data_3I3M # _entry.id 3I3M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I3M pdb_00003i3m 10.2210/pdb3i3m/pdb NDB NA0059 ? ? RCSB RCSB053921 ? ? WWPDB D_1000053921 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3I3M _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-30 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FDH 'same protein with different methylated DNA substrate' unspecified PDB 2IUW homologue unspecified PDB 3BUC homologue unspecified PDB 3I3Q . unspecified PDB 3I2O . unspecified PDB 3I49 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yu, B.' 1 'Hunt, J.F.' 2 # _citation.id primary _citation.title 'Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 14315 _citation.page_last 14320 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19706517 _citation.pdbx_database_id_DOI 10.1073/pnas.0812938106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yu, B.' 1 ? primary 'Hunt, J.F.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB' 23610.975 1 1.14.11.- ? 'UNP residues 12-216' ? 2 polymer syn ;DNA (5'-D(P*TP*(ME6)P*T)-3') ; 867.645 1 ? ? ? ? 3 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 water nat water 18.015 148 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLL EHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKENLYFQ ; ;MQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLL EHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKENLYFQ ; A ? 2 polydeoxyribonucleotide no yes '(DT)(ME6)(DT)' TXT B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '2-OXOGLUTARIC ACID' AKG 4 'MANGANESE (II) ION' MN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 GLU n 1 4 PRO n 1 5 LEU n 1 6 ALA n 1 7 ALA n 1 8 GLY n 1 9 ALA n 1 10 VAL n 1 11 ILE n 1 12 LEU n 1 13 ARG n 1 14 ARG n 1 15 PHE n 1 16 ALA n 1 17 PHE n 1 18 ASN n 1 19 ALA n 1 20 ALA n 1 21 GLU n 1 22 GLN n 1 23 LEU n 1 24 ILE n 1 25 ARG n 1 26 ASP n 1 27 ILE n 1 28 ASN n 1 29 ASP n 1 30 VAL n 1 31 ALA n 1 32 SER n 1 33 GLN n 1 34 SER n 1 35 PRO n 1 36 PHE n 1 37 ARG n 1 38 GLN n 1 39 MET n 1 40 VAL n 1 41 THR n 1 42 PRO n 1 43 GLY n 1 44 GLY n 1 45 TYR n 1 46 THR n 1 47 MET n 1 48 SER n 1 49 VAL n 1 50 ALA n 1 51 MET n 1 52 THR n 1 53 ASN n 1 54 CYS n 1 55 GLY n 1 56 HIS n 1 57 LEU n 1 58 GLY n 1 59 TRP n 1 60 THR n 1 61 THR n 1 62 HIS n 1 63 ARG n 1 64 GLN n 1 65 GLY n 1 66 TYR n 1 67 LEU n 1 68 TYR n 1 69 SER n 1 70 PRO n 1 71 ILE n 1 72 ASP n 1 73 PRO n 1 74 GLN n 1 75 THR n 1 76 ASN n 1 77 LYS n 1 78 PRO n 1 79 TRP n 1 80 PRO n 1 81 ALA n 1 82 MET n 1 83 PRO n 1 84 GLN n 1 85 SER n 1 86 PHE n 1 87 HIS n 1 88 ASN n 1 89 LEU n 1 90 CYS n 1 91 GLN n 1 92 ARG n 1 93 ALA n 1 94 ALA n 1 95 THR n 1 96 ALA n 1 97 ALA n 1 98 GLY n 1 99 TYR n 1 100 PRO n 1 101 ASP n 1 102 PHE n 1 103 GLN n 1 104 PRO n 1 105 ASP n 1 106 ALA n 1 107 CYS n 1 108 LEU n 1 109 ILE n 1 110 ASN n 1 111 ARG n 1 112 TYR n 1 113 ALA n 1 114 PRO n 1 115 GLY n 1 116 ALA n 1 117 LYS n 1 118 LEU n 1 119 SER n 1 120 LEU n 1 121 HIS n 1 122 GLN n 1 123 ASP n 1 124 LYS n 1 125 ASP n 1 126 GLU n 1 127 PRO n 1 128 ASP n 1 129 LEU n 1 130 ARG n 1 131 ALA n 1 132 PRO n 1 133 ILE n 1 134 VAL n 1 135 SER n 1 136 VAL n 1 137 SER n 1 138 LEU n 1 139 GLY n 1 140 LEU n 1 141 PRO n 1 142 ALA n 1 143 ILE n 1 144 PHE n 1 145 GLN n 1 146 PHE n 1 147 GLY n 1 148 GLY n 1 149 LEU n 1 150 LYS n 1 151 ARG n 1 152 ASN n 1 153 ASP n 1 154 PRO n 1 155 LEU n 1 156 LYS n 1 157 ARG n 1 158 LEU n 1 159 LEU n 1 160 LEU n 1 161 GLU n 1 162 HIS n 1 163 GLY n 1 164 ASP n 1 165 VAL n 1 166 VAL n 1 167 VAL n 1 168 TRP n 1 169 GLY n 1 170 GLY n 1 171 GLU n 1 172 SER n 1 173 ARG n 1 174 LEU n 1 175 PHE n 1 176 TYR n 1 177 HIS n 1 178 GLY n 1 179 ILE n 1 180 GLN n 1 181 PRO n 1 182 LEU n 1 183 LYS n 1 184 ALA n 1 185 GLY n 1 186 PHE n 1 187 HIS n 1 188 PRO n 1 189 LEU n 1 190 THR n 1 191 ILE n 1 192 ASP n 1 193 CYS n 1 194 ARG n 1 195 TYR n 1 196 ASN n 1 197 LEU n 1 198 THR n 1 199 PHE n 1 200 ARG n 1 201 GLN n 1 202 ALA n 1 203 GLY n 1 204 LYS n 1 205 LYS n 1 206 GLU n 1 207 ASN n 1 208 LEU n 1 209 TYR n 1 210 PHE n 1 211 GLN n 2 1 DT n 2 2 ME6 n 2 3 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'aidD, alkB, b2212, JW2200' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET26b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 ME6 'DNA linking' n '[(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate' ? 'C10 H17 N3 O7 P 1' 322.232 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 11 ? ? ? A . n A 1 2 GLN 2 12 ? ? ? A . n A 1 3 GLU 3 13 ? ? ? A . n A 1 4 PRO 4 14 ? ? ? A . n A 1 5 LEU 5 15 15 LEU LEU A . n A 1 6 ALA 6 16 16 ALA ALA A . n A 1 7 ALA 7 17 17 ALA ALA A . n A 1 8 GLY 8 18 18 GLY GLY A . n A 1 9 ALA 9 19 19 ALA ALA A . n A 1 10 VAL 10 20 20 VAL VAL A . n A 1 11 ILE 11 21 21 ILE ILE A . n A 1 12 LEU 12 22 22 LEU LEU A . n A 1 13 ARG 13 23 23 ARG ARG A . n A 1 14 ARG 14 24 24 ARG ARG A . n A 1 15 PHE 15 25 25 PHE PHE A . n A 1 16 ALA 16 26 26 ALA ALA A . n A 1 17 PHE 17 27 27 PHE PHE A . n A 1 18 ASN 18 28 28 ASN ASN A . n A 1 19 ALA 19 29 29 ALA ALA A . n A 1 20 ALA 20 30 30 ALA ALA A . n A 1 21 GLU 21 31 31 GLU GLU A . n A 1 22 GLN 22 32 32 GLN GLN A . n A 1 23 LEU 23 33 33 LEU LEU A . n A 1 24 ILE 24 34 34 ILE ILE A . n A 1 25 ARG 25 35 35 ARG ARG A . n A 1 26 ASP 26 36 36 ASP ASP A . n A 1 27 ILE 27 37 37 ILE ILE A . n A 1 28 ASN 28 38 38 ASN ASN A . n A 1 29 ASP 29 39 39 ASP ASP A . n A 1 30 VAL 30 40 40 VAL VAL A . n A 1 31 ALA 31 41 41 ALA ALA A . n A 1 32 SER 32 42 42 SER SER A . n A 1 33 GLN 33 43 43 GLN GLN A . n A 1 34 SER 34 44 44 SER SER A . n A 1 35 PRO 35 45 45 PRO PRO A . n A 1 36 PHE 36 46 46 PHE PHE A . n A 1 37 ARG 37 47 47 ARG ARG A . n A 1 38 GLN 38 48 48 GLN GLN A . n A 1 39 MET 39 49 49 MET MET A . n A 1 