HEADER OXIDOREDUCTASE 07-JUL-09 3I6Q TITLE STRUCTURE OF THE BINARY COMPLEX LEUCOANTHOCYANIDIN REDUCTASE-NADPH TITLE 2 FROM VITIS VINIFERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LEUCOANTHOCYANIDIN REDUCTASE 1; COMPND 3 CHAIN: A; COMPND 4 EC: 1.17.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITIS VINIFERA; SOURCE 3 ORGANISM_COMMON: WINE GRAPE; SOURCE 4 ORGANISM_TAXID: 29760; SOURCE 5 GENE: LAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETGB1A KEYWDS ROSSMANN FOLD, SHORT CHAIN DEHYDROGENASE REDUCTASE, FLAVONOID, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MAUGE,M.GARGOURI,B.L.D'ESTAINTOT,T.GRANIER,B.GALLOIS REVDAT 4 01-NOV-23 3I6Q 1 REMARK REVDAT 3 20-NOV-13 3I6Q 1 JRNL REVDAT 2 13-JUL-11 3I6Q 1 VERSN REVDAT 1 23-FEB-10 3I6Q 0 JRNL AUTH C.MAUGE,T.GRANIER,B.L.D'ESTAINTOT,M.GARGOURI,C.MANIGAND, JRNL AUTH 2 J.M.SCHMITTER,J.CHAUDIERE,B.GALLOIS JRNL TITL CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF JRNL TITL 2 LEUCOANTHOCYANIDIN REDUCTASE FROM VITIS VINIFERA. JRNL REF J.MOL.BIOL. V. 397 1079 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20138891 JRNL DOI 10.1016/J.JMB.2010.02.002 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1278 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.641 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2348 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3202 ; 1.441 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;33.117 ;24.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;13.041 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.219 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1761 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1458 ; 2.232 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2363 ; 3.344 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 890 ; 3.804 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 839 ; 5.261 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7120 11.1380 21.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.2167 REMARK 3 T33: 0.1649 T12: 0.0500 REMARK 3 T13: -0.0825 T23: -0.1726 REMARK 3 L TENSOR REMARK 3 L11: 0.8824 L22: 1.6512 REMARK 3 L33: 1.0121 L12: -0.2652 REMARK 3 L13: -0.4039 L23: -0.3762 REMARK 3 S TENSOR REMARK 3 S11: -0.1516 S12: -0.3709 S13: 0.3544 REMARK 3 S21: 0.4098 S22: 0.1881 S23: -0.1421 REMARK 3 S31: -0.1007 S32: -0.0049 S33: -0.0366 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5410 2.9480 8.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1192 REMARK 3 T33: 0.1569 T12: -0.0022 REMARK 3 T13: 0.0187 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.1248 L22: 0.6991 REMARK 3 L33: 0.0524 L12: -0.0299 REMARK 3 L13: -0.1877 L23: -0.1143 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.1497 S13: 0.0913 REMARK 3 S21: 0.0999 S22: 0.0289 S23: 0.0393 REMARK 3 S31: -0.0127 S32: 0.0180 S33: -0.0120 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5690 -8.3060 11.5620 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1101 REMARK 3 T33: 0.1386 T12: -0.0043 REMARK 3 T13: 0.0398 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 2.1222 L22: 0.6920 REMARK 3 L33: 0.0367 L12: 0.0421 REMARK 3 L13: 0.1796 L23: -0.0693 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: -0.1680 S13: -0.1590 REMARK 3 S21: 0.1298 S22: 0.0285 S23: 0.1003 REMARK 3 S31: -0.0145 S32: 0.0176 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5460 -13.4950 24.