HEADER HYDROLASE 01-JUL-09 3I4I TITLE CRYSTAL STRUCTURE OF A PROKARYOTIC BETA-1,3-1,4-GLUCANASE (LICHENASE) TITLE 2 DERIVED FROM A MOUSE HINDGUT METAGENOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,3-1,4-BETA-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-243; COMPND 5 EC: 3.2.1.73; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED MURINE LARGE BOWEL BACTERIUM BAC 14; SOURCE 3 ORGANISM_TAXID: 314099; SOURCE 4 GENE: BGL14A1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-80L KEYWDS BETA-SANDWICH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKATANI,T.D.NALDER,G.W.TANNOCK,J.F.CUTFIELD,R.W.JACK,A.CARNE REVDAT 2 01-NOV-23 3I4I 1 REMARK SEQADV LINK REVDAT 1 21-JUL-10 3I4I 0 JRNL AUTH Y.NAKATANI,T.D.NALDER,G.W.TANNOCK,J.F.CUTFIELD,R.W.JACK, JRNL AUTH 2 A.CARNE JRNL TITL CRYSTAL STRUCTURE OF A PROKARYOTIC BETA-1,3-1,4-GLUCANASE JRNL TITL 2 (LICHENASE) DERIVED FROM A MOUSE HINDGUT METAGENOME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 41198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2248 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.82000 REMARK 3 B22 (A**2) : -1.51000 REMARK 3 B33 (A**2) : -7.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3653 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4998 ; 1.473 ; 1.913 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 8.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;36.069 ;24.416 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;16.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2967 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2144 ; 1.585 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3449 ; 2.320 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 3.575 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1544 ; 4.611 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 216 NULL REMARK 3 1 B 3 B 216 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1728 ; 0.26 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1728 ; 1.56 ; 2.00 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.586 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.414 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 37.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BYH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG BUFFER PH 8.0, 25% PEG 1500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.68350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.90200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.68350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.90200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ARG A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 ILE A -3 REMARK 465 GLU A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 ASN A 1 REMARK 465 MET B -17 REMARK 465 ARG B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 ILE B -3 REMARK 465 GLU B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 ASN B 1 REMARK 465 VAL B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 12 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 TYR B 12 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 509 O HOH B 510 2.07 REMARK 500 O HOH A 241 