HEADER TRANSFERASE 03-JUL-09 3I4X TITLE CRYSTAL STRUCTURE OF THE DIMETHYLALLYL TRYPTOPHAN SYNTHASE FGAPT2 FROM TITLE 2 ASPERGILLUS FUMIGATUS IN COMPLEX WITH TRP AND DMSPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN DIMETHYLALLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-TRYPTOPHAN DIMETHYLALLYL TRANSFERASE, DMATS, ALL-TRANS- COMPND 5 HEXAPRENYL-DIPHOSPHATE SYNTHASE; COMPND 6 EC: 2.5.1.34; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_COMMON: SARTORYA FUMIGATA; SOURCE 4 ORGANISM_TAXID: 5085; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS KEYWDS PRENYL TRANSFERASE, DIMETHYLALLYL TRYPTOPHAN SYNTHASE, PT BARREL, KEYWDS 2 TRYPTOPHAN COMPLEX, DIMETHYLALLYL S-THIOLODIPHOSPHATE COMPLEX, KEYWDS 3 ALKALOID METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHALL,G.ZOCHER,T.STEHLE REVDAT 5 01-NOV-23 3I4X 1 REMARK SEQADV HETSYN REVDAT 4 16-OCT-19 3I4X 1 COMPND FORMUL REVDAT 3 13-JUL-11 3I4X 1 VERSN REVDAT 2 08-SEP-09 3I4X 1 JRNL REVDAT 1 01-SEP-09 3I4X 0 JRNL AUTH U.METZGER,C.SCHALL,G.ZOCHER,I.UNSOELD,E.STEC,S.-M.LI, JRNL AUTH 2 L.HEIDE,T.STEHLE JRNL TITL THE STRUCTURE OF DIMETHYLALLYL TRYPTOPHAN SYNTHASE REVEALS A JRNL TITL 2 COMMON ARCHITECTURE OF AROMATIC PRENYLTRANSFERASES IN FUNGI JRNL TITL 3 AND BACTERIA JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 14309 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19706516 JRNL DOI 10.1073/PNAS.0904897106 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT R FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1663 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4037 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.554 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7192 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9800 ; 1.553 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 861 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 337 ;35.056 ;22.730 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1180 ;14.945 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;18.034 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1067 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5509 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4288 ; 1.699 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6957 ; 2.552 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2904 ; 2.257 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2835 ; 3.117 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6040 80.9560 11.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: 0.2163 REMARK 3 T33: 0.1937 T12: 0.0024 REMARK 3 T13: 0.0002 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.4226 L22: 0.8191 REMARK 3 L33: 0.5655 L12: -0.0403 REMARK 3 L13: 0.0482 L23: -0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: -0.0294 S13: -0.0245 REMARK 3 S21: 0.0144 S22: -0.0073 S23: 0.0137 REMARK 3 S31: -0.0315 S32: -0.0031 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 423 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1640 73.4500 47.