HEADER TRANSFERASE 01-JUL-09 3I4B TITLE CRYSTAL STRUCTURE OF GSK3B IN COMPLEX WITH A PYRIMIDYLPYRROLE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GSK-3 BETA; COMPND 5 EC: 2.7.11.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSK3B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH-5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE, GSK3B, ERK, PYRIMIDYL PYRROLE, ALTERNATIVE SPLICING, ATP- KEYWDS 2 BINDING, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, SERINE/THREONINE- KEYWDS 3 PROTEIN KINASE, TRANSFERASE, WNT SIGNALING PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR E.TER HAAR REVDAT 5 03-APR-24 3I4B 1 REMARK REVDAT 4 21-FEB-24 3I4B 1 REMARK REVDAT 3 04-APR-18 3I4B 1 REMARK REVDAT 2 01-NOV-17 3I4B 1 REMARK REVDAT 1 12-JAN-10 3I4B 0 JRNL AUTH A.M.ARONOV,Q.TANG,G.MARTINEZ-BOTELLA,G.W.BEMIS,J.CAO,G.CHEN, JRNL AUTH 2 N.P.EWING,P.J.FORD,U.A.GERMANN,J.GREEN,M.R.HALE,M.JACOBS, JRNL AUTH 3 J.W.JANETKA,F.MALTAIS,W.MARKLAND,M.N.NAMCHUK,S.NANTHAKUMAR, JRNL AUTH 4 S.POONDRU,J.STRAUB,E.TER HAAR,X.XIE JRNL TITL STRUCTURE-GUIDED DESIGN OF POTENT AND SELECTIVE JRNL TITL 2 PYRIMIDYLPYRROLE INHIBITORS OF EXTRACELLULAR JRNL TITL 3 SIGNAL-REGULATED KINASE (ERK) USING CONFORMATIONAL CONTROL. JRNL REF J.MED.CHEM. V. 52 6362 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19827834 JRNL DOI 10.1021/JM900630Q REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT V. 1.3.1 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 54328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2635 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6548 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2340 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6216 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 332 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 735 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.34000 REMARK 3 B22 (A**2) : -6.29100 REMARK 3 B33 (A**2) : 9.63100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5757 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 7795 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1088 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 120 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 847 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 5757 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 66 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINT 1: CSDX_PROTGEO.DAT (V1.40) REMARK 3 20080428. RESTRAINT 2: NUCLGEO.DAT (V1.10) 20070206. RESTRAINT 3: REMARK 3 BCORREL.DAT (V1.15) 20080423. RESTRAINT 4: CONTACT.DAT (V1.15) REMARK 3 20070207. RESTRAINT 5: ASSUME.DAT (V1.8) 20070124. NCS MODEL: REMARK 3 RESTRAINT LSSR. TARGET RESTRAINT: NONE. REMARK 4 REMARK 4 3I4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: IN HOUSE GSK3B STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M POTASSIUM