HEADER HYDROLASE 29-JUN-09 3I24 TITLE CRYSTAL STRUCTURE OF A HIT FAMILY HYDROLASE PROTEIN FROM VIBRIO TITLE 2 FISCHERI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ID VFR176 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIT FAMILY HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO FISCHERI ES114; SOURCE 3 ORGANISM_TAXID: 312309; SOURCE 4 GENE: VF_1800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS HIT FAMILY HYDROLASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SEETHARAMAN,M.ABASHIDZE,F.FOROUHAR,H.JANJUA,R.XIAO,C.CICCOSANTI, AUTHOR 2 E.L.FOOTE,T.B.ACTON,B.ROST,G.T.MONTELIONE,J.F.HUNT,L.TONG,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 21-FEB-24 3I24 1 REMARK SEQADV LINK REVDAT 2 24-JAN-18 3I24 1 AUTHOR JRNL REVDAT 1 21-JUL-09 3I24 0 JRNL AUTH J.SEETHARAMAN,M.ABASHIDZE,F.FOROUHAR,H.JANJUA,R.XIAO, JRNL AUTH 2 C.CICCOSANTI,E.L.FOOTE,T.B.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 J.F.HUNT,L.TONG JRNL TITL CRYSTAL STRUCTURE OF A HIT FAMILY HYDROLASE PROTEIN FROM JRNL TITL 2 VIBRIO FISCHERI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET ID VFR176 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 907652.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 78100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3817 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12861 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 706 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.73000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 47.60 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3I24 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.15 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.11800 REMARK 200 R SYM FOR SHELL (I) : 0.10700 REMARK 200 FOR SHELL : 18.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL 200 MM, MES PH6, PEG3350 20%, PH REMARK 280 6.15, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.65600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -209.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 142 REMARK 465 GLU B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 PRO A 7 CG CD REMARK 470 GLN B 4 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 83 -81.66 -108.48 REMARK 500 SER B 74 61.08 33.74 REMARK 500 LEU B 83 -74.98 -108.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 151 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 27 O REMARK 620 2 ILE A 31 O 141.6 REMARK 620 3 TRP A 34 N 135.2 77.7 REMARK 620 4 ARG A 117 NH2 103.4 70.0 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 157 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 39 O REMARK 620 2 LEU A 90 O 118.8 REMARK 620 3 HOH A 197 O 105.0 134.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 156 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 48 N REMARK 620 2 HOH A 221 O 107.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 153 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 83 N REMARK 620 2 HIS A 91 O 109.