40 VAL 40 50 50 VAL VAL A . n A 1 41 THR 41 51 51 THR THR A . n A 1 42 PRO 42 52 52 PRO PRO A . n A 1 43 GLY 43 53 53 GLY GLY A . n A 1 44 GLY 44 54 54 GLY GLY A . n A 1 45 TYR 45 55 55 TYR TYR A . n A 1 46 THR 46 56 56 THR THR A . n A 1 47 MET 47 57 57 MET MET A . n A 1 48 SER 48 58 58 SER SER A . n A 1 49 VAL 49 59 59 VAL VAL A . n A 1 50 ALA 50 60 60 ALA ALA A . n A 1 51 MET 51 61 61 MET MET A . n A 1 52 THR 52 62 62 THR THR A . n A 1 53 ASN 53 63 63 ASN ASN A . n A 1 54 CYS 54 64 64 CYS CYS A . n A 1 55 GLY 55 65 65 GLY GLY A . n A 1 56 HIS 56 66 66 HIS HIS A . n A 1 57 LEU 57 67 67 LEU LEU A . n A 1 58 GLY 58 68 68 GLY GLY A . n A 1 59 TRP 59 69 69 TRP TRP A . n A 1 60 THR 60 70 70 THR THR A . n A 1 61 THR 61 71 71 THR THR A . n A 1 62 HIS 62 72 72 HIS HIS A . n A 1 63 ARG 63 73 73 ARG ARG A . n A 1 64 GLN 64 74 74 GLN GLN A . n A 1 65 GLY 65 75 75 GLY GLY A . n A 1 66 TYR 66 76 76 TYR TYR A . n A 1 67 LEU 67 77 77 LEU LEU A . n A 1 68 TYR 68 78 78 TYR TYR A . n A 1 69 SER 69 79 79 SER SER A . n A 1 70 PRO 70 80 80 PRO PRO A . n A 1 71 ILE 71 81 81 ILE ILE A . n A 1 72 ASP 72 82 82 ASP ASP A . n A 1 73 PRO 73 83 83 PRO PRO A . n A 1 74 GLN 74 84 84 GLN GLN A . n A 1 75 THR 75 85 85 THR THR A . n A 1 76 ASN 76 86 86 ASN ASN A . n A 1 77 LYS 77 87 87 LYS LYS A . n A 1 78 PRO 78 88 88 PRO PRO A . n A 1 79 TRP 79 89 89 TRP TRP A . n A 1 80 PRO 80 90 90 PRO PRO A . n A 1 81 ALA 81 91 91 ALA ALA A . n A 1 82 MET 82 92 92 MET MET A . n A 1 83 PRO 83 93 93 PRO PRO A . n A 1 84 GLN 84 94 94 GLN GLN A . n A 1 85 SER 85 95 95 SER SER A . n A 1 86 PHE 86 96 96 PHE PHE A . n A 1 87 HIS 87 97 97 HIS HIS A . n A 1 88 ASN 88 98 98 ASN ASN A . n A 1 89 LEU 89 99 99 LEU LEU A . n A 1 90 CYS 90 100 100 CYS CYS A . n A 1 91 GLN 91 101 101 GLN GLN A . n A 1 92 ARG 92 102 102 ARG ARG A . n A 1 93 ALA 93 103 103 ALA ALA A . n A 1 94 ALA 94 104 104 ALA ALA A . n A 1 95 THR 95 105 105 THR THR A . n A 1 96 ALA 96 106 106 ALA ALA A . n A 1 97 ALA 97 107 107 ALA ALA A . n A 1 98 GLY 98 108 108 GLY GLY A . n A 1 99 TYR 99 109 109 TYR TYR A . n A 1 100 PRO 100 110 110 PRO PRO A . n A 1 101 ASP 101 111 111 ASP ASP A . n A 1 102 PHE 102 112 112 PHE PHE A . n A 1 103 GLN 103 113 113 GLN GLN A . n A 1 104 PRO 104 114 114 PRO PRO A . n A 1 105 ASP 105 115 115 ASP ASP A . n A 1 106 ALA 106 116 116 ALA ALA A . n A 1 107 CYS 107 117 117 CYS CYS A . n A 1 108 LEU 108 118 118 LEU LEU A . n A 1 109 ILE 109 119 119 ILE ILE A . n A 1 110 ASN 110 120 120 ASN ASN A . n A 1 111 ARG 111 121 121 ARG ARG A . n A 1 112 TYR 112 122 122 TYR TYR A . n A 1 113 ALA 113 123 123 ALA ALA A . n A 1 114 PRO 114 124 124 PRO PRO A . n A 1 115 GLY 115 125 125 GLY GLY A . n A 1 116 ALA 116 126 126 ALA ALA A . n A 1 117 LYS 117 127 127 LYS LYS A . n A 1 118 LEU 118 128 128 LEU LEU A . n A 1 119 SER 119 129 129 SER SER A . n A 1 120 LEU 120 130 130 LEU LEU A . n A 1 121 HIS 121 131 131 HIS HIS A . n A 1 122 GLN 122 132 132 GLN GLN A . n A 1 123 ASP 123 133 133 ASP ASP A . n A 1 124 LYS 124 134 134 LYS LYS A . n A 1 125 ASP 125 135 135 ASP ASP A . n A 1 126 GLU 126 136 136 GLU GLU A . n A 1 127 PRO 127 137 137 PRO PRO A . n A 1 128 ASP 128 138 138 ASP ASP A . n A 1 129 LEU 129 139 139 LEU LEU A . n A 1 130 ARG 130 140 140 ARG ARG A . n A 1 131 ALA 131 141 141 ALA ALA A . n A 1 132 PRO 132 142 142 PRO PRO A . n A 1 133 ILE 133 143 143 ILE ILE A . n A 1 134 VAL 134 144 144 VAL VAL A . n A 1 135 SER 135 145 145 SER SER A . n A 1 136 VAL 136 146 146 VAL VAL A . n A 1 137 SER 137 147 147 SER SER A . n A 1 138 LEU 138 148 148 LEU LEU A . n A 1 139 GLY 139 149 149 GLY GLY A . n A 1 140 LEU 140 150 150 LEU LEU A . n A 1 141 PRO 141 151 151 PRO PRO A . n A 1 142 ALA 142 152 152 ALA ALA A . n A 1 143 ILE 143 153 153 ILE ILE A . n A 1 144 PHE 144 154 154 PHE PHE A . n A 1 145 GLN 145 155 155 GLN GLN A . n A 1 146 PHE 146 156 156 PHE PHE A . n A 1 147 GLY 147 157 157 GLY GLY A . n A 1 148 GLY 148 158 158 GLY GLY A . n A 1 149 LEU 149 159 159 LEU LEU A . n A 1 150 LYS 150 160 160 LYS LYS A . n A 1 151 ARG 151 161 161 ARG ARG A . n A 1 152 ASN 152 162 162 ASN ASN A . n A 1 153 ASP 153 163 163 ASP ASP A . n A 1 154 PRO 154 164 164 PRO PRO A . n A 1 155 LEU 155 165 165 LEU LEU A . n A 1 156 LYS 156 166 166 LYS LYS A . n A 1 157 ARG 157 167 167 ARG ARG A . n A 1 158 LEU 158 168 168 LEU LEU A . n A 1 159 LEU 159 169 169 LEU LEU A . n A 1 160 LEU 160 170 170 LEU LEU A . n A 1 161 GLU 161 171 171 GLU GLU A . n A 1 162 HIS 162 172 172 HIS HIS A . n A 1 163 GLY 163 173 173 GLY GLY A . n A 1 164 ASP 164 174 174 ASP ASP A . n A 1 165 VAL 165 175 175 VAL VAL A . n A 1 166 VAL 166 176 176 VAL VAL A . n A 1 167 VAL 167 177 177 VAL VAL A . n A 1 168 TRP 168 178 178 TRP TRP A . n A 1 169 GLY 169 179 179 GLY GLY A . n A 1 170 GLY 170 180 180 GLY GLY A . n A 1 171 GLU 171 181 181 GLU GLU A . n A 1 172 SER 172 182 182 SER SER A . n A 1 173 ARG 173 183 183 ARG ARG A . n A 1 174 LEU 174 184 184 LEU LEU A . n A 1 175 PHE 175 185 185 PHE PHE A . n A 1 176 TYR 176 186 186 TYR TYR A . n A 1 177 HIS 177 187 187 HIS HIS A . n A 1 178 GLY 178 188 188 GLY GLY A . n A 1 179 ILE 179 189 189 ILE ILE A . n A 1 180 GLN 180 190 190 GLN GLN A . n A 1 181 PRO 181 191 191 PRO PRO A . n A 1 182 LEU 182 192 192 LEU LEU A . n A 1 183 LYS 183 193 193 LYS LYS A . n A 1 184 ALA 184 194 194 ALA ALA A . n A 1 185 GLY 185 195 195 GLY GLY A . n A 1 186 PHE 186 196 196 PHE PHE A . n A 1 187 HIS 187 197 197 HIS HIS A . n A 1 188 PRO 188 198 198 PRO PRO A . n A 1 189 LEU 189 199 199 LEU LEU A . n A 1 190 THR 190 200 200 THR THR A . n A 1 191 ILE 191 201 201 ILE ILE A . n A 1 192 ASP 192 202 202 ASP ASP A . n A 1 193 CYS 193 203 203 CYS CYS A . n A 1 194 ARG 194 204 204 ARG ARG A . n A 1 195 TYR 195 205 205 TYR TYR A . n