FLUORIDE, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.14500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.14500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 PHE A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 PRO A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 GLY A 24 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 ALA A 386 REMARK 465 ALA A 387 REMARK 465 ALA A 388 REMARK 465 SER A 389 REMARK 465 THR A 390 REMARK 465 PRO A 391 REMARK 465 THR A 392 REMARK 465 ASN A 393 REMARK 465 ALA A 394 REMARK 465 THR A 395 REMARK 465 ALA A 396 REMARK 465 ALA A 397 REMARK 465 SER A 398 REMARK 465 ASP A 399 REMARK 465 ALA A 400 REMARK 465 ASN A 401 REMARK 465 THR A 402 REMARK 465 GLY A 403 REMARK 465 ASP A 404 REMARK 465 ARG A 405 REMARK 465 GLY A 406 REMARK 465 GLN A 407 REMARK 465 THR A 408 REMARK 465 ASN A 409 REMARK 465 ASN A 410 REMARK 465 ALA A 411 REMARK 465 ALA A 412 REMARK 465 SER A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 ALA A 416 REMARK 465 SER A 417 REMARK 465 ASN A 418 REMARK 465 SER A 419 REMARK 465 THR A 420 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 PHE B 10 REMARK 465 ALA B 11 REMARK 465 GLU B 12 REMARK 465 SER B 13 REMARK 465 CYS B 14 REMARK 465 LYS B 15 REMARK 465 PRO B 16 REMARK 465 VAL B 17 REMARK 465 GLN B 18 REMARK 465 GLN B 19 REMARK 465 PRO B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 PHE B 23 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 MET B 26 REMARK 465 LYS B 27 REMARK 465 VAL B 28 REMARK 465 SER B 29 REMARK 465 ARG B 30 REMARK 465 ASP B 31 REMARK 465 LYS B 32 REMARK 465 ASP B 33 REMARK 465 GLY B 34 REMARK 465 SER B 35 REMARK 465 ARG B 383 REMARK 465 ILE B 384 REMARK 465 GLN B 385 REMARK 465 ALA B 386 REMARK 465 ALA B 387 REMARK 465 ALA B 388 REMARK 465 SER B 389 REMARK 465 THR B 390 REMARK 465 PRO B 391 REMARK 465 THR B 392 REMARK 465 ASN B 393 REMARK 465 ALA B 394 REMARK 465 THR B 395 REMARK 465 ALA B 396 REMARK 465 ALA B 397 REMARK 465 SER B 398 REMARK 465 ASP B 399 REMARK 465 ALA B 400 REMARK 465 ASN B 401 REMARK 465 THR B 402 REMARK 465 GLY B 403 REMARK 465 ASP B 404 REMARK 465 ARG B 405 REMARK 465 GLY B 406 REMARK 465 GLN B 407 REMARK 465 THR B 408 REMARK 465 ASN B 409 REMARK 465 ASN B 410 REMARK 465 ALA B 411 REMARK 465 ALA B 412 REMARK 465 SER B 413 REMARK 465 ALA B 414 REMARK 465 SER B 415 REMARK 465 ALA B 416 REMARK 465 SER B 417 REMARK 465 ASN B 418 REMARK 465 SER B 419 REMARK 465 THR B 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 25 OG REMARK 470 SER A 29 OG REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 33 CB CG OD1 OD2 REMARK 470 SER A 35 CB OG REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 GLN A 385 CG CD OE1 NE2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 ASP B 124 CG OD1 OD2 REMARK 470 HIS B 145 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 HIS B 299 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 89 O HOH B 735 1.63 