HEADER OXIDOREDUCTASE 06-JUL-09 3I5M TITLE STRUCTURE OF THE APO FORM OF LEUCOANTHOCYANIDIN REDUCTASE FROM VITIS TITLE 2 VINIFERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LEUCOANTHOCYANIDIN REDUCTASE 1; COMPND 3 CHAIN: A; COMPND 4 EC: 1.17.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITIS VINIFERA; SOURCE 3 ORGANISM_COMMON: WINE GRAPE; SOURCE 4 ORGANISM_TAXID: 29760; SOURCE 5 GENE: LAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETGB1A KEYWDS ROSSMANN FOLD, SHORT CHAIN DEHYDROGENASE REDUCTASE, FLAVONOID, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MAUGE,M.GARGOURI,B.L.D'ESTAINTOT,T.GRANIER,B.GALLOIS REVDAT 4 01-NOV-23 3I5M 1 REMARK REVDAT 3 20-NOV-13 3I5M 1 JRNL REVDAT 2 13-JUL-11 3I5M 1 VERSN REVDAT 1 23-FEB-10 3I5M 0 JRNL AUTH C.MAUGE,T.GRANIER,B.L.D'ESTAINTOT,M.GARGOURI,C.MANIGAND, JRNL AUTH 2 J.M.SCHMITTER,J.CHAUDIERE,B.GALLOIS JRNL TITL CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF JRNL TITL 2 LEUCOANTHOCYANIDIN REDUCTASE FROM VITIS VINIFERA. JRNL REF J.MOL.BIOL. V. 397 1079 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20138891 JRNL DOI 10.1016/J.JMB.2010.02.002 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 7060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 506 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 44.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.73000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.386 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.409 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2330 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3171 ; 1.332 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 5.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;33.808 ;23.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;15.274 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1780 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 0.439 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 0.862 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 834 ; 1.410 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 754 ; 2.392 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1390 10.6910 21.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.1691 REMARK 3 T33: 0.1403 T12: -0.0037 REMARK 3 T13: 0.0164 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.3975 L22: 3.4397 REMARK 3 L33: 3.9581 L12: 0.1631 REMARK 3 L13: 0.6069 L23: -0.5627 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.5326 S13: 0.3379 REMARK 3 S21: 0.6410 S22: -0.0295 S23: 0.1096 REMARK 3 S31: -0.3428 S32: -0.0528 S33: 0.0628 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7660 3.6370 8.2920 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0661 REMARK 3 T33: 0.0996 T12: 0.0260 REMARK 3 T13: -0.0119 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.8078 L22: 3.2770 REMARK 3 L33: 1.2495 L12: 0.5532 REMARK 3 L13: 0.8136 L23: -0.3972 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: -0.0454 S13: 0.0286 REMARK 3 S21: 0.1400 S22: 0.0132 S23: 0.3077 REMARK 3 S31: 0.0021 S32: -0.1814 S33: -0.1090 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0720 -8.4300 11.