A 1 196 ASN 196 206 206 ASN ASN A . n A 1 197 LEU 197 207 207 LEU LEU A . n A 1 198 THR 198 208 208 THR THR A . n A 1 199 PHE 199 209 209 PHE PHE A . n A 1 200 ARG 200 210 210 ARG ARG A . n A 1 201 GLN 201 211 211 GLN GLN A . n A 1 202 ALA 202 212 212 ALA ALA A . n A 1 203 GLY 203 213 213 GLY GLY A . n A 1 204 LYS 204 214 214 LYS LYS A . n A 1 205 LYS 205 215 ? ? ? A . n A 1 206 GLU 206 216 ? ? ? A . n A 1 207 ASN 207 217 ? ? ? A . n A 1 208 LEU 208 218 ? ? ? A . n A 1 209 TYR 209 219 ? ? ? A . n A 1 210 PHE 210 220 ? ? ? A . n A 1 211 GLN 211 221 ? ? ? A . n B 2 1 DT 1 501 501 DT DT B . n B 2 2 ME6 2 502 502 ME6 ME6 B . n B 2 3 DT 3 503 503 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AKG 1 400 400 AKG AKG A . D 4 MN 1 300 300 MN MN A . E 5 HOH 1 601 601 HOH HOH A . E 5 HOH 2 602 602 HOH HOH A . E 5 HOH 3 603 603 HOH HOH A . E 5 HOH 4 604 604 HOH HOH A . E 5 HOH 5 605 605 HOH HOH A . E 5 HOH 6 606 606 HOH HOH A . E 5 HOH 7 607 607 HOH HOH A . E 5 HOH 8 608 608 HOH HOH A . E 5 HOH 9 609 609 HOH HOH A . E 5 HOH 10 610 610 HOH HOH A . E 5 HOH 11 611 611 HOH HOH A . E 5 HOH 12 612 612 HOH HOH A . E 5 HOH 13 613 613 HOH HOH A . E 5 HOH 14 614 614 HOH HOH A . E 5 HOH 15 615 615 HOH HOH A . E 5 HOH 16 616 616 HOH HOH A . E 5 HOH 17 617 617 HOH HOH A . E 5 HOH 18 618 618 HOH HOH A . E 5 HOH 19 619 619 HOH HOH A . E 5 HOH 20 620 620 HOH HOH A . E 5 HOH 21 621 621 HOH HOH A . E 5 HOH 22 622 622 HOH HOH A . E 5 HOH 23 623 623 HOH HOH A . E 5 HOH 24 625 625 HOH HOH A . E 5 HOH 25 626 626 HOH HOH A . E 5 HOH 26 627 627 HOH HOH A . E 5 HOH 27 628 628 HOH HOH A . E 5 HOH 28 629 629 HOH HOH A . E 5 HOH 29 630 630 HOH HOH A . E 5 HOH 30 631 631 HOH HOH A . E 5 HOH 31 632 632 HOH HOH A . E 5 HOH 32 633 633 HOH HOH A . E 5 HOH 33 634 634 HOH HOH A . E 5 HOH 34 635 635 HOH HOH A . E 5 HOH 35 636 636 HOH HOH A . E 5 HOH 36 637 637 HOH HOH A . E 5 HOH 37 638 638 HOH HOH A . E 5 HOH 38 639 639 HOH HOH A . E 5 HOH 39 640 640 HOH HOH A . E 5 HOH 40 641 641 HOH HOH A . E 5 HOH 41 642 642 HOH HOH A . E 5 HOH 42 643 643 HOH HOH A . E 5 HOH 43 644 644 HOH HOH A . E 5 HOH 44 645 645 HOH HOH A . E 5 HOH 45 647 647 HOH HOH A . E 5 HOH 46 648 648 HOH HOH A . E 5 HOH 47 649 649 HOH HOH A . E 5 HOH 48 650 650 HOH HOH A . E 5 HOH 49 651 651 HOH HOH A . E 5 HOH 50 652 652 HOH HOH A . E 5 HOH 51 653 653 HOH HOH A . E 5 HOH 52 654 654 HOH HOH A . E 5 HOH 53 655 655 HOH HOH A . E 5 HOH 54 656 656 HOH HOH A . E 5 HOH 55 658 658 HOH HOH A . E 5 HOH 56 659 659 HOH HOH A . E 5 HOH 57 660 660 HOH HOH A . E 5 HOH 58 661 661 HOH HOH A . E 5 HOH 59 662 662 HOH HOH A . E 5 HOH 60 663 663 HOH HOH A . E 5 HOH 61 664 664 HOH HOH A . E 5 HOH 62 665 665 HOH HOH A . E 5 HOH 63 666 666 HOH HOH A . E 5 HOH 64 667 667 HOH HOH A . E 5 HOH 65 668 668 HOH HOH A . E 5 HOH 66 669 669 HOH HOH A . E 5 HOH 67 670 670 HOH HOH A . E 5 HOH 68 671 671 HOH HOH A . E 5 HOH 69 672 672 HOH HOH A . E 5 HOH 70 673 673 HOH HOH A . E 5 HOH 71 674 674 HOH HOH A . E 5 HOH 72 675 675 HOH HOH A . E 5 HOH 73 676 676 HOH HOH A . E 5 HOH 74 677 677 HOH HOH A . E 5 HOH 75 678 678 HOH HOH A . E 5 HOH 76 679 679 HOH HOH A . E 5 HOH 77 680 680 HOH HOH A . E 5 HOH 78 681 681 HOH HOH A . E 5 HOH 79 683 683 HOH HOH A . E 5 HOH 80 684 684 HOH HOH A . E 5 HOH 81 685 685 HOH HOH A . E 5 HOH 82 686 686 HOH HOH A . E 5 HOH 83 687 687 HOH HOH A . E 5 HOH 84 688 688 HOH HOH A . E 5 HOH 85 689 689 HOH HOH A . E 5 HOH 86 690 690 HOH HOH A . E 5 HOH 87 691 691 HOH HOH A . E 5 HOH 88 692 692 HOH HOH A . E 5 HOH 89 693 693 HOH HOH A . E 5 HOH 90 694 694 HOH HOH A . E 5 HOH 91 695 695 HOH HOH A . E 5 HOH 92 696 696 HOH HOH A . E 5 HOH 93 697 697 HOH HOH A . E 5 HOH 94 698 698 HOH HOH A . E 5 HOH 95 699 699 HOH HOH A . E 5 HOH 96 700 700 HOH HOH A . E 5 HOH 97 701 701 HOH HOH A . E 5 HOH 98 702 702 HOH HOH A . E 5 HOH 99 703 703 HOH HOH A . E 5 HOH 100 704 704 HOH HOH A . E 5 HOH 101 705 705 HOH HOH A . E 5 HOH 102 706 706 HOH HOH A . E 5 HOH 103 708 708 HOH HOH A . E 5 HOH 104 709 709 HOH HOH A . E 5 HOH 105 710 710 HOH HOH A . E 5 HOH 106 711 711 HOH HOH A . E 5 HOH 107 712 712 HOH HOH A . E 5 HOH 108 713 713 HOH HOH A . E 5 HOH 109 714 714 HOH HOH A . E 5 HOH 110 716 716 HOH HOH A . E 5 HOH 111 717 717 HOH HOH A . E 5 HOH 112 718 718 HOH HOH A . E 5 HOH 113 719 719 HOH HOH A . E 5 HOH 114 720 720 HOH HOH A . E 5 HOH 115 721 721 HOH HOH A . E 5 HOH 116 722 722 HOH HOH A . E 5 HOH 117 723 723 HOH HOH A . E 5 HOH 118 724 724 HOH HOH A . E 5 HOH 119 725 725 HOH HOH A . E 5 HOH 120 726 726 HOH HOH A . E 5 HOH 121 727 727 HOH HOH A . E 5 HOH 122 728 728 HOH HOH A . E 5 HOH 123 729 729 HOH HOH A . E 5 HOH 124 730 730 HOH HOH A . E 5 HOH 125 731 731 HOH HOH A . E 5 HOH 126 732 732 HOH HOH A . E 5 HOH 127 733 733 HOH HOH A . E 5 HOH 128 734 734 HOH HOH A . E 5 HOH 129 735 735 HOH HOH A . E 5 HOH 130 736 736 HOH HOH A . E 5 HOH 131 738 738 HOH HOH A . E 5 HOH 132 739 739 HOH HOH A . E 5 HOH 133 740 740 HOH HOH A . E 5 HOH 134 741 741 HOH HOH A . E 5 HOH 135 742 742 HOH HOH A . E 5 HOH 136 743 743 HOH HOH A . E 5 HOH 137 744 744 HOH HOH A . E 5 HOH 138 745 745 HOH HOH A . E 5 HOH 139 746 746 HOH HOH A . E 5 HOH 140 747 747 HOH HOH A . E 5 HOH 141 748 748 HOH HOH A . F 5 HOH 1 624 624 HOH HOH B . F 5 HOH 2 646 646 HOH HOH B . F 5 HOH 3 657 657 HOH HOH B . F 5 HOH 4 682 682 HOH HOH B . F 5 HOH 5 707 707 HOH HOH B . F 5 HOH 6 715 715 HOH HOH B . F 5 HOH 7 737 737 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 COMO 1.2 05/01 package 'Lang Tong' tong@como.bio.columbia.edu phasing http://como.bio.columbia.edu/tong/Public/Como/como.html ? ? 4 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-3000 . ? ? ? ? 