REMARK 500 NH2 ARG A 50 O HOH A 445 2.00 REMARK 500 O HOH A 738 O HOH A 747 2.05 REMARK 500 O LEU B 81 O HOH B 742 2.12 REMARK 500 NH2 ARG A 96 O HOH A 421 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PRO A 307 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO B 48 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG B 223 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 91.91 -68.77 REMARK 500 ASP A 124 -2.53 79.11 REMARK 500 ARG A 180 -7.51 77.65 REMARK 500 ASP A 181 50.27 -146.60 REMARK 500 ASP A 200 78.24 58.71 REMARK 500 CYS A 218 137.44 79.29 REMARK 500 TYR A 221 -1.22 83.63 REMARK 500 ASN A 370 75.79 -153.39 REMARK 500 ARG B 180 -6.36 75.92 REMARK 500 ASP B 181 50.57 -145.84 REMARK 500 ASP B 200 77.59 58.14 REMARK 500 CYS B 218 137.70 79.53 REMARK 500 ARG B 220 134.24 -37.33 REMARK 500 TYR B 221 -1.88 78.16 REMARK 500 TYR B 288 143.44 -171.44 REMARK 500 ASN B 370 76.65 -153.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 282 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z48 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z48 B 501 DBREF 3I4B A 7 420 UNP P49841 GSK3B_HUMAN 7 420 DBREF 3I4B B 7 420 UNP P49841 GSK3B_HUMAN 7 420 SEQRES 1 A 414 THR THR SER PHE ALA GLU SER CYS LYS PRO VAL GLN GLN SEQRES 2 A 414 PRO SER ALA PHE GLY SER MET LYS VAL SER ARG ASP LYS SEQRES 3 A 414 ASP GLY SER LYS VAL THR THR VAL VAL ALA THR PRO GLY SEQRES 4 A 414 GLN GLY PRO ASP ARG PRO GLN GLU VAL SER TYR THR ASP SEQRES 5 A 414 THR LYS VAL ILE GLY ASN GLY SER PHE GLY VAL VAL TYR SEQRES 6 A 414 GLN ALA LYS LEU CYS ASP SER GLY GLU LEU VAL ALA ILE SEQRES 7 A 414 LYS LYS VAL LEU GLN ASP LYS ARG PHE LYS ASN ARG GLU SEQRES 8 A 414 LEU GLN ILE MET ARG LYS LEU ASP HIS CYS ASN ILE VAL SEQRES 9 A 414 ARG LEU ARG TYR PHE PHE TYR SER SER GLY GLU LYS LYS SEQRES 10 A 414 ASP GLU VAL TYR LEU ASN LEU VAL LEU ASP TYR VAL PRO SEQRES 11 A 414 GLU THR VAL TYR ARG VAL ALA ARG HIS TYR SER ARG ALA SEQRES 12 A 414 LYS GLN THR LEU PRO VAL ILE TYR VAL LYS LEU TYR MET SEQRES 13 A 414 TYR GLN LEU PHE ARG SER LEU ALA TYR ILE HIS SER PHE SEQRES 14 A 414 GLY ILE CYS HIS ARG ASP ILE LYS PRO GLN ASN LEU LEU SEQRES 15 A 414 LEU ASP PRO ASP THR ALA VAL LEU LYS LEU CYS ASP PHE SEQRES 16 A 414 GLY SER ALA LYS GLN LEU VAL ARG GLY GLU PRO ASN VAL SEQRES 17 A 414 SER TYR ILE CYS SER ARG TYR TYR ARG ALA PRO GLU LEU SEQRES 18 A 414 ILE PHE GLY ALA THR ASP TYR THR SER SER ILE ASP VAL SEQRES 19 A 414 TRP SER ALA GLY CYS VAL LEU ALA GLU LEU LEU LEU GLY SEQRES 20 A 414 GLN PRO ILE PHE PRO GLY ASP SER GLY VAL ASP GLN LEU SEQRES 21 A 414 VAL GLU ILE ILE LYS VAL LEU GLY THR PRO THR ARG GLU SEQRES 22 A 414 GLN ILE ARG GLU MET ASN PRO ASN TYR THR GLU PHE LYS SEQRES 23 A 414 PHE PRO GLN ILE LYS ALA HIS PRO TRP THR LYS VAL PHE SEQRES 24 A 414 ARG PRO ARG THR PRO PRO GLU ALA ILE ALA LEU CYS SER SEQRES 25 A 414 ARG LEU LEU GLU TYR THR PRO THR ALA ARG LEU THR PRO SEQRES 26 A 414 