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.2038 REMARK 3 T33: 0.1962 T12: 0.0012 REMARK 3 T13: 0.0138 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.3036 L22: 0.9259 REMARK 3 L33: 0.4600 L12: -0.1453 REMARK 3 L13: -0.0192 L23: 0.0825 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: 0.0277 S13: -0.0173 REMARK 3 S21: 0.0000 S22: -0.0369 S23: 0.0163 REMARK 3 S31: 0.0143 S32: -0.0325 S33: 0.0110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3I4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.275 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58992 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 24.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.5.0070 REMARK 200 STARTING MODEL: PDB ENTRY 3I4Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% 1,3-BUTANEDIOL, 50MM SODIUM L REMARK 280 -LACTATE, 100MM SODIUM MOPSO PH 7.0, 2MM DTT, VAPOUR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASN A 426 REMARK 465 LEU A 427 REMARK 465 SER A 428 REMARK 465 GLU A 429 REMARK 465 SER A 430 REMARK 465 LYS A 431 REMARK 465 VAL A 432 REMARK 465 LYS A 433 REMARK 465 CYS A 434 REMARK 465 GLN A 435 REMARK 465 ASP A 436 REMARK 465 ALA A 437 REMARK 465 ALA A 438 REMARK 465 CYS A 439 REMARK 465 GLN A 440 REMARK 465 PRO A 441 REMARK 465 THR A 442 REMARK 465 ALA A 443 REMARK 465 LEU A 444 REMARK 465 PRO A 445 REMARK 465 PRO A 446 REMARK 465 ASP A 447 REMARK 465 LEU A 448 REMARK 465 SER A 449 REMARK 465 LYS A 450 REMARK 465 THR A 451 REMARK 465 TYR A 455 REMARK 465 SER A 456 REMARK 465 GLY A 457 REMARK 465 LEU A 458 REMARK 465 HIS A 459 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ALA B 423 REMARK 465 VAL B 424 REMARK 465 ALA B 425 REMARK 465 ASN B 426 REMARK 465 LEU B 427 REMARK 465 SER B 428 REMARK 465 GLU B 429 REMARK 465 SER B 430 REMARK 465 LYS B 431 REMARK 465 VAL B 432 REMARK 465 LYS B 433 REMARK 465 CYS B 434 REMARK 465 GLN B 435 REMARK 465 ASP B 436 REMARK 465 ALA B 437 REMARK 465 ALA B 438 REMARK 465 CYS B 439 REMARK 465 GLN B 440 REMARK 465 PRO B 441 REMARK 465 THR B 442 REMARK 465 ALA B 443 REMARK 465 LEU B 444 REMARK 465 PRO B 445 REMARK 465 PRO B 446 REMARK 465 ASP B 447 REMARK 465 LEU B 448 REMARK 465 SER B 449 REMARK 465 LYS B 450 REMARK 465 THR B 451 REMARK 465 GLY B 452 REMARK 465 VAL B 453 REMARK 465 TYR B 454 REMARK 465 TYR B 455 REMARK 465 SER B 456 REMARK 465 GLY B 457 REMARK 465 LEU B 458 REMARK 465 HIS B 459 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS B 180 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 573 O HOH B 730 2.16 REMARK 500 O HOH A 601 O HOH A 605 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 67.14 -151.23 REMARK 500 THR A 171 122.61 -35.70 REMARK 500 ASP A 181 32.89 70.44 REMARK 500 ASN A 393 42.33 -143.93 REMARK 500 TYR A 394 6.72 -151.31 REMARK 500 PRO B 87 30.11 -95.10 REMARK 500 ASP B 115 68.93 -164.45 REMARK 500 ARG B 283 15.92 -145.23 REMARK 500 ASN B 393 37.67 -147.81 REMARK 500 ASP B 405 51.81 38.