'data collection' ? ? ? # _cell.length_a 41.444 _cell.length_b 41.444 _cell.length_c 116.709 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3I3M _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43' _symmetry.entry_id 3I3M _symmetry.Int_Tables_number 78 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 3I3M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'PEG 3350, sodium formate, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97947 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_wavelength_list 0.97947 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C # _reflns.entry_id 3I3M _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 50.000 _reflns.number_obs 31383 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_netI_over_sigmaI 17.900 _reflns.pdbx_chi_squared 2.420 _reflns.pdbx_redundancy 3.700 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.50 1.53 ? ? ? 0.438 ? ? 2.729 3.70 ? 1559 99.90 1 1 1.53 1.55 ? ? ? 0.381 ? ? 2.606 3.60 ? 1567 99.90 2 1 1.55 1.58 ? ? ? 0.323 ? ? 2.665 3.70 ? 1573 99.90 3 1 1.58 1.62 ? ? ? 0.307 ? ? 2.777 3.60 ? 1536 100.00 4 1 1.62 1.65 ? ? ? 0.273 ? ? 2.790 3.70 ? 1588 99.90 5 1 1.65 1.69 ? ? ? 0.238 ? ? 2.764 3.70 ? 1551 100.00 6 1 1.69 1.73 ? ? ? 0.212 ? ? 2.753 3.70 ? 1582 99.90 7 1 1.73 1.78 ? ? ? 0.182 ? ? 2.767 3.70 ? 1561 99.90 8 1 1.78 1.83 ? ? ? 0.152 ? ? 2.751 3.70 ? 1563 99.90 9 1 1.83 1.89 ? ? ? 0.126 ? ? 2.616 3.70 ? 1606 99.90 10 1 1.89 1.96 ? ? ? 0.107 ? ? 2.687 3.70 ? 1543 99.70 11 1 1.96 2.04 ? ? ? 0.088 ? ? 2.622 3.70 ? 1552 99.90 12 1 2.04 2.13 ? ? ? 0.074 ? ? 2.515 3.70 ? 1566 99.90 13 1 2.13 2.24 ? ? ? 0.064 ? ? 2.411 3.80 ? 1567 99.90 14 1 2.24 2.38 ? ? ? 0.058 ? ? 2.331 3.80 ? 1574 99.70 15 1 2.38 2.56 ? ? ? 0.051 ? ? 2.186 3.80 ? 1592 99.90 16 1 2.56 2.82 ? ? ? 0.046 ? ? 2.144 3.80 ? 1553 100.00 17 1 2.82 3.23 ? ? ? 0.035 ? ? 1.768 3.80 ? 1585 99.70 18 1 3.23 4.07 ? ? ? 0.028 ? ? 1.382 3.80 ? 1578 99.40 19 1 4.07 50.00 ? ? ? 0.027 ? ? 1.338 3.80 ? 1587 98.30 20 1 # _refine.entry_id 3I3M _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 33.790 _refine.pdbx_ls_sigma_F 1.00 _refine.pdbx_data_cutoff_high_absF 1232268.000 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 95.500 _refine.ls_number_reflns_obs 30051 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.199 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.214 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.200 _refine.ls_number_reflns_R_free 3060 _refine.ls_R_factor_R_free_error 0.004 _refine.B_iso_mean 13.695 _refine.solvent_model_param_bsol 65.434 _refine.solvent_model_param_ksol 0.423 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 0.260 _refine.aniso_B[2][2] 0.260 _refine.aniso_B[3][3] -0.520 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.882 _refine.B_iso_max 71.21 _refine.B_iso_min 4.89 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3I3M _refine_analyze.Luzzati_coordinate_error_obs 0.170 _refine_analyze.Luzzati_sigma_a_obs 0.070 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.190 _refine_analyze.Luzzati_sigma_a_free 0.120 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1564 _refine_hist.pdbx_number_atoms_nucleic_acid 61 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 1784 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 33.790 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.005 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.300 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 24.700 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 0.920 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.110 1.500 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 1.740 2.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 1.860 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 2.620 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.590 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 89.600 _refine_ls_shell.number_reflns_R_work 4229 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.216 _refine_ls_shell.R_factor_R_free 0.251 _refine_ls_shell.percent_reflns_R_free 9.800 _refine_ls_shell.number_reflns_R_free 460 _refine_ls_shell.R_factor_R_free_error 0.012 _refine_ls_shell.number_reflns_all 4689 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param_by water.top 'X-RAY DIFFRACTION' 3 water_rep.param dna-rna.top_by 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 akg.par akg.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3I3M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 3I3M _struct.title 'Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I3M _struct_keywords.text ;beta jellyroll, protein-DNA complex, Dioxygenase, DNA damage, DNA repair, Iron, Metal-binding, Oxidoreductase, OXIDOREDUCTASE-DNA COMPLEX ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB_ECOLI P05050 1 ;QEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA MPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE HGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; 12 ? 2 PDB 3I3M 3I3M 2 TXT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3I3M A 2 ? 206 ? P05050 12 ? 216 ? 12 216 2 2 3I3M B 1 ? 3 ? 3I3M 501 ? 503 ? 501 503 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3I3M MET A 1 ? UNP P05050 ? ? 'initiating methionine' 11 1 1 3I3M ASN A 207 ? UNP P05050 ? ? 'expression tag' 217 2 1 3I3M LEU A 208 ? UNP P05050 ? ? 'expression tag' 218 3 1 3I3M TYR A 209 ? UNP P05050 ? ? 'expression tag' 219 4 1 3I3M PHE A 210 ? UNP P05050 ? ? 'expression tag' 220 5 1 3I3M GLN A 211 ? UNP P05050 ? ? 'expression tag' 221 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1520 ? 1 MORE -4 ? 1 'SSA (A^2)' 9180 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 19 ? SER A 34 ? ALA A 29 SER A 44 1 ? 16 HELX_P HELX_P2 2 PRO A 83 ? GLY A 98 ? PRO A 93 GLY A 108 1 ? 