LEU GLU ALA CYS ALA HIS SER PHE PHE ASP GLU LEU ARG SEQRES 27 A 414 ASP PRO ASN VAL LYS LEU PRO ASN GLY ARG ASP THR PRO SEQRES 28 A 414 ALA LEU PHE ASN PHE THR THR GLN GLU LEU SER SER ASN SEQRES 29 A 414 PRO PRO LEU ALA THR ILE LEU ILE PRO PRO HIS ALA ARG SEQRES 30 A 414 ILE GLN ALA ALA ALA SER THR PRO THR ASN ALA THR ALA SEQRES 31 A 414 ALA SER ASP ALA ASN THR GLY ASP ARG GLY GLN THR ASN SEQRES 32 A 414 ASN ALA ALA SER ALA SER ALA SER ASN SER THR SEQRES 1 B 414 THR THR SER PHE ALA GLU SER CYS LYS PRO VAL GLN GLN SEQRES 2 B 414 PRO SER ALA PHE GLY SER MET LYS VAL SER ARG ASP LYS SEQRES 3 B 414 ASP GLY SER LYS VAL THR THR VAL VAL ALA THR PRO GLY SEQRES 4 B 414 GLN GLY PRO ASP ARG PRO GLN GLU VAL SER TYR THR ASP SEQRES 5 B 414 THR LYS VAL ILE GLY ASN GLY SER PHE GLY VAL VAL TYR SEQRES 6 B 414 GLN ALA LYS LEU CYS ASP SER GLY GLU LEU VAL ALA ILE SEQRES 7 B 414 LYS LYS VAL LEU GLN ASP LYS ARG PHE LYS ASN ARG GLU SEQRES 8 B 414 LEU GLN ILE MET ARG LYS LEU ASP HIS CYS ASN ILE VAL SEQRES 9 B 414 ARG LEU ARG TYR PHE PHE TYR SER SER GLY GLU LYS LYS SEQRES 10 B 414 ASP GLU VAL TYR LEU ASN LEU VAL LEU ASP TYR VAL PRO SEQRES 11 B 414 GLU THR VAL TYR ARG VAL ALA ARG HIS TYR SER ARG ALA SEQRES 12 B 414 LYS GLN THR LEU PRO VAL ILE TYR VAL LYS LEU TYR MET SEQRES 13 B 414 TYR GLN LEU PHE ARG SER LEU ALA TYR ILE HIS SER PHE SEQRES 14 B 414 GLY ILE CYS HIS ARG ASP ILE LYS PRO GLN ASN LEU LEU SEQRES 15 B 414 LEU ASP PRO ASP THR ALA VAL LEU LYS LEU CYS ASP PHE SEQRES 16 B 414 GLY SER ALA LYS GLN LEU VAL ARG GLY GLU PRO ASN VAL SEQRES 17 B 414 SER TYR ILE CYS SER ARG TYR TYR ARG ALA PRO GLU LEU SEQRES 18 B 414 ILE PHE GLY ALA THR ASP TYR THR SER SER ILE ASP VAL SEQRES 19 B 414 TRP SER ALA GLY CYS VAL LEU ALA GLU LEU LEU LEU GLY SEQRES 20 B 414 GLN PRO ILE PHE PRO GLY ASP SER GLY VAL ASP GLN LEU SEQRES 21 B 414 VAL GLU ILE ILE LYS VAL LEU GLY THR PRO THR ARG GLU SEQRES 22 B 414 GLN ILE ARG GLU MET ASN PRO ASN TYR THR GLU PHE LYS SEQRES 23 B 414 PHE PRO GLN ILE LYS ALA HIS PRO TRP THR LYS VAL PHE SEQRES 24 B 414 ARG PRO ARG THR PRO PRO GLU ALA ILE ALA LEU CYS SER SEQRES 25 B 414 ARG LEU LEU GLU TYR THR PRO THR ALA ARG LEU THR PRO SEQRES 26 B 414 LEU GLU ALA CYS ALA HIS SER PHE PHE ASP GLU LEU ARG SEQRES 27 B 414 ASP PRO ASN VAL LYS LEU PRO ASN GLY ARG ASP THR PRO SEQRES 28 B 414 ALA LEU PHE ASN PHE THR THR GLN GLU LEU SER SER ASN SEQRES 29 B 414 PRO PRO LEU ALA THR ILE LEU ILE PRO PRO HIS ALA ARG SEQRES 30 B 414 ILE GLN ALA ALA ALA SER THR PRO THR ASN ALA THR ALA SEQRES 31 B 414 ALA SER ASP ALA ASN THR GLY ASP ARG GLY GLN THR ASN SEQRES 32 B 414 ASN ALA ALA SER ALA SER ALA SER ASN SER THR HET Z48 A 501 31 HET Z48 B 501 31 HETNAM Z48 N-[(1S)-2-HYDROXY-1-PHENYLETHYL]-4-[5-METHYL-2- HETNAM 2 Z48 (PHENYLAMINO)PYRIMIDIN-4-YL]-1H-PYRROLE-2-CARBOXAMIDE FORMUL 3 Z48 2(C24 H23 N5 O2) FORMUL 5 HOH *735(H2 O) HELIX 1 1 ASN A 95 LYS A 103 1 9 HELIX 2 2 VAL A 139 ALA A 149 1 11 HELIX 