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DST A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DST B 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 461 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I4Z RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. RESIDUE SER443ALA IS A NATURAL VARIENT IN STRAIN: B5233 / ATCC REMARK 999 13073 OF DMAW_ASPFU (UNIPROTKB/SWISS-PROT Q50EL0). 2. AUTHOR CANNOT REMARK 999 CLARIFY RESIDUES A 452(GLY) TO 454(TYR) BELONG TO EITHER CHAIN A OR REMARK 999 CHAIN B. RESIDUES A 452(GLY) TO 454(TYR) WERE ASSIGNED TO CHAIN A REMARK 999 TEMPORARY. DBREF 3I4X A 1 459 UNP Q50EL0 DMAW_ASPFU 1 459 DBREF 3I4X B 1 459 UNP Q50EL0 DMAW_ASPFU 1 459 SEQADV 3I4X GLY A -5 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X SER A -4 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X HIS A -3 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X GLY A -2 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X GLY A -1 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X SER A 0 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X ALA A 443 UNP Q50EL0 SER 443 SEE REMARK 999 SEQADV 3I4X GLY B -5 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X SER B -4 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X HIS B -3 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X GLY B -2 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X GLY B -1 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X SER B 0 UNP Q50EL0 EXPRESSION TAG SEQADV 3I4X ALA B 443 UNP Q50EL0 SER 443 SEE REMARK 999 SEQRES 1 A 465 GLY SER HIS GLY GLY SER MET LYS ALA ALA ASN ALA SER SEQRES 2 A 465 SER ALA GLU ALA TYR ARG VAL LEU SER ARG ALA PHE ARG SEQRES 3 A 465 PHE ASP ASN GLU ASP GLN LYS LEU TRP TRP HIS SER THR SEQRES 4 A 465 ALA PRO MET PHE ALA LYS MET LEU GLU THR ALA ASN TYR SEQRES 5 A 465 THR THR PRO CYS GLN TYR GLN TYR LEU ILE THR TYR LYS SEQRES 6 A 465 GLU CYS VAL ILE PRO SER LEU GLY CYS TYR PRO THR ASN SEQRES 7 A 465 SER ALA PRO ARG TRP LEU SER ILE LEU THR ARG TYR GLY SEQRES 8 A 465 THR PRO PHE GLU LEU SER LEU ASN CYS SER ASN SER ILE SEQRES 9 A 465 VAL ARG TYR THR PHE GLU PRO ILE ASN GLN HIS THR GLY SEQRES 10 A 465 THR ASP LYS ASP PRO PHE ASN THR HIS ALA ILE TRP GLU SEQRES 11 A 465 SER LEU GLN HIS LEU LEU PRO LEU GLU LYS SER ILE ASP SEQRES 12 A 465 LEU GLU TRP PHE ARG HIS PHE LYS HIS ASP LEU THR