O HOH A 505 2.13 REMARK 500 OE1 GLU B 166 O HOH B 273 2.14 REMARK 500 O GLY A 28 O HOH A 254 2.16 REMARK 500 N LEU B 204 O HOH B 519 2.17 REMARK 500 O HOH B 330 O HOH B 450 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 79 CB - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 VAL B 79 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 43.21 -97.56 REMARK 500 ASN A 86 147.08 -176.35 REMARK 500 ASP A 116 93.99 -166.35 REMARK 500 SER A 128 -6.85 84.16 REMARK 500 ASN B 31 46.21 -90.99 REMARK 500 ASN B 86 150.42 177.03 REMARK 500 ASP B 116 92.33 -162.44 REMARK 500 SER B 128 -8.84 83.72 REMARK 500 ARG B 139 47.90 -98.80 REMARK 500 PHE B 140 164.20 178.42 REMARK 500 TYR B 171 -38.16 -134.77 REMARK 500 VAL B 191 48.27 -141.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 9 O REMARK 620 2 GLY A 44 O 77.9 REMARK 620 3 ASP A 209 O 77.9 92.1 REMARK 620 4 ASP A 209 OD1 148.1 95.9 71.0 REMARK 620 5 HOH A 219 O 139.1 85.2 140.4 70.0 REMARK 620 6 HOH A 265 O 98.7 175.6 90.0 88.5 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 9 O REMARK 620 2 GLY B 44 O 79.6 REMARK 620 3 ASP B 209 O 70.6 96.3 REMARK 620 4 ASP B 209 OD1 141.5 96.0 72.0 REMARK 620 5 HOH B 233 O 64.8 95.0 130.8 153.1 REMARK 620 6 HOH B 236 O 105.6 172.1 80.2 76.2 92.6 REMARK 620 7 HOH B 377 O 133.2 87.7 156.2 84.3 71.7 92.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1001 DBREF 3I4I A 1 216 UNP Q58WW0 Q58WW0_9BACT 28 243 DBREF 3I4I B 1 216 UNP Q58WW0 Q58WW0_9BACT 28 243 SEQADV 3I4I MET A -17 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I ARG A -16 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY A -15 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I SER A -14 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS A -13 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS A -12 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS A -11 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS A -10 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS A -9 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS A -8 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY A -7 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I SER A -6 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY A -5 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I SER A -4 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I ILE A -3 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLU A -2 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY A -1 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I ARG A 0 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I MET B -17 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I ARG B -16 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY B -15 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I SER B -14 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS B -13 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS B -12 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS B -11 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS B -10 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS B -9 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I HIS B -8 