3 3 PRO A 154 SER A 174 1 21 HELIX 4 4 LYS A 183 GLN A 185 5 3 HELIX 5 5 ALA A 224 PHE A 229 1 6 HELIX 6 6 SER A 236 GLY A 253 1 18 HELIX 7 7 SER A 261 GLY A 274 1 14 HELIX 8 8 THR A 277 ASN A 285 1 9 HELIX 9 9 PRO A 300 PHE A 305 1 6 HELIX 10 10 PRO A 310 LEU A 321 1 12 HELIX 11 11 THR A 324 ARG A 328 5 5 HELIX 12 12 THR A 330 ALA A 336 1 7 HELIX 13 13 HIS A 337 ASP A 345 5 9 HELIX 14 14 THR A 363 SER A 368 1 6 HELIX 15 15 ASN A 370 PRO A 372 5 3 HELIX 16 16 LEU A 373 ILE A 378 1 6 HELIX 17 17 PRO A 379 ILE A 384 5 6 HELIX 18 18 ASN B 95 LYS B 103 1 9 HELIX 19 19 VAL B 139 ALA B 149 1 11 HELIX 20 20 PRO B 154 SER B 174 1 21 HELIX 21 21 LYS B 183 GLN B 185 5 3 HELIX 22 22 ALA B 224 PHE B 229 1 6 HELIX 23 23 SER B 236 GLY B 253 1 18 HELIX 24 24 SER B 261 GLY B 274 1 14 HELIX 25 25 THR B 277 ASN B 285 1 9 HELIX 26 26 PRO B 300 PHE B 305 1 6 HELIX 27 27 PRO B 310 LEU B 321 1 12 HELIX 28 28 THR B 324 ARG B 328 5 5 HELIX 29 29 THR B 330 ALA B 336 1 7 HELIX 30 30 HIS B 337 ASP B 345 5 9 HELIX 31 31 THR B 363 SER B 368 1 6 HELIX 32 32 ASN B 370 PRO B 372 5 3 HELIX 33 33 LEU B 373 ILE B 378 1 6 SHEET 1 A 8 MET A 26 SER A 29 0 SHEET 2 A 8 VAL A 37 PRO A 44 -1 O THR A 39 N LYS A 27 SHEET 3 A 8 LEU A 112 SER A 118 -1 O PHE A 115 N THR A 43 SHEET 4 A 8 TYR A 127 ASP A 133 -1 O TYR A 127 N SER A 118 SHEET 5 A 8 LEU A 81 LEU A 88 -1 N ALA A 83 O LEU A 132 SHEET 6 A 8 GLY A 68 LEU A 75 -1 N VAL A 69 O LYS A 86 SHEET 7 A 8 GLN A 52 GLY A 65 -1 N LYS A 60 O GLN A 72 SHEET 8 A 8 VAL A 37 PRO A 44 -1 N ALA A 42 O GLN A 52 SHEET 1 B 3 GLU A 137 THR A 138 0 SHEET 2 B 3 LEU A 187 ASP A 190 -1 O LEU A 189 N GLU A 137 SHEET 3 B 3 VAL A 195 LEU A 198 -1 O LYS A 197 N LEU A 188 SHEET 1 C 2 ILE A 177 CYS A 178 0 SHEET 2 C 2 LYS A 205 GLN A 206 -1 O LYS A 205 N CYS A 178 SHEET 1 D 7 THR B 38 PRO B 44 0 SHEET 2 D 7 GLN B 52 GLY B 65 -1 O VAL B 54 N VAL B 40 SHEET 3 D 7 GLY B 68 LEU B 75 -1 O GLN B 72 N LYS B 60 SHEET 4 D 7 LEU B 81 LEU B 88 -1 O LYS B 86 N VAL B 69 SHEET 5 D 7 TYR B 127 ASP B 133 -1 O LEU B 130 N LYS B 85 SHEET 6 D 7 LEU B 112 SER B 118 -1 N TYR B 114 O VAL B 131 SHEET 7 D 7 THR B 38 PRO B 44 -1 N THR B 43 O PHE B 115 SHEET 1 E 3 GLU B 137 THR B 138 0 SHEET 2 E 3 LEU B 187 ASP B 190 -1 O LEU B 189 N GLU B 137 SHEET 3 E 3 VAL B 195 LEU B 198 -1 O LYS B 197 N LEU B 188 SHEET 1 F 2 ILE B 177 CYS B 178 0 SHEET 2 F 2 LYS B 205 GLN B 206 -1 O LYS B 205 N CYS B 178 SITE 1 AC1 16 GLY A 65 SER A 66 GLY A 68 VAL A 70 SITE 2 AC1 16 ALA A 83 LYS A 85 LEU A 132 ASP A 133 SITE 3 AC1 16 VAL A 135 PRO A 136 ARG A 141 ASN A 186 SITE 4 AC1 16 LEU A 188 ASP A 200 HOH A 438 HOH A 448 SITE 1 AC2 15 GLY B 65 SER B 66 GLY B 68 VAL B 70 SITE 2 AC2 15 ALA B 83 LYS B 85 ASP B 133 TYR B 134 SITE 3 AC2 15 VAL B 135 PRO B 136 ASN B 186 LEU B 188 SITE 4 AC2 15 ASP B 200 HOH B 482 HOH B 519 CRYST1 82.750 86.100 178.290 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005609 0.00000