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0370 REMARK 3 T33: 0.0653 T12: 0.0070 REMARK 3 T13: 0.0237 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 4.3030 L22: 1.2262 REMARK 3 L33: 0.8290 L12: 0.7412 REMARK 3 L13: 0.6246 L23: -0.1919 REMARK 3 S TENSOR REMARK 3 S11: -0.0724 S12: -0.1999 S13: -0.1196 REMARK 3 S21: 0.1569 S22: 0.0279 S23: 0.1178 REMARK 3 S31: -0.0402 S32: -0.1036 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1970 -14.2790 24.4160 REMARK 3 T TENSOR REMARK 3 T11: 0.2948 T22: 0.3533 REMARK 3 T33: 0.4006 T12: -0.0705 REMARK 3 T13: 0.0220 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 9.9345 L22: 4.6138 REMARK 3 L33: 6.3020 L12: -0.4534 REMARK 3 L13: -2.3019 L23: 0.1772 REMARK 3 S TENSOR REMARK 3 S11: 0.3213 S12: -1.5869 S13: 0.6676 REMARK 3 S21: 0.6440 S22: -0.3041 S23: -0.0705 REMARK 3 S31: -0.3403 S32: -0.1002 S33: -0.0173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : PT COATED MIRRORS IN A REMARK 200 KIRKPATRICK-BAEZ (KB) GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 66.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3I52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 35%, SODIUM ACETATE 340MM, REMARK 280 TRIS 0.1M, SODIUM AZIDE 3MM, GLYCEROL 3.5%, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.35750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 465 ILE A 171 REMARK 465 HIS A 172 REMARK 465 PRO A 173 REMARK 465 SER A 174 REMARK 465 GLU A 175 REMARK 465 MET A 318 REMARK 465 GLU A 319 REMARK 465 GLU A 320 REMARK 465 LYS A 321 REMARK 465 GLN A 322 REMARK 465 PRO A 323 REMARK 465 THR A 324 REMARK 465 ALA A 325 REMARK 465 ASP A 326 REMARK 465 SER A 327 REMARK 465 ALA A 328 REMARK 465 ILE A 329 REMARK 465 ALA A 330 REMARK 465 ASN A 331 REMARK 465 THR A 332 REMARK 465 GLY A 333 REMARK 465 PRO A 334 REMARK 465 VAL A 335 REMARK 465 VAL A 336 REMARK 465 GLY A 337 REMARK 465 MET A 338 REMARK 465 ARG A 339 REMARK 465 GLN A 340 REMARK 465 VAL A 341 REMARK 465 THR A 342 REMARK 465 ALA A 343 REMARK 465 THR A 344 REMARK 465 CYS A 345 REMARK 465 ALA A 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 24 OE1 NE2 REMARK 470 PRO A 45 CB CG CD REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 55 CB CG CD CE NZ REMARK 470 GLU A 58 CD OE1 OE2 REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 LYS A 60 CE NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 77 CD CE NZ REMARK 470 LYS A 80 CE NZ REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 LYS A 104 CE NZ REMARK 470 ASN A 170 C O CB CG OD1 ND2 REMARK 470 VAL A 176 CB CG1 CG2 REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 LYS A 207 NZ REMARK 470 ILE A 230 CD1 REMARK 470 LYS A 239 CD CE NZ REMARK 470 ASP A 288 CG OD1 OD2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 GLU A 308 CD OE1 OE2 REMARK 470 ILE A 315 CG2 CD1 REMARK 470 LYS A 317 C O CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 119 -75.02 -108.03 REMARK 500 CYS A 158 74.98 -100.80 REMARK 500 ASN A 160 -135.80 57.57 REMARK 500 ASP A 181 -61.72 -109.