LEU SEQRES 13 A 465 ASN SER GLU GLU SER ALA PHE LEU ALA HIS ASN ASP ARG SEQRES 14 A 465 LEU VAL GLY GLY THR ILE ARG THR GLN ASN LYS LEU ALA SEQRES 15 A 465 LEU ASP LEU LYS ASP GLY ARG PHE ALA LEU LYS THR TYR SEQRES 16 A 465 ILE TYR PRO ALA LEU LYS ALA VAL VAL THR GLY LYS THR SEQRES 17 A 465 ILE HIS GLU LEU VAL PHE GLY SER VAL ARG ARG LEU ALA SEQRES 18 A 465 VAL ARG GLU PRO ARG ILE LEU PRO PRO LEU ASN MET LEU SEQRES 19 A 465 GLU GLU TYR ILE ARG SER ARG GLY SER LYS SER THR ALA SEQRES 20 A 465 SER PRO ARG LEU VAL SER CYS ASP LEU THR SER PRO ALA SEQRES 21 A 465 LYS SER ARG ILE LYS ILE TYR LEU LEU GLU GLN MET VAL SEQRES 22 A 465 SER LEU GLU ALA MET GLU ASP LEU TRP THR LEU GLY GLY SEQRES 23 A 465 ARG ARG ARG ASP ALA SER THR LEU GLU GLY LEU SER LEU SEQRES 24 A 465 VAL ARG GLU LEU TRP ASP LEU ILE GLN LEU SER PRO GLY SEQRES 25 A 465 LEU LYS SER TYR PRO ALA PRO TYR LEU PRO LEU GLY VAL SEQRES 26 A 465 ILE PRO ASP GLU ARG LEU PRO LEU MET ALA ASN PHE THR SEQRES 27 A 465 LEU HIS GLN ASN ASP PRO VAL PRO GLU PRO GLN VAL TYR SEQRES 28 A 465 PHE THR THR PHE GLY MET ASN ASP MET ALA VAL ALA ASP SEQRES 29 A 465 ALA LEU THR THR PHE PHE GLU ARG ARG GLY TRP SER GLU SEQRES 30 A 465 MET ALA ARG THR TYR GLU THR THR LEU LYS SER TYR TYR SEQRES 31 A 465 PRO HIS ALA ASP HIS ASP LYS LEU ASN TYR LEU HIS ALA SEQRES 32 A 465 TYR ILE SER PHE SER TYR ARG ASP ARG THR PRO TYR LEU SEQRES 33 A 465 SER VAL TYR LEU GLN SER PHE GLU THR GLY ASP TRP ALA SEQRES 34 A 465 VAL ALA ASN LEU SER GLU SER LYS VAL LYS CYS GLN ASP SEQRES 35 A 465 ALA ALA CYS GLN PRO THR ALA LEU PRO PRO ASP LEU SER SEQRES 36 A 465 LYS THR GLY VAL TYR TYR SER GLY LEU HIS SEQRES 1 B 465 GLY SER HIS GLY GLY SER MET LYS ALA ALA ASN ALA SER SEQRES 2 B 465 SER ALA GLU ALA TYR ARG VAL LEU SER ARG ALA PHE ARG SEQRES 3 B 465 PHE ASP ASN GLU ASP GLN LYS LEU TRP TRP HIS SER THR SEQRES 4 B 465 ALA PRO MET PHE ALA LYS MET LEU GLU THR ALA ASN TYR SEQRES 5 B 465 THR THR PRO CYS GLN TYR GLN TYR LEU ILE THR TYR LYS SEQRES 6 B 465 GLU CYS VAL ILE PRO SER LEU GLY CYS TYR PRO THR ASN SEQRES 7 B 465 SER ALA PRO ARG TRP LEU SER ILE LEU THR ARG TYR GLY SEQRES 8 B 465 THR PRO PHE GLU LEU SER LEU ASN CYS SER ASN SER ILE SEQRES 9 B 465 VAL ARG TYR THR PHE GLU PRO ILE ASN GLN HIS THR GLY SEQRES 10 B 465 THR ASP LYS ASP PRO PHE ASN THR HIS ALA ILE TRP GLU SEQRES 11 B 465 SER LEU GLN HIS LEU LEU PRO LEU GLU LYS SER ILE ASP SEQRES 12 B 465 LEU GLU TRP PHE ARG HIS PHE LYS HIS ASP LEU THR LEU SEQRES 13 B 465 ASN SER GLU GLU SER ALA PHE LEU ALA HIS ASN ASP ARG SEQRES 14 B 465 LEU VAL GLY GLY THR ILE ARG THR GLN ASN LYS LEU ALA SEQRES 15 B 465 LEU ASP LEU LYS ASP GLY ARG PHE ALA LEU LYS THR TYR SEQRES 16 B 465 ILE TYR PRO ALA LEU LYS ALA VAL VAL THR GLY LYS THR SEQRES 17 B 465 ILE HIS GLU LEU VAL PHE GLY SER VAL ARG ARG LEU ALA SEQRES 