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 160 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 96 O REMARK 620 2 ASP A 101 OD2 107.0 REMARK 620 3 HOH A 242 O 125.0 122.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 158 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 113 N REMARK 620 2 THR A 113 OG1 61.3 REMARK 620 3 HOH A 174 O 94.9 87.4 REMARK 620 4 HOH A 204 O 159.2 118.7 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 152 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 171 O REMARK 620 2 HOH B 177 O 90.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 150 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 27 O REMARK 620 2 ILE B 31 O 144.8 REMARK 620 3 TRP B 34 N 136.3 76.5 REMARK 620 4 ARG B 117 NH2 97.5 75.1 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 157 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 39 O REMARK 620 2 LEU B 90 O 121.5 REMARK 620 3 HOH B 222 O 102.3 129.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 153 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 53 O REMARK 620 2 HOH B 161 O 116.1 REMARK 620 3 HOH B 412 O 92.1 128.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 151 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 62 OG REMARK 620 2 SER B 63 OG 116.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 152 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 83 N REMARK 620 2 HIS B 91 O 112.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 156 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 96 O REMARK 620 2 ASP B 101 OD2 108.9 REMARK 620 3 HOH B 164 O 127.7 119.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 155 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 209 O REMARK 620 2 HOH B 236 O 88.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: VFR176 RELATED DB: TARGETDB DBREF 3I24 A 1 141 UNP Q5E3V1 Q5E3V1_VIBF1 1 141 DBREF 3I24 B 1 141 UNP Q5E3V1 Q5E3V1_VIBF1 1 141 SEQADV 3I24 LEU A 142 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 GLU A 143 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS A 144 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS A 145 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS A 146 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS A 147 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS A 148 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS A 149 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 LEU B 142 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 GLU B 143 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS B 144 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS B 145 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS B 146 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS B 147 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS B 148 UNP Q5E3V1 EXPRESSION TAG SEQADV 3I24 HIS B 149 UNP Q5E3V1 EXPRESSION TAG SEQRES 1 A 149 MET ALA PHE GLN LEU HIS PRO ARG LEU GLN GLN ASP CYS SEQRES 2 A 149 ILE VAL LEU GLY ASN LEU PRO LEU CYS LYS VAL LEU LEU SEQRES 3 A 149 ILE LYS GLU ASP ILE GLY PRO TRP LEU ILE LEU VAL PRO SEQRES 4 A 149 ARG ILE GLU