16 HELX_P HELX_P3 3 GLY A 170 ? ARG A 173 ? GLY A 180 ARG A 183 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 1 "O3'" ? ? ? 1_555 B ME6 2 P ? ? B DT 501 B ME6 502 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale both ? B ME6 2 "O3'" ? ? ? 1_555 B DT 3 P ? ? B ME6 502 B DT 503 1_555 ? ? ? ? ? ? ? 1.611 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 9 ? LEU A 12 ? ALA A 19 LEU A 22 A 2 VAL A 165 ? TRP A 168 ? VAL A 175 TRP A 178 A 3 ILE A 133 ? GLY A 139 ? ILE A 143 GLY A 149 A 4 ARG A 194 ? ARG A 200 ? ARG A 204 ARG A 210 A 5 ALA A 106 ? TYR A 112 ? ALA A 116 TYR A 122 A 6 ALA A 50 ? CYS A 54 ? ALA A 60 CYS A 64 B 1 GLY A 58 ? THR A 60 ? GLY A 68 THR A 70 B 2 LEU A 67 ? SER A 69 ? LEU A 77 SER A 79 C 1 LEU A 118 ? HIS A 121 ? LEU A 128 HIS A 131 C 2 HIS A 177 ? ILE A 179 ? HIS A 187 ILE A 189 C 3 ALA A 142 ? PHE A 146 ? ALA A 152 PHE A 156 C 4 LYS A 156 ? LEU A 160 ? LYS A 166 LEU A 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 12 ? N LEU A 22 O VAL A 165 ? O VAL A 175 A 2 3 O VAL A 166 ? O VAL A 176 N SER A 135 ? N SER A 145 A 3 4 N VAL A 134 ? N VAL A 144 O PHE A 199 ? O PHE A 209 A 4 5 O ARG A 194 ? O ARG A 204 N TYR A 112 ? N TYR A 122 A 5 6 O ILE A 109 ? O ILE A 119 N THR A 52 ? N THR A 62 B 1 2 N THR A 60 ? N THR A 70 O LEU A 67 ? O LEU A 77 C 1 2 N HIS A 121 ? N HIS A 131 O HIS A 177 ? O HIS A 187 C 2 3 O GLY A 178 ? O GLY A 188 N GLN A 145 ? N GLN A 155 C 3 4 N PHE A 144 ? N PHE A 154 O LEU A 158 ? O LEU A 168 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AKG 400 ? 16 'BINDING SITE FOR RESIDUE AKG A 400' AC2 Software A MN 300 ? 5 'BINDING SITE FOR RESIDUE MN A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 LEU A 108 ? LEU A 118 . ? 1_555 ? 2 AC1 16 ASN A 110 ? ASN A 120 . ? 1_555 ? 3 AC1 16 TYR A 112 ? TYR A 122 . ? 1_555 ? 4 AC1 16 LEU A 118 ? LEU A 128 . ? 1_555 ? 5 AC1 16 HIS A 121 ? HIS A 131 . ? 1_555 ? 6 AC1 16 ASP A 123 ? ASP A 133 . ? 1_555 ? 7 AC1 16 HIS A 177 ? HIS A 187 . ? 1_555 ? 8 AC1 16 ILE A 179 ? ILE A 189 . ? 1_555 ? 9 AC1 16 ARG A 194 ? ARG A 204 . ? 1_555 ? 10 AC1 16 ASN A 196 ? ASN A 206 . ? 1_555 ? 11 AC1 16 THR A 198 ? THR A 208 . ? 1_555 ? 12 AC1 16 ARG A 200 ? ARG A 210 . ? 1_555 ? 13 AC1 16 MN D . ? MN A 300 . ? 1_555 ? 14 AC1 16 HOH E . ? HOH A 601 . ? 1_555 ? 15 AC1 16 HOH E . ? HOH A 620 . ? 1_555 ? 16 AC1 16 ME6 B 2 ? ME6 B 502 . ? 1_555 ? 17 AC2 5 HIS A 121 ? HIS A 131 . ? 1_555 ? 18 AC2 5 ASP A 123 ? ASP A 133 . ? 1_555 ? 19 AC2 5 HIS A 177 ? HIS A 187 . ? 1_555 ? 20 AC2 5 AKG C . ? AKG A 400 . ? 1_555 ? 21 AC2 5 HOH E . ? HOH A 601 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 501 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 501 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.523 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.084 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 201 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 67.05 _pdbx_validate_torsion.psi -82.99 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ME6 _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id ME6 _pdbx_struct_mod_residue.auth_seq_id 502 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # _pdbx_phasing_MR.entry_id 3I3M _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 42.600 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 40.820 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 4.000 _pdbx_phasing_MR.d_res_low_rotation 10.000 _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 11 ? A MET 1 2 1 Y 1 A GLN 12 ? A GLN 2 3 1 Y 1 A GLU 13 ? A GLU 3 4 1 Y 1 A PRO 14 ? A PRO 4 5 1 Y 1 A LYS 215 ? A LYS 205 6 1 Y 1 A GLU 216 ? A GLU 206 7 1 Y 1 A ASN 217 ? A ASN 207 8 1 Y 1 A LEU 218 ? A LEU 208 9 1 Y 1 A TYR 219 ? A TYR 209 10 1 Y 1 A PHE 220 ? A PHE 210 11 1 Y 1 A GLN 221 ? A GLN 211 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AKG C1 C N N 1 AKG O1 O N N 2 AKG O2 O N N 3 AKG C2 C N N 4 AKG O5 O N N 5 AKG C3 C N N 6 AKG C4 C N N 7 AKG C5 C N N 8 AKG O3 O N N 9 AKG O4 O N N 10 AKG HO2 H N N 11 AKG H31 H N N 12 AKG H32 H N N 13 AKG H41 H N N 14 AKG H42 H N N 15 AKG HO4 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 ARG N N N N 30 ARG CA C N S 31 ARG C C N N 32 ARG O O N N 33 ARG CB C N N 34 ARG CG C N N 35 ARG CD C N N 36 ARG NE N N N 37 ARG CZ C N N 38 ARG NH1 N N N 39 ARG NH2 N N N 40 ARG OXT O N N 41 ARG H H N N 42 ARG H2 H N N 43 ARG HA H N N 44 ARG HB2 H N N 45 ARG HB3 H N N 46 ARG HG2 H N N 47 ARG HG3 H N N 48 ARG HD2 H N N 49 ARG HD3 H N N 50 ARG HE H N N 51 ARG HH11 H N N 52 ARG HH12 H N N 53 ARG HH21 H N N 54 ARG HH22 H N N 55 ARG HXT H N N 56 ASN N N N N 57 ASN CA C N S 58 ASN C C N N 59 ASN O O N N 60 ASN CB C N N 61 ASN CG C N N 62 ASN OD1 O N N 63 ASN ND2 N N N 64 ASN OXT O N N 65 ASN H H N N 66 ASN H2 H N N 67 ASN HA H N N 68 ASN HB2 H N N 69 ASN HB3 H N N 70 ASN HD21 H N N 71 ASN HD22 H N N 72 ASN HXT H N N 73 ASP N N N N 74 ASP CA C N S 75 ASP C C N N 76 ASP O O N N 77 ASP CB C N N 78 ASP CG C N N 79 ASP OD1 O N N 80 ASP OD2 O N N 81 ASP OXT O N N 82 ASP H H N N 83 ASP H2 H N N 84 ASP HA H N N 85 ASP HB2 H N N 86 ASP HB3 H N N 87 ASP HD2 H N N 88 ASP HXT H N N 89 CYS N N N N 90 CYS CA C N R 91 CYS C C N N 92 CYS O O N N 93 CYS CB C N N 94 CYS SG S N N 95 CYS OXT O N N 96 CYS H H N N 97 CYS H2 H N N 98 CYS HA H N N 99 CYS HB2 H N N 100 CYS HB3 H N N 101 CYS HG H N N 102 CYS HXT H N N 103 DT OP3 O N N 104 DT P P N N 105 DT OP1 O N N 106 DT OP2 O N N 107 DT "O5'" O N N 108 DT "C5'" C N N 109 DT "C4'" C N R 110 DT "O4'" O N N 111 DT "C3'" C N S 112 DT "O3'" O N N 113 DT "C2'" C N N 114 DT "C1'" C N R 115 DT N1 N N N 116 DT C2 C N N 117 DT O2 O N N 118 DT N3 N N N 119 DT C4 C N N 120 DT O4 O N N 121 DT C5 C N N 122 DT C7 C N N 123 DT C6 