18 B 465 VAL ARG GLU PRO ARG ILE LEU PRO PRO LEU ASN MET LEU SEQRES 19 B 465 GLU GLU TYR ILE ARG SER ARG GLY SER LYS SER THR ALA SEQRES 20 B 465 SER PRO ARG LEU VAL SER CYS ASP LEU THR SER PRO ALA SEQRES 21 B 465 LYS SER ARG ILE LYS ILE TYR LEU LEU GLU GLN MET VAL SEQRES 22 B 465 SER LEU GLU ALA MET GLU ASP LEU TRP THR LEU GLY GLY SEQRES 23 B 465 ARG ARG ARG ASP ALA SER THR LEU GLU GLY LEU SER LEU SEQRES 24 B 465 VAL ARG GLU LEU TRP ASP LEU ILE GLN LEU SER PRO GLY SEQRES 25 B 465 LEU LYS SER TYR PRO ALA PRO TYR LEU PRO LEU GLY VAL SEQRES 26 B 465 ILE PRO ASP GLU ARG LEU PRO LEU MET ALA ASN PHE THR SEQRES 27 B 465 LEU HIS GLN ASN ASP PRO VAL PRO GLU PRO GLN VAL TYR SEQRES 28 B 465 PHE THR THR PHE GLY MET ASN ASP MET ALA VAL ALA ASP SEQRES 29 B 465 ALA LEU THR THR PHE PHE GLU ARG ARG GLY TRP SER GLU SEQRES 30 B 465 MET ALA ARG THR TYR GLU THR THR LEU LYS SER TYR TYR SEQRES 31 B 465 PRO HIS ALA ASP HIS ASP LYS LEU ASN TYR LEU HIS ALA SEQRES 32 B 465 TYR ILE SER PHE SER TYR ARG ASP ARG THR PRO TYR LEU SEQRES 33 B 465 SER VAL TYR LEU GLN SER PHE GLU THR GLY ASP TRP ALA SEQRES 34 B 465 VAL ALA ASN LEU SER GLU SER LYS VAL LYS CYS GLN ASP SEQRES 35 B 465 ALA ALA CYS GLN PRO THR ALA LEU PRO PRO ASP LEU SER SEQRES 36 B 465 LYS THR GLY VAL TYR TYR SER GLY LEU HIS HET DST A 460 14 HET TRP A 461 15 HET GOL A 462 6 HET GOL A 463 6 HET DST B 460 14 HET TRP B 461 15 HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETNAM TRP TRYPTOPHAN HETNAM GOL GLYCEROL HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DST 2(C5 H12 O6 P2 S) FORMUL 4 TRP 2(C11 H12 N2 O2) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *585(H2 O) HELIX 1 1 ASN A 5 SER A 8 5 4 HELIX 2 2 ALA A 9 PHE A 19 1 11 HELIX 3 3 ASN A 23 ALA A 44 1 22 HELIX 4 4 THR A 47 VAL A 62 1 16 HELIX 5 5 ILE A 63 LEU A 66 5 4 HELIX 6 6 HIS A 120 LEU A 130 1 11 HELIX 7 7 PRO A 131 GLU A 133 5 3 HELIX 8 8 LEU A 138 THR A 149 1 12 HELIX 9 9 ASN A 151 ASN A 161 1 11 HELIX 10 10 ASP A 162 VAL A 165 5 4 HELIX 11 11 PRO A 192 GLY A 200 1 9 HELIX 12 12 THR A 202 GLU A 218 1 17 HELIX 13 13 ILE A 221 ARG A 235 1 15 HELIX 14 14 SER A 252 SER A 256 5 5 HELIX 15 15 SER A 268 THR A 277 1 10 HELIX 16 16 ASP A 284 GLN A 302 1 19 HELIX 17 17 ASN A 352 GLY A 368 1 17 HELIX 18 18 TRP A 369 TYR A 384 1 16 HELIX 19 19 ASP A 388 LEU A 392 5 5 HELIX 20 20 THR A 419 ALA A 425 5 7 HELIX 21 21 ASN B 5 SER B 8 5 4 HELIX 22 22 ALA B 9 PHE B 19 1 11 HELIX 23 23 ASN B 23 ALA B 44 1 22 HELIX 24 24 THR B 47 VAL B 62 1 16 HELIX 25 25 ILE B 63 LEU B 66 5 4 HELIX 26 26 HIS B 120 LEU B 130 1 11 HELIX 27 27 PRO B 131 GLU B 133 5 3 HELIX 28 28 LEU B 138 THR B 149 1 12 HELIX 29 29 ASN B 151 ASN B 161 1 11 HELIX 30 30 ASP B 162 VAL B 165 5 4 HELIX 31 31 PRO B 192 GLY B 200 1 9 HELIX 32 32 THR B 202 GLU B 218 1 17 HELIX 33 33 