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY B -7 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I SER B -6 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY B -5 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I SER B -4 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I ILE B -3 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLU B -2 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I GLY B -1 UNP Q58WW0 EXPRESSION TAG SEQADV 3I4I ARG B 0 UNP Q58WW0 EXPRESSION TAG SEQRES 1 A 234 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLY SEQRES 2 A 234 SER ILE GLU GLY ARG ASN VAL PHE THR HIS PHE GLY GLU SEQRES 3 A 234 GLY PHE ASP TYR TYR ASP SER GLN LEU TRP GLU LYS ALA SEQRES 4 A 234 ASP GLY TRP GLY ASN GLY GLY VAL PHE ASN CYS ILE TRP SEQRES 5 A 234 ARG ALA TYR ASN ILE GLU LEU LYS ASP GLY ILE LEU ASN SEQRES 6 A 234 LEU SER ILE THR ASP ASP MET PRO SER SER SER LYS PRO SEQRES 7 A 234 TYR ALA GLY ALA GLU TYR ARG THR ARG ASP LYS PHE GLY SEQRES 8 A 234 TYR GLY LEU TYR GLN VAL ARG MET LYS PRO ALA LYS ASN SEQRES 9 A 234 PRO GLY ILE VAL SER SER PHE PHE THR TYR THR GLY PRO SEQRES 10 A 234 VAL HIS GLY THR PRO TRP ASP GLU ILE ASP ILE GLU PHE SEQRES 11 A 234 LEU GLY LYS ASP THR THR LYS VAL GLN PHE ASN TYR TYR SEQRES 12 A 234 THR ASN SER ALA GLY ASN HIS GLU TYR ILE TYR ASP LEU SEQRES 13 A 234 ARG PHE ASP ALA SER GLU ASP PHE HIS ILE TYR ALA PHE SEQRES 14 A 234 ASN TRP GLN PRO ASN TYR ILE ALA TRP LEU VAL ASP GLY SEQRES 15 A 234 GLU GLU VAL TYR ARG ALA TYR ASP ASP ILE PRO VAL HIS SEQRES 16 A 234 PRO GLY LYS ILE MET LEU ASN ILE TRP PRO GLY ILE GLY SEQRES 17 A 234 VAL ASP GLU TRP LEU GLY ALA TYR ASP GLY LYS THR ASN SEQRES 18 A 234 LEU THR ALA SER TYR ASP TRP VAL ALA TYR ASP PRO ILE SEQRES 1 B 234 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLY SEQRES 2 B 234 SER ILE GLU GLY ARG ASN VAL PHE THR HIS PHE GLY GLU SEQRES 3 B 234 GLY PHE ASP TYR TYR ASP SER GLN LEU TRP GLU LYS ALA SEQRES 4 B 234 ASP GLY TRP GLY ASN GLY GLY VAL PHE ASN CYS ILE TRP SEQRES 5 B 234 ARG ALA TYR ASN ILE GLU LEU LYS ASP GLY ILE LEU ASN SEQRES 6 B 234 LEU SER ILE THR ASP ASP MET PRO SER SER SER LYS PRO SEQRES 7 B 234 TYR ALA GLY ALA GLU TYR ARG THR ARG ASP LYS PHE GLY SEQRES 8 B 234 TYR GLY LEU TYR GLN VAL ARG MET LYS PRO ALA LYS ASN SEQRES 9 B 234 PRO GLY ILE VAL SER SER PHE PHE THR TYR THR GLY PRO SEQRES 10 B 234 VAL HIS GLY THR PRO TRP ASP GLU ILE ASP ILE GLU PHE SEQRES 11 B 234 LEU GLY LYS ASP THR THR LYS VAL GLN PHE ASN TYR TYR SEQRES 12 B 234 THR ASN SER ALA GLY ASN HIS GLU TYR ILE TYR ASP LEU SEQRES 13 B 234 ARG PHE ASP ALA SER GLU ASP PHE HIS ILE TYR ALA PHE SEQRES 14 B 234 ASN TRP GLN PRO ASN TYR ILE ALA TRP LEU VAL ASP GLY SEQRES 15 B 234 GLU GLU VAL TYR ARG ALA TYR ASP ASP ILE PRO VAL HIS SEQRES 16 B 234 PRO GLY LYS ILE MET LEU ASN ILE TRP PRO GLY ILE GLY SEQRES 17 B 234 VAL ASP GLU TRP LEU GLY ALA TYR ASP GLY LYS THR ASN SEQRES 18 B 234 LEU THR ALA SER TYR ASP TRP VAL ALA TYR ASP PRO ILE HET CA A1001 1 HET CA B1001 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *500(H2 O) HELIX 1 1 GLY A 98 GLY A 102 5 5 HELIX 2 2 VAL A 191 GLY A 196 1 6 HELIX 3 3 GLY B 98 GLY B 102 5 5 HELIX 4 4 ASP B 141 ASP B 145 