C N N 124 DT HOP3 H N N 125 DT HOP2 H N N 126 DT "H5'" H N N 127 DT "H5''" H N N 128 DT "H4'" H N N 129 DT "H3'" H N N 130 DT "HO3'" H N N 131 DT "H2'" H N N 132 DT "H2''" H N N 133 DT "H1'" H N N 134 DT H3 H N N 135 DT H71 H N N 136 DT H72 H N N 137 DT H73 H N N 138 DT H6 H N N 139 GLN N N N N 140 GLN CA C N S 141 GLN C C N N 142 GLN O O N N 143 GLN CB C N N 144 GLN CG C N N 145 GLN CD C N N 146 GLN OE1 O N N 147 GLN NE2 N N N 148 GLN OXT O N N 149 GLN H H N N 150 GLN H2 H N N 151 GLN HA H N N 152 GLN HB2 H N N 153 GLN HB3 H N N 154 GLN HG2 H N N 155 GLN HG3 H N N 156 GLN HE21 H N N 157 GLN HE22 H N N 158 GLN HXT H N N 159 GLU N N N N 160 GLU CA C N S 161 GLU C C N N 162 GLU O O N N 163 GLU CB C N N 164 GLU CG C N N 165 GLU CD C N N 166 GLU OE1 O N N 167 GLU OE2 O N N 168 GLU OXT O N N 169 GLU H H N N 170 GLU H2 H N N 171 GLU HA H N N 172 GLU HB2 H N N 173 GLU HB3 H N N 174 GLU HG2 H N N 175 GLU HG3 H N N 176 GLU HE2 H N N 177 GLU HXT H N N 178 GLY N N N N 179 GLY CA C N N 180 GLY C C N N 181 GLY O O N N 182 GLY OXT O N N 183 GLY H H N N 184 GLY H2 H N N 185 GLY HA2 H N N 186 GLY HA3 H N N 187 GLY HXT H N N 188 HIS N N N N 189 HIS CA C N S 190 HIS C C N N 191 HIS O O N N 192 HIS CB C N N 193 HIS CG C Y N 194 HIS ND1 N Y N 195 HIS CD2 C Y N 196 HIS CE1 C Y N 197 HIS NE2 N Y N 198 HIS OXT O N N 199 HIS H H N N 200 HIS H2 H N N 201 HIS HA H N N 202 HIS HB2 H N N 203 HIS HB3 H N N 204 HIS HD1 H N N 205 HIS HD2 H N N 206 HIS HE1 H N N 207 HIS HE2 H N N 208 HIS HXT H N N 209 HOH O O N N 210 HOH H1 H N N 211 HOH H2 H N N 212 ILE N N N N 213 ILE CA C N S 214 ILE C C N N 215 ILE O O N N 216 ILE CB C N S 217 ILE CG1 C N N 218 ILE CG2 C N N 219 ILE CD1 C N N 220 ILE OXT O N N 221 ILE H H N N 222 ILE H2 H N N 223 ILE HA H N N 224 ILE HB H N N 225 ILE HG12 H N N 226 ILE HG13 H N N 227 ILE HG21 H N N 228 ILE HG22 H N N 229 ILE HG23 H N N 230 ILE HD11 H N N 231 ILE HD12 H N N 232 ILE HD13 H N N 233 ILE HXT H N N 234 LEU N N N N 235 LEU CA C N S 236 LEU C C N N 237 LEU O O N N 238 LEU CB C N N 239 LEU CG C N N 240 LEU CD1 C N N 241 LEU CD2 C N N 242 LEU OXT O N N 243 LEU H H N N 244 LEU H2 H N N 245 LEU HA H N N 246 LEU HB2 H N N 247 LEU HB3 H N N 248 LEU HG H N N 249 LEU HD11 H N N 250 LEU HD12 H N N 251 LEU HD13 H N N 252 LEU HD21 H N N 253 LEU HD22 H N N 254 LEU HD23 H N N 255 LEU HXT H N N 256 LYS N N N N 257 LYS CA C N S 258 LYS C C N N 259 LYS O O N N 260 LYS CB C N N 261 LYS CG C N N 262 LYS CD C N N 263 LYS CE C N N 264 LYS NZ N N N 265 LYS OXT O N N 266 LYS H H N N 267 LYS H2 H N N 268 LYS HA H N N 269 LYS HB2 H N N 270 LYS HB3 H N N 271 LYS HG2 H N N 272 LYS HG3 H N N 273 LYS HD2 H N N 274 LYS HD3 H N N 275 LYS HE2 H N N 276 LYS HE3 H N N 277 LYS HZ1 H N N 278 LYS HZ2 H N N 279 LYS HZ3 H N N 280 LYS HXT H N N 281 ME6 O2 O N N 282 ME6 C2 C N N 283 ME6 N3 N N N 284 ME6 C20 C N N 285 ME6 C4 C N N 286 ME6 N4 N N N 287 ME6 C5 C N N 288 ME6 C6 C N N 289 ME6 N1 N N N 290 ME6 "C1'" C N R 291 ME6 "O4'" O N N 292 ME6 "C2'" C N N 293 ME6 "C3'" C N S 294 ME6 "O3'" O N N 295 ME6 "C4'" C N R 296 ME6 "C5'" C N N 297 ME6 "O5'" O N N 298 ME6 P P N N 299 ME6 O3P O N N 300 ME6 O2P O N N 301 ME6 H20 H N N 302 ME6 H20A H N N 303 ME6 H20B H N N 304 ME6 HN4 H N N 305 ME6 H5 H N N 306 ME6 H6 H N N 307 ME6 "H1'" H N N 308 ME6 "H2'" H N N 309 ME6 "H2'A" H N N 310 ME6 "H3'" H N N 311 ME6 "HO3'" H N N 312 ME6 "H4'" H N N 313 ME6 "H5'" H N N 314 ME6 "H5'A" H N N 315 ME6 HO3P H N N 316 ME6 HO2P H N N 317 ME6 O1P O N N 318 ME6 H17 H N N 319 MET N N N N 320 MET CA C N S 321 MET C C N N 322 MET O O N N 323 MET CB C N N 324 MET CG C N N 325 MET SD S N N 326 MET CE C N N 327 MET OXT O N N 328 MET H H N N 329 MET H2 H N N 330 MET HA H N N 331 MET HB2 H N N 332 MET HB3 H N N 333 MET HG2 H N N 334 MET HG3 H N N 335 MET HE1 H N N 336 MET HE2 H N N 337 MET HE3 H N N 338 MET HXT H N N 339 MN MN MN N N 340 PHE N N N N 341 PHE CA C N S 342 PHE C C N N 343 PHE O O N N 344 PHE CB C N N 345 PHE CG C Y N 346 PHE CD1 C Y N 347 PHE CD2 C Y N 348 PHE CE1 C Y N 349 PHE CE2 C Y N 350 PHE CZ C Y N 351 PHE OXT O N N 352 PHE H H N N 353 PHE H2 H N N 354 PHE HA H N N 355 PHE HB2 H N N 356 PHE HB3 H N N 357 PHE HD1 H N N 358 PHE HD2 H N N 359 PHE HE1 H N N 360 PHE HE2 H N N 361 PHE HZ H N N 362 PHE HXT H N N 363 PRO N N N N 364 PRO CA C N S 365 PRO C C N N 366 PRO O O N N 367 PRO CB C N N 368 PRO CG C N N 369 PRO CD C N N 370 PRO OXT O N N 371 PRO H H N N 372 PRO HA H N N 373 PRO HB2 H N N 374 PRO HB3 H N N 375 PRO HG2 H N N 376 PRO HG3 H N N 377 PRO HD2 H N N 378 PRO HD3 H N N 379 PRO HXT H N N 380 SER N N N N 381 SER CA C N S 382 SER C C N N 383 SER O O N N 384 SER CB C N N 385 SER OG O N N 386 SER OXT O N N 387 SER H H N N 388 SER H2 H N N 389 SER HA H N N 390 SER HB2 H N N 391 SER HB3 H N N 392 SER HG H N N 393 SER HXT H N N 394 THR N N N N 395 THR CA C N S 396 THR C C N N 397 THR O O N N 398 THR CB C N R 399 THR OG1 O N N 400 THR CG2 C N N 401 THR OXT O N N 402 THR H H N N 403 THR H2 H N N 404 THR HA H N N 405 THR HB H N N 406 THR HG1 H N N 407 THR HG21 H N N 408 THR HG22 H N N 409 THR HG23 H N N 410 THR HXT H N N 411 TRP N N N N 412 TRP CA C N S 413 TRP C C N N 414 TRP O O N N 415 TRP CB C N N 416 TRP CG C Y N 417 TRP CD1 C Y N 418 TRP CD2 C Y N 419 TRP NE1 N Y N 420 TRP CE2 C Y N 421 TRP CE3 C Y N 422 TRP CZ2 C Y N 423 TRP CZ3 C Y N 424 TRP CH2 C Y N 425 TRP OXT O N N 426 TRP H H N N 427 TRP H2 H N N 428 TRP HA H N N 429 TRP HB2 H N N 430 TRP HB3 H N N 431 TRP HD1 H N N 432 TRP HE1 H N N 433 TRP HE3 H N N 434 TRP HZ2 H N N 435 TRP HZ3 H N N 436 TRP HH2 H N N 437 TRP HXT H N N 438 TYR N N N N 439 TYR CA C N S 440 TYR C C N N 441 TYR O O N N 442 TYR CB C N N 443 TYR CG C Y N 444 TYR CD1 C Y N 445 TYR CD2 C Y N 446 TYR CE1 C Y N 447 TYR CE2 C Y N 448 