HEADER OXIDOREDUCTASE 03-JUL-09 3I4V TITLE CRYSTAL STRUCTURE DETERMINATION OF CATECHOL 1,2-DIOXYGENASE FROM TITLE 2 RHODOCOCCUS OPACUS 1CP IN COMPLEX WITH 3-CHLOROCATECHOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,2-CTD; COMPND 5 EC: 1.13.11.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS OPACUS; SOURCE 3 ORGANISM_COMMON: NOCARDIA OPACA; SOURCE 4 ORGANISM_TAXID: 37919; SOURCE 5 STRAIN: 1CP; SOURCE 6 OTHER_DETAILS: GROWN ON BENZOATE KEYWDS BETA-SANDWICH, OXIDOREDUCTASE, AROMATIC HYDROCARBONS CATABOLISM, KEYWDS 2 DIOXYGENASE, IRON, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR I.MATERA,M.FERRARONI,F.BRIGANTI,A.SCOZZAFAVA REVDAT 3 21-FEB-24 3I4V 1 REMARK REVDAT 2 26-MAY-10 3I4V 1 JRNL REVDAT 1 12-JAN-10 3I4V 0 JRNL AUTH I.MATERA,M.FERRARONI,M.KOLOMYTSEVA,L.GOLOVLEVA,A.SCOZZAFAVA, JRNL AUTH 2 F.BRIGANTI JRNL TITL CATECHOL 1,2-DIOXYGENASE FROM THE GRAM-POSITIVE RHODOCOCCUS JRNL TITL 2 OPACUS 1CP: QUANTITATIVE STRUCTURE/ACTIVITY RELATIONSHIP AND JRNL TITL 3 THE CRYSTAL STRUCTURES OF NATIVE ENZYME AND CATECHOLS JRNL TITL 4 ADDUCTS. JRNL REF J.STRUCT.BIOL. V. 170 548 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20040374 JRNL DOI 10.1016/J.JSB.2009.12.023 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 14310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.61000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : -2.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2111 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2870 ; 1.643 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 7.337 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;38.465 ;25.052 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;17.230 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.687 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1631 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 0.811 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2065 ; 1.433 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 835 ; 2.096 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 805 ; 3.079 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : 0.39500 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 39% PEG 400, 0.1 M HEPES, 0.1 M REMARK 280 MAGNESIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.32750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.94300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.32750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.94300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -6.96489 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.93703 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 PHE A 20 REMARK 465 LYS A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 ARG A 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 55 O HOH A 372 2.02 REMARK 500 O HOH A 286 O HOH A 352 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 60.02 71.74 REMARK 500 ASN A 158 -19.59 -41.30 REMARK 500 GLN A 164 11.92 59.58 REMARK 500 GLU A 182 -52.12 -13.61 REMARK 500 ASP A 201 46.91 -84.09 REMARK 500 PRO A 215 35.73 -93.99 REMARK 500 ALA A 227 148.94 179.00 REMARK 500 SER A 232 159.10 -46.60 REMARK 500 SER A 247 49.40 -155.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6PL A 283 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 281 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 162 OH REMARK 620 2 HIS A 220 NE2 100.1 REMARK 620 3 HIS A 222 NE2 84.8 105.8 REMARK 620 4 3CE A 282 O1 104.7 106.1 144.4 REMARK 620 5 3CE A 282 O2 171.4 87.6 89.5 76.