ILE B 221 SER B 234 1 14 HELIX 34 34 SER B 252 SER B 256 5 5 HELIX 35 35 SER B 268 THR B 277 1 10 HELIX 36 36 ASP B 284 GLN B 302 1 19 HELIX 37 37 ASN B 352 GLY B 368 1 17 HELIX 38 38 TRP B 369 TYR B 384 1 16 HELIX 39 39 ASP B 388 LEU B 392 5 5 SHEET 1 A11 PHE A 88 ASN A 93 0 SHEET 2 A11 ILE A 98 PHE A 103 -1 O ILE A 98 N ASN A 93 SHEET 3 A11 ASN A 173 LYS A 180 -1 O LEU A 175 N PHE A 103 SHEET 4 A11 ARG A 183 ILE A 190 -1 O ALA A 185 N ASP A 178 SHEET 5 A11 ALA A 241 ASP A 249 -1 O VAL A 246 N ILE A 190 SHEET 6 A11 ILE A 258 GLU A 264 -1 O LYS A 259 N SER A 247 SHEET 7 A11 LEU A 327 LEU A 333 -1 O ALA A 329 N LEU A 262 SHEET 8 A11 GLU A 341 PHE A 346 -1 O GLU A 341 N THR A 332 SHEET 9 A11 HIS A 396 ARG A 404 -1 O ILE A 399 N PHE A 346 SHEET 10 A11 THR A 407 LEU A 414 -1 O SER A 411 N SER A 400 SHEET 11 A11 PHE A 88 ASN A 93 -1 N LEU A 90 O LEU A 414 SHEET 1 B 2 MET A 266 VAL A 267 0 SHEET 2 B 2 GLY A 306 LEU A 307 -1 O GLY A 306 N VAL A 267 SHEET 1 C11 PHE B 88 ASN B 93 0 SHEET 2 C11 ILE B 98 PHE B 103 -1 O ILE B 98 N ASN B 93 SHEET 3 C11 ASN B 173 LYS B 180 -1 O LEU B 175 N PHE B 103 SHEET 4 C11 ARG B 183 ILE B 190 -1 O ALA B 185 N ASP B 178 SHEET 5 C11 ALA B 241 ASP B 249 -1 O VAL B 246 N ILE B 190 SHEET 6 C11 ILE B 258 GLU B 264 -1 O LYS B 259 N SER B 247 SHEET 7 C11 LEU B 327 LEU B 333 -1 O ALA B 329 N LEU B 262 SHEET 8 C11 GLU B 341 PHE B 346 -1 O GLN B 343 N ASN B 330 SHEET 9 C11 HIS B 396 ARG B 404 -1 O ILE B 399 N PHE B 346 SHEET 10 C11 THR B 407 LEU B 414 -1 O TYR B 413 N TYR B 398 SHEET 11 C11 PHE B 88 ASN B 93 -1 N LEU B 92 O VAL B 412 SHEET 1 D 2 MET B 266 VAL B 267 0 SHEET 2 D 2 GLY B 306 LEU B 307 -1 O GLY B 306 N VAL B 267 SITE 1 AC1 17 ARG A 100 LYS A 187 TYR A 189 ARG A 257 SITE 2 AC1 17 LYS A 259 TYR A 261 MET A 328 GLN A 343 SITE 3 AC1 17 TYR A 345 ARG A 404 TYR A 409 TYR A 413 SITE 4 AC1 17 TRP A 461 HOH A 588 HOH A 621 HOH A 627 SITE 5 AC1 17 HOH A 635 SITE 1 AC2 12 ILE A 80 LEU A 81 GLU A 89 THR A 102 SITE 2 AC2 12 LYS A 174 TYR A 189 TYR A 191 ARG A 244 SITE 3 AC2 12 MET A 328 TYR A 398 DST A 460 HOH A 540 SITE 1 AC3 6 VAL A 319 ILE A 320 ASP A 322 GLU A 323 SITE 2 AC3 6 HOH A 728 TYR B 314 SITE 1 AC4 10 THR A 119 HIS A 120 TRP A 123 LYS A 145 SITE 2 AC4 10 THR A 149 LEU A 150 ASP A 405 HOH A 504 SITE 3 AC4 10 HOH A 572 HOH A 752 SITE 1 AC5 17 ARG B 100 LYS B 187 TYR B 189 ARG B 257 SITE 2 AC5 17 LYS B 259 TYR B 261 MET B 328 GLN B 343 SITE 3 AC5 17 TYR B 345 ARG B 404 TYR B 409 TYR B 413 SITE 4 AC5 17 TRP B 461 HOH B 575 HOH B 680 HOH B 683 SITE 5 AC5 17 HOH B 720 SITE 1 AC6 11 ILE B 80 LEU B 81 GLU B 89 THR B 102 SITE 2 AC6 11 LYS B 174 TYR B 189 TYR B 191 ARG B 244 SITE 3 AC6 11 TYR B 398 DST B 460 HOH B 467 CRYST1 79.070 97.850 125.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007988 0.00000