5 5 HELIX 5 5 VAL B 191 GLY B 196 1 6 SHEET 1 A 7 GLU A 165 ALA A 170 0 SHEET 2 A 7 TYR A 157 VAL A 162 -1 N TRP A 160 O TYR A 168 SHEET 3 A 7 HIS A 147 GLN A 154 -1 N GLN A 154 O TYR A 157 SHEET 4 A 7 GLY A 75 LYS A 82 -1 N TYR A 77 O PHE A 151 SHEET 5 A 7 LEU A 204 ASP A 214 -1 O SER A 207 N LYS A 82 SHEET 6 A 7 ILE A 45 ASP A 52 -1 N LEU A 48 O ALA A 206 SHEET 7 A 7 ILE A 39 LYS A 42 -1 N GLU A 40 O ASN A 47 SHEET 1 B 5 PHE A 6 GLU A 8 0 SHEET 2 B 5 LEU A 204 ASP A 214 -1 O TYR A 213 N PHE A 6 SHEET 3 B 5 ILE A 45 ASP A 52 -1 N LEU A 48 O ALA A 206 SHEET 4 B 5 TYR A 61 THR A 68 -1 O ALA A 62 N THR A 51 SHEET 5 B 5 TRP A 18 LYS A 20 -1 N GLU A 19 O ARG A 67 SHEET 1 C 3 TRP A 18 LYS A 20 0 SHEET 2 C 3 TYR A 61 THR A 68 -1 O ARG A 67 N GLU A 19 SHEET 3 C 3 CYS A 32 TRP A 34 1 N ILE A 33 O GLY A 63 SHEET 1 D 8 ILE A 39 LYS A 42 0 SHEET 2 D 8 ILE A 45 ASP A 52 -1 O ASN A 47 N GLU A 40 SHEET 3 D 8 TYR A 61 THR A 68 -1 O ALA A 62 N THR A 51 SHEET 4 D 8 LYS A 180 PRO A 187 -1 O LEU A 183 N TYR A 66 SHEET 5 D 8 ILE A 89 THR A 97 -1 N PHE A 94 O MET A 182 SHEET 6 D 8 ASP A 106 LEU A 113 -1 O PHE A 112 N SER A 91 SHEET 7 D 8 LYS A 119 TYR A 125 -1 O GLN A 121 N GLU A 111 SHEET 8 D 8 TYR A 134 ASP A 137 -1 O TYR A 136 N VAL A 120 SHEET 1 E 4 PHE B 6 GLU B 8 0 SHEET 2 E 4 THR B 205 ASP B 214 -1 O TYR B 213 N PHE B 6 SHEET 3 E 4 ILE B 45 SER B 49 -1 N LEU B 46 O TYR B 208 SHEET 4 E 4 ILE B 39 LYS B 42 -1 N GLU B 40 O ASN B 47 SHEET 1 F 6 PHE B 6 GLU B 8 0 SHEET 2 F 6 THR B 205 ASP B 214 -1 O TYR B 213 N PHE B 6 SHEET 3 F 6 GLY B 75 LYS B 82 -1 N LYS B 82 O SER B 207 SHEET 4 F 6 HIS B 147 TRP B 153 -1 O TYR B 149 N VAL B 79 SHEET 5 F 6 ILE B 158 VAL B 162 -1 O ALA B 159 N ASN B 152 SHEET 6 F 6 GLU B 165 ALA B 170 -1 O VAL B 167 N TRP B 160 SHEET 1 G 3 TRP B 18 LYS B 20 0 SHEET 2 G 3 TYR B 61 THR B 68 -1 O ARG B 67 N GLU B 19 SHEET 3 G 3 THR B 51 ASP B 52 -1 N THR B 51 O ALA B 62 SHEET 1 H 7 CYS B 32 TRP B 34 0 SHEET 2 H 7 TYR B 61 THR B 68 1 O GLY B 63 N ILE B 33 SHEET 3 H 7 LYS B 180 PRO B 187 -1 O LEU B 183 N TYR B 66 SHEET 4 H 7 ILE B 89 THR B 97 -1 N PHE B 94 O MET B 182 SHEET 5 H 7 ASP B 106 LEU B 113 -1 O PHE B 112 N SER B 91 SHEET 6 H 7 LYS B 119 TYR B 125 -1 O TYR B 125 N GLU B 107 SHEET 7 H 7 TYR B 134 ASP B 137 -1 O TYR B 136 N VAL B 120 LINK O GLY A 9 CA CA A1001 1555 1555 2.61 LINK O GLY A 44 CA CA A1001 1555 1555 2.44 LINK O ASP A 209 CA CA A1001 1555 1555 2.55 LINK OD1 ASP A 209 CA CA A1001 1555 1555 2.36 LINK O HOH A 219 CA CA A1001 1555 1555 2.47 LINK O HOH A 265 CA CA A1001 1555 1555 2.56 LINK O GLY B 9 CA CA B1001 1555 1555 2.50 LINK O GLY B 44 CA CA B1001 1555 1555 2.38 LINK O ASP B 209 CA CA B1001 1555 1555 2.49 LINK OD1 ASP B 209 CA CA B1001 1555 1555 2.24 LINK O HOH B 233 CA CA B1001 1555 1555 2.95 LINK O HOH B 236 CA CA B1001 1555 1555 2.57 LINK O HOH B 377 CA CA B1001 1555 1555 2.23 CISPEP 1 THR B 202 ASN B 203 0 7.84 CISPEP 2 THR B 202 ASN B 203 0 6.30 SITE 1 AC1 5 GLY A 9 GLY A 44 ASP A 209 HOH A 219 SITE 2 AC1 5 HOH A 265 SITE 1 AC2 6 GLY B 9 GLY B 44 ASP B 209 HOH B 233 SITE 2 AC2 6 HOH B 236 HOH B 377 CRYST1 79.367 79.804 85.470 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011700 0.00000