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3CE A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PL A 283 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HGI RELATED DB: PDB REMARK 900 NATIVE ENZYME REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE MATCHES THE GENBANK DEPOSITION WITH ACCESSION CODE REMARK 999 CAA67941, IN WHICH ALL 280 RESIDUES ARE PRESENT. DBREF 3I4V A 11 280 UNP P95607 CATA_RHOOP 1 270 SEQADV 3I4V MET A 1 UNP P95607 SEE REMARK 999 SEQADV 3I4V THR A 2 UNP P95607 SEE REMARK 999 SEQADV 3I4V THR A 3 UNP P95607 SEE REMARK 999 SEQADV 3I4V THR A 4 UNP P95607 SEE REMARK 999 SEQADV 3I4V GLU A 5 UNP P95607 SEE REMARK 999 SEQADV 3I4V SER A 6 UNP P95607 SEE REMARK 999 SEQADV 3I4V PRO A 7 UNP P95607 SEE REMARK 999 SEQADV 3I4V THR A 8 UNP P95607 SEE REMARK 999 SEQADV 3I4V ALA A 9 UNP P95607 SEE REMARK 999 SEQADV 3I4V ALA A 10 UNP P95607 SEE REMARK 999 SEQRES 1 A 280 MET THR THR THR GLU SER PRO THR ALA ALA GLY SER GLY SEQRES 2 A 280 SER ALA ALA THR ASP LYS PHE LYS ALA GLU ARG ALA THR SEQRES 3 A 280 ALA ASP THR SER PRO GLU ARG LEU ALA ALA ILE ALA LYS SEQRES 4 A 280 ASP ALA LEU GLY ALA LEU ASN ASP VAL ILE LEU LYS HIS SEQRES 5 A 280 GLY VAL THR TYR PRO GLU TYR ARG VAL PHE LYS GLN TRP SEQRES 6 A 280 LEU ILE ASP VAL GLY GLU GLY GLY GLU TRP PRO LEU PHE SEQRES 7 A 280 LEU ASP VAL PHE ILE GLU HIS SER VAL GLU GLU VAL LEU SEQRES 8 A 280 ALA ARG SER ARG LYS GLY THR MET GLY SER ILE GLU GLY SEQRES 9 A 280 PRO TYR TYR ILE GLU ASN SER PRO GLU LEU PRO SER LYS SEQRES 10 A 280 CYS THR LEU PRO MET ARG GLU GLU ASP GLU LYS ILE THR SEQRES 11 A 280 PRO LEU VAL PHE SER GLY GLN VAL THR ASP LEU ASP GLY SEQRES 12 A 280 ASN GLY LEU ALA GLY ALA LYS VAL GLU LEU TRP HIS ALA SEQRES 13 A 280 ASP ASN ASP GLY TYR TYR SER GLN PHE ALA PRO HIS LEU SEQRES 14 A 280 PRO GLU TRP ASN LEU ARG GLY THR ILE ILE ALA ASP GLU SEQRES 15 A 280 GLU GLY ARG TYR GLU ILE THR THR ILE GLN PRO ALA PRO SEQRES 16 A 280 TYR GLN ILE PRO THR ASP GLY PRO THR GLY GLN PHE ILE SEQRES 17 A 280 GLU ALA GLN ASN GLY HIS PRO TRP ARG PRO ALA HIS LEU SEQRES 18 A 280 HIS LEU ILE VAL SER ALA PRO GLY LYS GLU SER VAL THR SEQRES 19 A 280 THR GLN LEU TYR PHE LYS GLY GLY GLU TRP ILE ASP SER SEQRES 20 A 280 ASP VAL ALA SER ALA THR LYS PRO GLU LEU ILE LEU ASP SEQRES 21 A 280 PRO LYS THR GLY ASP ASP GLY LYS ASN TYR VAL THR TYR SEQRES 22 A 280 ASN PHE VAL LEU ASP PRO ALA HET FE A 281 1 HET 3CE A 282 9 HET 6PL A 283 41 HETNAM FE FE (III) ION HETNAM 3CE 3-CHLOROBENZENE-1,2-DIOL HETNAM 6PL (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7- HETNAM 2 6PL [(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4- HETNAM 3 6PL PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE HETSYN 6PL 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE FORMUL 2 FE FE 3+ FORMUL 3 3CE C6 H5 CL O2 FORMUL 4 6PL C42 H85 N O8 P 1+ FORMUL 5 HOH *93(H2 O) HELIX 1 1 SER A 30 GLY A 53 1 24 HELIX 2 2 THR A 55 GLY A 72 1 18 HELIX 3 3 GLU A 74 ILE A 83 1 10 HELIX 4 4 ILE A 83 ALA A 92 1 10 HELIX 5 5 ARG A 93 ARG A 95 5 3 HELIX 6 6 ARG A 123 ILE A 129 5 7 HELIX 7 7 GLY A 202 ALA A 210 1 9 HELIX 8 8 LYS A 254 GLU A 256 5 3 SHEET 1 A 6 GLU A 113 LEU A 114 0 SHEET 2 A 6 ARG A 175 ALA A 180 1 O ILE A 179 N LEU A 114 SHEET 3 A 6 ALA A 149 TRP A 154 -1 N VAL A 151 O ILE A 178 SHEET 4 A 6 LEU A 221 SER A 226 -1 O ILE A 224 N GLU A 152 SHEET 5 A 6 VAL A 233 PHE A 239 -1 O VAL A 233 N VAL A 225 SHEET 6 A 6 ILE A 258 LEU A 259 1 O LEU A 259 N TYR A 238 SHEET 1 B 5 LYS A 117 THR A 119 0 SHEET 2 B 5 ARG A 185 ILE A 191 1 O THR A 189 N CYS A 118 SHEET 3 B 5 PRO A 131 ASP A 140 -1 N PHE A 134 O ILE A 188 SHEET 4 B 5 ASN A 269 THR A 272 1 O VAL A 271 N SER A 135 SHEET 5 B 5 LYS A 262 THR A 263 -1 N LYS A 262 O TYR A 270 SHEET 1 C 4 LYS A 117 THR A 119 0 SHEET 2 C 4 ARG A 185 ILE A 191 1 O THR A 189 N CYS A 118 SHEET 3 C 4 PRO A 131 ASP A 140 -1 N PHE A 134 O ILE A 188 SHEET 4 C 4 PHE A 275 LEU A 277 1 O PHE A 275 N THR A 139 LINK OH TYR A 162 FE FE A 281 1555 1555 1.97 LINK NE2 HIS A 220 FE FE A 281 1555 1555 2.40 LINK NE2 HIS A 222 FE FE A 281 1555 1555 2.25 LINK FE FE A 281 O1 3CE A 282 1555 1555 2.33 LINK FE FE A 281 O2 3CE A 282 1555 1555 2.11 SITE 1 AC1 4 TYR A 162 HIS A 220 HIS A 222 3CE A 282 SITE 1 AC2 9 ILE A 102 PRO A 105 TYR A 106 TYR A 162 SITE 2 AC2 9 TYR A 196 ARG A 217 HIS A 220 HIS A 222 SITE 3 AC2 9 FE A 281 SITE 1 AC3 13 ALA A 25 THR A 26 ALA A 27 THR A 29 SITE 2 AC3 13 LEU A 34 ILE A 37 VAL A 48 ILE A 49 SITE 3 AC3 13 GLU A 58 VAL A 61 GLN A 206 PHE A 207 SITE 4 AC3 13 HOH A 364 CRYST1 90.655 37.886 75.260 90.00 95.31 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011031 0.000000 0.001025 0.00000 SCALE2 0.000000 0.026395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013344 0.00000