TYR CZ C Y N 449 TYR OH O N N 450 TYR OXT O N N 451 TYR H H N N 452 TYR H2 H N N 453 TYR HA H N N 454 TYR HB2 H N N 455 TYR HB3 H N N 456 TYR HD1 H N N 457 TYR HD2 H N N 458 TYR HE1 H N N 459 TYR HE2 H N N 460 TYR HH H N N 461 TYR HXT H N N 462 VAL N N N N 463 VAL CA C N S 464 VAL C C N N 465 VAL O O N N 466 VAL CB C N N 467 VAL CG1 C N N 468 VAL CG2 C N N 469 VAL OXT O N N 470 VAL H H N N 471 VAL H2 H N N 472 VAL HA H N N 473 VAL HB H N N 474 VAL HG11 H N N 475 VAL HG12 H N N 476 VAL HG13 H N N 477 VAL HG21 H N N 478 VAL HG22 H N N 479 VAL HG23 H N N 480 VAL HXT H N N 481 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AKG C1 O1 doub N N 1 AKG C1 O2 sing N N 2 AKG C1 C2 sing N N 3 AKG O2 HO2 sing N N 4 AKG C2 O5 doub N N 5 AKG C2 C3 sing N N 6 AKG C3 C4 sing N N 7 AKG C3 H31 sing N N 8 AKG C3 H32 sing N N 9 AKG C4 C5 sing N N 10 AKG C4 H41 sing N N 11 AKG C4 H42 sing N N 12 AKG C5 O3 doub N N 13 AKG C5 O4 sing N N 14 AKG O4 HO4 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 ARG N CA sing N N 28 ARG N H sing N N 29 ARG N H2 sing N N 30 ARG CA C sing N N 31 ARG CA CB sing N N 32 ARG CA HA sing N N 33 ARG C O doub N N 34 ARG C OXT sing N N 35 ARG CB CG sing N N 36 ARG CB HB2 sing N N 37 ARG CB HB3 sing N N 38 ARG CG CD sing N N 39 ARG CG HG2 sing N N 40 ARG CG HG3 sing N N 41 ARG CD NE sing N N 42 ARG CD HD2 sing N N 43 ARG CD HD3 sing N N 44 ARG NE CZ sing N N 45 ARG NE HE sing N N 46 ARG CZ NH1 sing N N 47 ARG CZ NH2 doub N N 48 ARG NH1 HH11 sing N N 49 ARG NH1 HH12 sing N N 50 ARG NH2 HH21 sing N N 51 ARG NH2 HH22 sing N N 52 ARG OXT HXT sing N N 53 ASN N CA sing N N 54 ASN N H sing N N 55 ASN N H2 sing N N 56 ASN CA C sing N N 57 ASN CA CB sing N N 58 ASN CA HA sing N N 59 ASN C O doub N N 60 ASN C OXT sing N N 61 ASN CB CG sing N N 62 ASN CB HB2 sing N N 63 ASN CB HB3 sing N N 64 ASN CG OD1 doub N N 65 ASN CG ND2 sing N N 66 ASN ND2 HD21 sing N N 67 ASN ND2 HD22 sing N N 68 ASN OXT HXT sing N N 69 ASP N CA sing N N 70 ASP N H sing N N 71 ASP N H2 sing N N 72 ASP CA C sing N N 73 ASP CA CB sing N N 74 ASP CA HA sing N N 75 ASP C O doub N N 76 ASP C OXT sing N N 77 ASP CB CG sing N N 78 ASP CB HB2 sing N N 79 ASP CB HB3 sing N N 80 ASP CG OD1 doub N N 81 ASP CG OD2 sing N N 82 ASP OD2 HD2 sing N N 83 ASP OXT HXT sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 DT OP3 P sing N N 98 DT OP3 HOP3 sing N N 99 DT P OP1 doub N N 100 DT P OP2 sing N N 101 DT P "O5'" sing N N 102 DT OP2 HOP2 sing N N 103 DT "O5'" "C5'" sing N N 104 DT "C5'" "C4'" sing N N 105 DT "C5'" "H5'" sing N N 106 DT "C5'" "H5''" sing N N 107 DT "C4'" "O4'" sing N N 108 DT "C4'" "C3'" sing N N 109 DT "C4'" "H4'" sing N N 110 DT "O4'" "C1'" sing N N 111 DT "C3'" "O3'" sing N N 112 DT "C3'" "C2'" sing N N 113 DT "C3'" "H3'" sing N N 114 DT "O3'" "HO3'" sing N N 115 DT "C2'" "C1'" sing N N 116 DT "C2'" "H2'" sing N N 117 DT "C2'" "H2''" sing N N 118 DT "C1'" N1 sing N N 119 DT "C1'" "H1'" sing N N 120 DT N1 C2 sing N N 121 DT N1 C6 sing N N 122 DT C2 O2 doub N N 123 DT C2 N3 sing N N 124 DT N3 C4 sing N N 125 DT N3 H3 sing N N 126 DT C4 O4 doub N N 127 DT C4 C5 sing N N 128 DT C5 C7 sing N N 129 DT C5 C6 doub N N 130 DT C7 H71 sing N N 131 DT C7 H72 sing N N 132 DT C7 H73 sing N N 133 DT C6 H6 sing N N 134 GLN N CA sing N N 135 GLN N H sing N N 136 GLN N H2 sing N N 137 GLN CA C sing N N 138 GLN CA CB sing N N 139 GLN CA HA sing N N 140 GLN C O doub N N 141 GLN C OXT sing N N 142 GLN CB CG sing N N 143 GLN CB HB2 sing N N 144 GLN CB HB3 sing N N 145 GLN CG CD sing N N 146 GLN CG HG2 sing N N 147 GLN CG HG3 sing N N 148 GLN CD OE1 doub N N 149 GLN CD NE2 sing N N 150 GLN NE2 HE21 sing N N 151 GLN NE2 HE22 sing N N 152 GLN OXT HXT sing N N 153 GLU N CA sing N N 154 GLU N H sing N N 155 GLU N H2 sing N N 156 GLU CA C sing N N 157 GLU CA CB sing N N 158 GLU CA HA sing N N 159 GLU C O doub N N 160 GLU C OXT sing N N 161 GLU CB CG sing N N 162 GLU CB HB2 sing N N 163 GLU CB HB3 sing N N 164 GLU CG CD sing N N 165 GLU CG HG2 sing N N 166 GLU CG HG3 sing N N 167 GLU CD OE1 doub N N 168 GLU CD OE2 sing N N 169 GLU OE2 HE2 sing N N 170 GLU OXT HXT sing N N 171 GLY N CA sing N N 172 GLY N H sing N N 173 GLY N H2 sing N N 174 GLY CA C sing N N 175 GLY CA HA2 sing N N 176 GLY CA HA3 sing N N 177 GLY C O doub N N 178 GLY C OXT sing N N 179 GLY OXT HXT sing N N 180 HIS N CA sing N N 181 HIS N H sing N N 182 HIS N H2 sing N N 183 HIS CA C sing N N 184 HIS CA CB sing N N 185 HIS CA HA sing N N 186 HIS C O doub N N 187 HIS C OXT sing N N 188 HIS CB CG sing N N 189 HIS CB HB2 sing N N 190 HIS CB HB3 sing N N 191 HIS CG ND1 sing Y N 192 HIS CG CD2 doub Y N 193 HIS ND1 CE1 doub Y N 194 HIS ND1 HD1 sing N N 195 HIS CD2 NE2 sing Y N 196 HIS CD2 HD2 sing N N 197 HIS CE1 NE2 sing Y N 198 HIS CE1 HE1 sing N N 199 HIS NE2 HE2 sing N N 200 HIS OXT HXT sing N N 201 HOH O H1 sing N N 202 HOH O H2 sing N N 203 ILE N CA sing N N 204 ILE N H sing N N 205 ILE N H2 sing N N 206 ILE CA C sing N N 207 ILE CA CB sing N N 208 ILE CA HA sing N N 209 ILE C O doub N N 210 ILE C OXT sing N N 211 ILE CB CG1 sing N N 212 ILE CB CG2 sing N N 213 ILE CB HB sing N N 214 ILE CG1 CD1 sing N N 215 ILE CG1 HG12 sing N N 216 ILE CG1 HG13 sing N N 217 ILE CG2 HG21 sing N N 218 ILE CG2 HG22 sing N N 219 ILE CG2 HG23 sing N N 220 ILE CD1 HD11 sing N N 221 ILE CD1 HD12 sing N N 222 ILE CD1 HD13 sing N N 223 ILE OXT HXT sing N N 224 LEU N CA sing N N 225 LEU N H sing N N 226 LEU N H2 sing N N 227 LEU CA C sing N N 228 LEU CA CB sing N N 229 LEU CA HA sing N N 230 LEU C O doub N N 231 LEU C OXT sing N N 232 LEU CB CG sing N N 233 LEU CB HB2 sing N N 234 LEU CB HB3 sing N N 235 LEU CG CD1 sing N N 236 LEU CG CD2 sing N N 237 LEU CG HG sing N N 238 LEU CD1 HD11 sing N N 239 LEU