GLU LEU LYS GLU ILE HIS HIS MET THR ASP SEQRES 5 A 149 GLU GLN GLN ILE GLN PHE ILE LYS GLU SER SER ALA VAL SEQRES 6 A 149 ALA GLN LEU LEU GLU ASP ASN PHE SER PRO ASP LYS ILE SEQRES 7 A 149 ASN ILE GLY ALA LEU GLY ASN LEU VAL PRO GLN LEU HIS SEQRES 8 A 149 ILE HIS HIS ILE ALA ARG PHE THR THR ASP VAL ALA TRP SEQRES 9 A 149 PRO GLY PRO VAL TRP GLY ASN THR THR GLY VAL ILE ARG SEQRES 10 A 149 ALA GLN SER SER GLN THR GLN LEU VAL ASP LEU LEU ARG SEQRES 11 A 149 ASP LYS LEU SER ASN ILE SER GLY PHE LYS ARG LEU GLU SEQRES 12 A 149 HIS HIS HIS HIS HIS HIS SEQRES 1 B 149 MET ALA PHE GLN LEU HIS PRO ARG LEU GLN GLN ASP CYS SEQRES 2 B 149 ILE VAL LEU GLY ASN LEU PRO LEU CYS LYS VAL LEU LEU SEQRES 3 B 149 ILE LYS GLU ASP ILE GLY PRO TRP LEU ILE LEU VAL PRO SEQRES 4 B 149 ARG ILE GLU GLU LEU LYS GLU ILE HIS HIS MET THR ASP SEQRES 5 B 149 GLU GLN GLN ILE GLN PHE ILE LYS GLU SER SER ALA VAL SEQRES 6 B 149 ALA GLN LEU LEU GLU ASP ASN PHE SER PRO ASP LYS ILE SEQRES 7 B 149 ASN ILE GLY ALA LEU GLY ASN LEU VAL PRO GLN LEU HIS SEQRES 8 B 149 ILE HIS HIS ILE ALA ARG PHE THR THR ASP VAL ALA TRP SEQRES 9 B 149 PRO GLY PRO VAL TRP GLY ASN THR THR GLY VAL ILE ARG SEQRES 10 B 149 ALA GLN SER SER GLN THR GLN LEU VAL ASP LEU LEU ARG SEQRES 11 B 149 ASP LYS LEU SER ASN ILE SER GLY PHE LYS ARG LEU GLU SEQRES 12 B 149 HIS HIS HIS HIS HIS HIS HET NA A 150 1 HET NA A 151 1 HET NA A 152 1 HET NA A 153 1 HET NA A 154 1 HET NA A 155 1 HET NA A 156 1 HET NA A 157 1 HET NA A 158 1 HET NA A 159 1 HET NA A 160 1 HET NA B 150 1 HET NA B 151 1 HET NA B 152 1 HET NA B 153 1 HET NA B 154 1 HET NA B 155 1 HET NA B 156 1 HET NA B 157 1 HETNAM NA SODIUM ION FORMUL 3 NA 19(NA 1+) FORMUL 22 HOH *420(H2 O) HELIX 1 1 HIS A 6 ASP A 12 1 7 HELIX 2 2 GLU A 46 MET A 50 5 5 HELIX 3 3 THR A 51 SER A 74 1 24 HELIX 4 4 ALA A 118 SER A 134 1 17 HELIX 5 5 HIS B 6 ASP B 12 1 7 HELIX 6 6 GLU B 46 MET B 50 5 5 HELIX 7 7 THR B 51 SER B 74 1 24 HELIX 8 8 ALA B 118 SER B 134 1 17 SHEET 1 A11 LYS A 140 ARG A 141 0 SHEET 2 A11 CYS A 13 ASN A 18 -1 N ASN A 18 O LYS A 140 SHEET 3 A11 CYS A 22 ILE A 27 -1 O VAL A 24 N GLY A 17 SHEET 4 A11 TRP A 34 PRO A 39 -1 O TRP A 34 N ILE A 27 SHEET 5 A11 ILE A 92 ARG A 97 -1 O HIS A 94 N LEU A 35 SHEET 6 A11 LYS A 77 ALA A 82 -1 N LYS A 77 O ARG A 97 SHEET 7 A11 LYS B 77 ALA B 82 -1 O ALA B 82 N ILE A 80 SHEET 8 A11 ILE B 92 ARG B 97 -1 O ARG B 97 N LYS B 77 SHEET 9 A11 TRP B 34 PRO B 39 -1 N LEU B 35 O HIS B 94 SHEET 10 A11 CYS B 22 ILE B 27 -1 N ILE B 27 O TRP B 34 SHEET 11 A11 CYS B 13 ASN B 18 -1 N GLY B 17 O VAL B 24 LINK O ILE A 27 NA NA A 151 1555 1555 2.84 LINK O ILE A 31 NA NA A 151 1555 1555 2.85 LINK N TRP A 34 NA NA A 151 1555 1555 2.98 LINK O PRO A 39 NA NA A 157 1555 1555 2.87 LINK N HIS A 48 NA NA A 156 1555 1555 2.96 LINK N LEU A 83 NA NA A 153 1555 1555 2.84 LINK O LEU A 90 NA NA A 157 1555 1555 2.87 LINK O HIS A 91 NA NA A 153 1555 1555 2.78 LINK O ALA A 96 NA NA A 160 1555 1555 2.80 LINK OG1 THR A 99 NA NA A 159 1555 1555 2.79 LINK OD2 ASP A 101 NA NA A 160 1555 1555 2.90 LINK N VAL A 108 NA NA A 154 1555 1555 2.98 