ILE A 315 LEU A 318 -1 O ILE A 316 N MET A 215 SHEET 4 C 5 GLU A 252 LYS A 263 -1 N LYS A 254 O THR A 317 SHEET 5 C 5 LYS A 266 LYS A 275 -1 O GLU A 270 N LEU A 259 SHEET 1 D 3 SER A 220 PHE A 221 0 SHEET 2 D 3 GLY A 235 ILE A 238 -1 N VAL A 237 O PHE A 221 SHEET 3 D 3 ILE A 297 THR A 299 -1 O ILE A 297 N ILE A 238 SHEET 1 E 7 ILE A 329 LYS A 332 0 SHEET 2 E 7 GLU A 377 LEU A 382 -1 O VAL A 380 N ILE A 329 SHEET 3 E 7 SER A 364 VAL A 373 -1 N ILE A 369 O GLU A 381 SHEET 4 E 7 THR A 356 VAL A 361 -1 N LEU A 359 O THR A 366 SHEET 5 E 7 ARG A 394 ARG A 399 -1 O SER A 398 N MET A 358 SHEET 6 E 7 ARG A 406 GLU A 414 -1 O ILE A 408 N ILE A 397 SHEET 7 E 7 ILE A 329 LYS A 332 -1 N ARG A 330 O GLU A 414 SHEET 1 F 2 ARG A 338 VAL A 339 0 SHEET 2 F 2 LEU A 346 LYS A 347 -1 O LEU A 346 N VAL A 339 SHEET 1 G 6 GLY B 50 VAL B 58 0 SHEET 2 G 6 LYS B 84 ASP B 93 -1 O ASP B 93 N GLY B 50 SHEET 3 G 6 ILE B 12 VAL B 15 1 N ILE B 12 O SER B 90 SHEET 4 G 6 GLY B 113 ALA B 119 1 O ILE B 115 N GLY B 13 SHEET 5 G 6 LEU B 144 ASN B 149 1 O VAL B 147 N VAL B 118 SHEET 6 G 6 ILE B 180 PRO B 182 1 O ILE B 181 N ILE B 146 SHEET 1 H 3 VAL B 217 ASP B 222 0 SHEET 2 H 3 GLY B 236 GLY B 240 -1 O VAL B 237 N PHE B 221 SHEET 3 H 3 ILE B 297 GLY B 298 -1 O ILE B 297 N ILE B 238 SHEET 1 I 2 PHE B 247 LYS B 248 0 SHEET 2 I 2 GLU B 288 ALA B 289 -1 O ALA B 289 N PHE B 247 SHEET 1 J 3 SER B 268 THR B 274 0 SHEET 2 J 3 ILE B 253 VAL B 261 -1 N VAL B 261 O SER B 268 SHEET 3 J 3 ILE B 315 LEU B 318 -1 O ILE B 315 N LEU B 256 SHEET 1 K 2 ARG B 280 PHE B 281 0 SHEET 2 K 2 GLU B 284 GLU B 285 -1 O GLU B 284 N PHE B 281 SHEET 1 L 6 THR B 356 MET B 358 0 SHEET 2 L 6 LEU B 367 LYS B 374 -1 O GLY B 368 N LEU B 357 SHEET 3 L 6 GLU B 377 ALA B 387 -1 O GLU B 379 N THR B 371 SHEET 4 L 6 VAL B 325 LEU B 335 -1 N TRP B 327 O LEU B 382 SHEET 5 L 6 GLY B 409 VAL B 413 -1 O LEU B 412 N LYS B 332 SHEET 6 L 6 ARG B 394 THR B 395 -1 N THR B 395 O GLY B 411 SHEET 1 M 2 ARG B 338 VAL B 339 0 SHEET 2 M 2 LEU B 346 LYS B 347 -1 O LEU B 346 N VAL B 339 SHEET 1 N 2 SER B 398 ARG B 399 0 SHEET 2 N 2 ARG B 406 MET B 407 -1 O ARG B 406 N ARG B 399 SSBOND 1 CYS A 59 CYS A 74 1555 1555 2.31 SSBOND 2 CYS A 62 CYS A 77 1555 1555 2.04 SSBOND 3 CYS B 59 CYS B 74 1555 1555 2.03 SSBOND 4 CYS B 62 CYS B 77 1555 1555 2.82 CISPEP 1 HIS A 20 GLY A 21 0 6.55 CISPEP 2 THR A 34 SER A 35 0 1.78 CISPEP 3 GLU A 39 GLU A 40 0 0.90 CISPEP 4 LYS A 64 PRO A 65 0 -1.92 CISPEP 5 PHE A 124 PRO A 125 0 -3.72 CISPEP 6 LEU A 256 PRO A 257 0 -1.35 CISPEP 7 MET B 45 THR B 46 0 -3.14 CISPEP 8 LYS B 64 PRO B 65 0 4.00 CISPEP 9 LEU B 256 PRO B 257 0 -5.76 SITE 1 AC1 11 LEU A 41 LYS A 42 ARG A 43 GLY A 44 SITE 2 AC1 11 VAL A 223 LYS A 225 SER A 278 ARG A 280 SITE 3 AC1 11 ALA A 296 HOH A 534 HOH A 571 SITE 1 AC2 7 PRO A 182 ILE A 189 ASN A 190 THR A 371 SITE 2 AC2 7 GLU A 379 HOH A 557 HOH A 564 SITE 1 AC3 5 VAL A 6 PHE A 85 HOH A 546 HOH A 562 SITE 2 AC3 5 HOH A 563 SITE 1 AC4 10 ASP B 19 HIS B 20 GLY B 21 LYS B 22 SITE 2 AC4 10 THR B 23 THR B 24 ASN B 121 LYS B 150 SITE 3 AC4 10 HOH B 421 HOH B 554 SITE 1 AC5 3 LYS B 332 ASN B 334 HOH B 470 SITE 1 AC6 6 GLY B 258 LEU B 259 ARG B 260 ASN B 310 SITE 2 AC6 6 LEU B 311 HOH B 489 CRYST1 95.770 95.770 165.130 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010442 0.006029 0.000000 0.00000 SCALE2 0.000000 0.012057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006056 0.00000