CD1 HD12 sing N N 240 LEU CD1 HD13 sing N N 241 LEU CD2 HD21 sing N N 242 LEU CD2 HD22 sing N N 243 LEU CD2 HD23 sing N N 244 LEU OXT HXT sing N N 245 LYS N CA sing N N 246 LYS N H sing N N 247 LYS N H2 sing N N 248 LYS CA C sing N N 249 LYS CA CB sing N N 250 LYS CA HA sing N N 251 LYS C O doub N N 252 LYS C OXT sing N N 253 LYS CB CG sing N N 254 LYS CB HB2 sing N N 255 LYS CB HB3 sing N N 256 LYS CG CD sing N N 257 LYS CG HG2 sing N N 258 LYS CG HG3 sing N N 259 LYS CD CE sing N N 260 LYS CD HD2 sing N N 261 LYS CD HD3 sing N N 262 LYS CE NZ sing N N 263 LYS CE HE2 sing N N 264 LYS CE HE3 sing N N 265 LYS NZ HZ1 sing N N 266 LYS NZ HZ2 sing N N 267 LYS NZ HZ3 sing N N 268 LYS OXT HXT sing N N 269 ME6 O2 C2 doub N N 270 ME6 C2 N1 sing N N 271 ME6 C2 N3 sing N N 272 ME6 N3 C4 doub N N 273 ME6 C20 N3 sing N N 274 ME6 C20 H20 sing N N 275 ME6 C20 H20A sing N N 276 ME6 C20 H20B sing N N 277 ME6 C4 N4 sing N N 278 ME6 C4 C5 sing N N 279 ME6 N4 HN4 sing N N 280 ME6 C5 H5 sing N N 281 ME6 C6 C5 doub N N 282 ME6 C6 H6 sing N N 283 ME6 N1 C6 sing N N 284 ME6 "C1'" N1 sing N N 285 ME6 "C1'" "H1'" sing N N 286 ME6 "O4'" "C1'" sing N N 287 ME6 "C2'" "C1'" sing N N 288 ME6 "C2'" "H2'" sing N N 289 ME6 "C2'" "H2'A" sing N N 290 ME6 "C3'" "C2'" sing N N 291 ME6 "C3'" "O3'" sing N N 292 ME6 "C3'" "H3'" sing N N 293 ME6 "O3'" "HO3'" sing N N 294 ME6 "C4'" "O4'" sing N N 295 ME6 "C4'" "C3'" sing N N 296 ME6 "C4'" "H4'" sing N N 297 ME6 "C5'" "C4'" sing N N 298 ME6 "C5'" "H5'" sing N N 299 ME6 "C5'" "H5'A" sing N N 300 ME6 "O5'" "C5'" sing N N 301 ME6 P "O5'" sing N N 302 ME6 P O3P sing N N 303 ME6 P O1P doub N N 304 ME6 O3P HO3P sing N N 305 ME6 O2P P sing N N 306 ME6 O2P HO2P sing N N 307 ME6 N4 H17 sing N N 308 MET N CA sing N N 309 MET N H sing N N 310 MET N H2 sing N N 311 MET CA C sing N N 312 MET CA CB sing N N 313 MET CA HA sing N N 314 MET C O doub N N 315 MET C OXT sing N N 316 MET CB CG sing N N 317 MET CB HB2 sing N N 318 MET CB HB3 sing N N 319 MET CG SD sing N N 320 MET CG HG2 sing N N 321 MET CG HG3 sing N N 322 MET SD CE sing N N 323 MET CE HE1 sing N N 324 MET CE HE2 sing N N 325 MET CE HE3 sing N N 326 MET OXT HXT sing N N 327 PHE N CA sing N N 328 PHE N H sing N N 329 PHE N H2 sing N N 330 PHE CA C sing N N 331 PHE CA CB sing N N 332 PHE CA HA sing N N 333 PHE C O doub N N 334 PHE C OXT sing N N 335 PHE CB CG sing N N 336 PHE CB HB2 sing N N 337 PHE CB HB3 sing N N 338 PHE CG CD1 doub Y N 339 PHE CG CD2 sing Y N 340 PHE CD1 CE1 sing Y N 341 PHE CD1 HD1 sing N N 342 PHE CD2 CE2 doub Y N 343 PHE CD2 HD2 sing N N 344 PHE CE1 CZ doub Y N 345 PHE CE1 HE1 sing N N 346 PHE CE2 CZ sing Y N 347 PHE CE2 HE2 sing N N 348 PHE CZ HZ sing N N 349 PHE OXT HXT sing N N 350 PRO N CA sing N N 351 PRO N CD sing N N 352 PRO N H sing N N 353 PRO CA C sing N N 354 PRO CA CB sing N N 355 PRO CA HA sing N N 356 PRO C O doub N N 357 PRO C OXT sing N N 358 PRO CB CG sing N N 359 PRO CB HB2 sing N N 360 PRO CB HB3 sing N N 361 PRO CG CD sing N N 362 PRO CG HG2 sing N N 363 PRO CG HG3 sing N N 364 PRO CD HD2 sing N N 365 PRO CD HD3 sing N N 366 PRO OXT HXT sing N N 367 SER N CA sing N N 368 SER N H sing N N 369 SER N H2 sing N N 370 SER CA C sing N N 371 SER CA CB sing N N 372 SER CA HA sing N N 373 SER C O doub N N 374 SER C OXT sing N N 375 SER CB OG sing N N 376 SER CB HB2 sing N N 377 SER CB HB3 sing N N 378 SER OG HG sing N N 379 SER OXT HXT sing N N 380 THR N CA sing N N 381 THR N H sing N N 382 THR N H2 sing N N 383 THR CA C sing N N 384 THR CA CB sing N N 385 THR CA HA sing N N 386 THR C O doub N N 387 THR C OXT sing N N 388 THR CB OG1 sing N N 389 THR CB CG2 sing N N 390 THR CB HB sing N N 391 THR OG1 HG1 sing N N 392 THR CG2 HG21 sing N N 393 THR CG2 HG22 sing N N 394 THR CG2 HG23 sing N N 395 THR OXT HXT sing N N 396 TRP N CA sing N N 397 TRP N H sing N N 398 TRP N H2 sing N N 399 TRP CA C sing N N 400 TRP CA CB sing N N 401 TRP CA HA sing N N 402 TRP C O doub N N 403 TRP C OXT sing N N 404 TRP CB CG sing N N 405 TRP CB HB2 sing N N 406 TRP CB HB3 sing N N 407 TRP CG CD1 doub Y N 408 TRP CG CD2 sing Y N 409 TRP CD1 NE1 sing Y N 410 TRP CD1 HD1 sing N N 411 TRP CD2 CE2 doub Y N 412 TRP CD2 CE3 sing Y N 413 TRP NE1 CE2 sing Y N 414 TRP NE1 HE1 sing N N 415 TRP CE2 CZ2 sing Y N 416 TRP CE3 CZ3 doub Y N 417 TRP CE3 HE3 sing N N 418 TRP CZ2 CH2 doub Y N 419 TRP CZ2 HZ2 sing N N 420 TRP CZ3 CH2 sing Y N 421 TRP CZ3 HZ3 sing N N 422 TRP CH2 HH2 sing N N 423 TRP OXT HXT sing N N 424 TYR N CA sing N N 425 TYR N H sing N N 426 TYR N H2 sing N N 427 TYR CA C sing N N 428 TYR CA CB sing N N 429 TYR CA HA sing N N 430 TYR C O doub N N 431 TYR C OXT sing N N 432 TYR CB CG sing N N 433 TYR CB HB2 sing N N 434 TYR CB HB3 sing N N 435 TYR CG CD1 doub Y N 436 TYR CG CD2 sing Y N 437 TYR CD1 CE1 sing Y N 438 TYR CD1 HD1 sing N N 439 TYR CD2 CE2 doub Y N 440 TYR CD2 HD2 sing N N 441 TYR CE1 CZ doub Y N 442 TYR CE1 HE1 sing N N 443 TYR CE2 CZ sing Y N 444 TYR CE2 HE2 sing N N 445 TYR CZ OH sing N N 446 TYR OH HH sing N N 447 TYR OXT HXT sing N N 448 VAL N CA sing N N 449 VAL N H sing N N 450 VAL N H2 sing N N 451 VAL CA C sing N N 452 VAL CA CB sing N N 453 VAL CA HA sing N N 454 VAL C O doub N N 455 VAL C OXT sing N N 456 VAL CB CG1 sing N N 457 VAL CB CG2 sing N N 458 VAL CB HB sing N N 459 VAL CG1 HG11 sing N N 460 VAL CG1 HG12 sing N N 461 VAL CG1 HG13 sing N N 462 VAL CG2 HG21 sing N N 463 VAL CG2 HG22 sing N N 464 VAL CG2 HG23 sing N N 465 VAL OXT HXT sing N N 466 # _atom_sites.entry_id 3I3M _atom_sites.fract_transf_matrix[1][1] 0.024129 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024129 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008568 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MN N O P S # loop_