LINK N THR A 113 NA NA A 158 1555 1555 2.92 LINK OG1 THR A 113 NA NA A 158 1555 1555 2.87 LINK NH2 ARG A 117 NA NA A 151 1555 1555 2.89 LINK NA NA A 152 O HOH A 171 1555 1555 2.85 LINK NA NA A 152 O HOH B 177 1555 1555 2.91 LINK NA NA A 155 O HOH B 230 1555 1555 2.83 LINK NA NA A 156 O HOH A 221 1555 1555 2.80 LINK NA NA A 157 O HOH A 197 1555 1555 2.95 LINK NA NA A 158 O HOH A 174 1555 1555 2.81 LINK NA NA A 158 O HOH A 204 1555 1555 2.83 LINK NA NA A 160 O HOH A 242 1555 1555 2.84 LINK O ILE B 27 NA NA B 150 1555 1555 2.82 LINK O ILE B 31 NA NA B 150 1555 1555 2.81 LINK N TRP B 34 NA NA B 150 1555 1555 2.99 LINK O PRO B 39 NA NA B 157 1555 1555 2.80 LINK O GLU B 53 NA NA B 153 1555 1555 2.81 LINK OG SER B 62 NA NA B 151 1555 1555 2.95 LINK OG SER B 63 NA NA B 151 1555 1555 2.94 LINK N LEU B 83 NA NA B 152 1555 1555 2.91 LINK O LEU B 90 NA NA B 157 1555 1555 2.85 LINK O HIS B 91 NA NA B 152 1555 1555 2.76 LINK O ALA B 96 NA NA B 156 1555 1555 2.87 LINK OD2 ASP B 101 NA NA B 156 1555 1555 2.84 LINK N VAL B 108 NA NA B 154 1555 1555 2.97 LINK NH2 ARG B 117 NA NA B 150 1555 1555 2.95 LINK NA NA B 153 O HOH B 161 1555 1555 2.79 LINK NA NA B 153 O HOH B 412 1555 1555 2.96 LINK NA NA B 155 O HOH B 209 1555 1555 2.81 LINK NA NA B 155 O HOH B 236 1555 1555 2.89 LINK NA NA B 156 O HOH B 164 1555 1555 2.83 LINK NA NA B 157 O HOH B 222 1555 1555 2.87 CISPEP 1 GLY A 32 PRO A 33 0 0.46 CISPEP 2 TRP A 104 PRO A 105 0 0.50 CISPEP 3 GLY B 32 PRO B 33 0 0.35 CISPEP 4 TRP B 104 PRO B 105 0 -0.05 SITE 1 AC1 7 LEU A 83 GLY A 84 HIS A 91 HIS A 93 SITE 2 AC1 7 NA A 153 HOH A 183 HOH A 312 SITE 1 AC2 6 LEU A 26 ILE A 27 GLU A 29 ILE A 31 SITE 2 AC2 6 TRP A 34 ARG A 117 SITE 1 AC3 5 LEU A 90 HIS A 91 NA A 153 HOH A 171 SITE 2 AC3 5 HOH B 177 SITE 1 AC4 6 LEU A 83 GLY A 84 HIS A 91 HIS A 93 SITE 2 AC4 6 NA A 150 NA A 152 SITE 1 AC5 5 ASN A 79 ARG A 97 PRO A 107 VAL A 108 SITE 2 AC5 5 TRP A 109 SITE 1 AC6 5 SER A 62 SER A 63 ILE A 80 ILE B 47 SITE 2 AC6 5 HOH B 230 SITE 1 AC7 6 ILE A 47 HIS A 48 HOH A 221 ALA B 66 SITE 2 AC7 6 ILE B 80 NA B 151 SITE 1 AC8 3 PRO A 39 LEU A 90 HOH A 197 SITE 1 AC9 4 THR A 112 THR A 113 HOH A 174 HOH A 204 SITE 1 BC1 2 THR A 99 THR A 100 SITE 1 BC2 6 ILE A 31 GLY A 32 ALA A 96 PHE A 98 SITE 2 BC2 6 ASP A 101 HOH A 242 SITE 1 BC3 6 LEU B 26 ILE B 27 GLU B 29 ILE B 31 SITE 2 BC3 6 TRP B 34 ARG B 117 SITE 1 BC4 5 ILE A 47 NA A 156 SER B 62 SER B 63 SITE 2 BC4 5 ILE B 80 SITE 1 BC5 5 LEU B 83 GLY B 84 HIS B 91 HIS B 93 SITE 2 BC5 5 NA B 155 SITE 1 BC6 5 VAL A 115 ILE A 116 GLU B 53 HOH B 161 SITE 2 BC6 5 HOH B 412 SITE 1 BC7 5 ASN B 79 ARG B 97 PRO B 107 VAL B 108 SITE 2 BC7 5 TRP B 109 SITE 1 BC8 6 GLY B 84 LEU B 90 HIS B 91 NA B 152 SITE 2 BC8 6 HOH B 209 HOH B 236 SITE 1 BC9 6 ILE B 31 GLY B 32 ALA B 96 PHE B 98 SITE 2 BC9 6 ASP B 101 HOH B 164 SITE 1 CC1 3 PRO B 39 LEU B 90 HOH B 222 CRYST1 43.433 69.312 49.077 90.00 109.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023024 0.000000 0.008125 0.00000 SCALE2 0.000000 0.014428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021608 0.00000