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I52 RELATED DB: PDB REMARK 900 TERNARY COMPLEX STRUCTURE OF LEUCOANTHOCYANIDIN REDUCTASE FROM REMARK 900 VITIS VINIFERA REMARK 900 RELATED ID: 3I6I RELATED DB: PDB DBREF 3I5M A 1 346 UNP Q4W2K4 Q4W2K4_VITVI 1 346 SEQRES 1 A 346 MET THR VAL SER PRO VAL PRO SER PRO LYS GLY ARG VAL SEQRES 2 A 346 LEU ILE ALA GLY ALA THR GLY PHE ILE GLY GLN PHE VAL SEQRES 3 A 346 ALA THR ALA SER LEU ASP ALA HIS ARG PRO THR TYR ILE SEQRES 4 A 346 LEU ALA ARG PRO GLY PRO ARG SER PRO SER LYS ALA LYS SEQRES 5 A 346 ILE PHE LYS ALA LEU GLU ASP LYS GLY ALA ILE ILE VAL SEQRES 6 A 346 TYR GLY LEU ILE ASN GLU GLN GLU ALA MET GLU LYS ILE SEQRES 7 A 346 LEU LYS GLU HIS GLU ILE ASP ILE VAL VAL SER THR VAL SEQRES 8 A 346 GLY GLY GLU SER ILE LEU ASP GLN ILE ALA LEU VAL LYS SEQRES 9 A 346 ALA MET LYS ALA VAL GLY THR ILE LYS ARG PHE LEU PRO SEQRES 10 A 346 SER GLU PHE GLY HIS ASP VAL ASN ARG ALA ASP PRO VAL SEQRES 11 A 346 GLU PRO GLY LEU ASN MET TYR ARG GLU LYS ARG ARG VAL SEQRES 12 A 346 ARG GLN LEU VAL GLU GLU SER GLY ILE PRO PHE THR TYR SEQRES 13 A 346 ILE CYS CYS ASN SER ILE ALA SER TRP PRO TYR TYR ASN SEQRES 14 A 346 ASN ILE HIS PRO SER GLU VAL LEU PRO PRO THR ASP PHE SEQRES 15 A 346 PHE GLN ILE TYR GLY ASP GLY ASN VAL LYS ALA TYR PHE SEQRES 16 A 346 VAL ALA GLY THR ASP ILE GLY LYS PHE THR MET LYS THR SEQRES 17 A 346 VAL ASP ASP VAL ARG THR LEU ASN LYS SER VAL HIS PHE SEQRES 18 A 346 ARG PRO SER CYS ASN CYS LEU ASN ILE ASN GLU LEU ALA SEQRES 19 A 346 SER VAL TRP GLU LYS LYS ILE GLY ARG THR LEU PRO ARG SEQRES 20 A 346 VAL THR VAL THR GLU ASP ASP LEU LEU ALA ALA ALA GLY SEQRES 21 A 346 GLU ASN ILE ILE PRO GLN SER VAL VAL ALA ALA PHE THR SEQRES 22 A 346 HIS ASP ILE PHE ILE LYS GLY CYS GLN VAL ASN PHE SER SEQRES 23 A 346 ILE ASP GLY PRO GLU ASP VAL GLU VAL THR THR LEU TYR SEQRES 24 A 346 PRO GLU ASP SER PHE ARG THR VAL GLU GLU CYS PHE GLY SEQRES 25 A 346 GLU TYR ILE VAL LYS MET GLU GLU LYS GLN PRO THR ALA SEQRES 26 A 346 ASP SER ALA ILE ALA ASN THR GLY PRO VAL VAL GLY MET SEQRES 27 A 346 ARG GLN VAL THR ALA THR CYS ALA FORMUL 2 HOH *47(H2 O) HELIX 1 1 GLY A 20 ALA A 33 1 14 HELIX 2 2 SER A 47 LYS A 60 1 14 HELIX 3 3 GLU A 71 GLU A 83 1 13 HELIX 4 4 SER A 95 LEU A 97 5 3 HELIX 5 5 ASP A 98 GLY A 110 1 13 HELIX 6 6 PRO A 132 SER A 150 1 19 HELIX 7 7 ALA A 197 VAL A 209 1 13 HELIX 8 8 ASP A 210 LEU A 215 5 6 HELIX 9 9 PRO A 223 CYS A 225 5 3 HELIX 10 10 ASN A 229 GLY A 242 1 14 HELIX 11 11 THR A 251 GLY A 260 1 10 HELIX 12 12 PRO A 265 ILE A 278 1 14 HELIX 13 13 VAL A 295 TYR A 299 1 5 HELIX 14 14 THR A 306 ILE A 315 1 10 SHEET 1 A 5 ILE A 63 TYR A 66 0 SHEET 2 A 5 THR A 37 ALA A 41 1 N ILE A 39 O ILE A 63 SHEET 3 A 5 VAL A 13 ALA A 16 1 N VAL A 13 O TYR A 38 SHEET 4 A 5 ILE A 86 SER A 89 1 O VAL A 88 N LEU A 14 SHEET 5 A 5 ARG A 114 LEU A 116 1 O LEU A 116 N VAL A 87 SHEET 1 B 3 THR A 155 CYS A 158 0 SHEET 2 B 3 LYS A 217 HIS A 220 1 O VAL A 219 N TYR A 156 SHEET 3 B 3 ASP A 292 GLU A 294 1 O VAL A 293 N HIS A 220 SHEET 1 C 3 SER A 161 ILE A 162 0 SHEET 2 C 3 ALA A 193 VAL A 196 1 O VAL A 196 N SER A 161 SHEET 3 C 3 CYS A 227 LEU A 228 -1 O LEU A 228 N ALA A 193 SHEET 1 D 2 PHE A 183 TYR A 186 0 SHEET 2 D 2 ARG A 247 VAL A 250 1 O VAL A 248 N PHE A 183 CISPEP 1 GLU A 131 PRO A 132 0 4.74 CISPEP 2 ILE A 264 PRO A 265 0 4.51 CRYST1 45.421 50.715 68.051 90.00 103.18 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022016 0.000000 0.005156 0.00000 SCALE2 0.000000 0.019718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015092 0.00000