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.2966 T22: 0.2958 REMARK 3 T33: 0.1640 T12: -0.0184 REMARK 3 T13: 0.0207 T23: 0.1648 REMARK 3 L TENSOR REMARK 3 L11: 14.5056 L22: 0.0211 REMARK 3 L33: 1.9710 L12: 0.0174 REMARK 3 L13: -4.3632 L23: 0.0662 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: -1.2778 S13: -0.1408 REMARK 3 S21: 0.0481 S22: -0.0457 S23: -0.0425 REMARK 3 S31: 0.0816 S32: 0.1095 S33: -0.0898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMAND (1,1,1), GE (2,2,0) REMARK 200 OPTICS : DIAMAND (1,1,1), GE (2,2,0) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 40.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2QX7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 31%, TRIS-HCL 0.1M, SODIUM REMARK 280 ACETATE 0.2M, GLYCEROL 2.5%, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.44700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 43 REMARK 465 GLY A 44 REMARK 465 PRO A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 PRO A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 ALA A 51 REMARK 465 LYS A 52 REMARK 465 ILE A 53 REMARK 465 ILE A 171 REMARK 465 HIS A 172 REMARK 465 PRO A 173 REMARK 465 SER A 174 REMARK 465 GLU A 175 REMARK 465 MET A 318 REMARK 465 GLU A 319 REMARK 465 GLU A 320 REMARK 465 LYS A 321 REMARK 465 GLN A 322 REMARK 465 PRO A 323 REMARK 465 THR A 324 REMARK 465 ALA A 325 REMARK 465 ASP A 326 REMARK 465 SER A 327 REMARK 465 ALA A 328 REMARK 465 ILE A 329 REMARK 465 ALA A 330 REMARK 465 ASN A 331 REMARK 465 THR A 332 REMARK 465 GLY A 333 REMARK 465 PRO A 334 REMARK 465 VAL A 335 REMARK 465 VAL A 336 REMARK 465 GLY A 337 REMARK 465 MET A 338 REMARK 465 ARG A 339 REMARK 465 GLN A 340 REMARK 465 VAL A 341 REMARK 465 THR A 342 REMARK 465 ALA A 343 REMARK 465 THR A 344 REMARK 465 CYS A 345 REMARK 465 ALA A 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 24 OE1 NE2 REMARK 470 ARG A 42 CZ NH1 NH2 REMARK 470 PHE A 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 55 CB CG CD CE NZ REMARK 470 LEU A 57 CB CG CD1 CD2 REMARK 470 LYS A 77 NZ REMARK 470 LYS A 80 CE NZ REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 LYS A 104 CE NZ REMARK 470 VAL A 176 N CB CG1 CG2 REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 ASN A 190 ND2 REMARK 470 ILE A 230 CD1 REMARK 470 LYS A 239 CE NZ REMARK 470 ILE A 241 CD1 REMARK 470 ASP A 288 CG OD1 OD2 REMARK 470 GLU A 308 CD OE1 OE2 REMARK 470 ILE A 315 CG2 CD1 REMARK 470 LYS A 317 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 119 -73.70 -113.80 REMARK 500 ASN A 160 -133.67 55.62 REMARK 500 ASP A 181 -65.32 -106.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 360 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I52 RELATED DB: PDB REMARK 900 TERNARY COMPLEX STRUCTURE OF LEUCOANTHOCYANIDIN REDUCTASE FROM REMARK 900 VITIS VINIFERA REMARK 900 RELATED ID: 3I5M RELATED DB: PDB REMARK 900 STRUCTURE OF THE APO FORM OF LEUCOANTHOCYANIDIN REDUCTASE FROM REMARK 900 VITIS VINIFERA REMARK 900 RELATED ID: 3I6I RELATED DB: PDB REMARK 900 STRUCTURE OF THE BINARY COMPLEX LEUCOANTHOCYANIDIN REDUCTASE-NADPH REMARK 900 FROM VITIS VINIFERA DBREF 3I6Q A 1 346 UNP Q4W2K4 Q4W2K4_VITVI 1 346 SEQRES 1 A 346 MET THR VAL SER PRO VAL PRO SER PRO LYS GLY ARG VAL SEQRES 2 A 346 LEU ILE ALA GLY ALA THR GLY PHE ILE GLY GLN PHE VAL SEQRES 3 A 346 ALA THR ALA SER LEU ASP ALA HIS ARG PRO THR TYR ILE SEQRES 4 A 346 LEU ALA ARG PRO GLY PRO ARG SER PRO SER LYS ALA LYS SEQRES 5 A 346 ILE PHE LYS ALA LEU GLU ASP LYS GLY ALA ILE ILE VAL SEQRES 6 A 346 TYR GLY LEU ILE ASN GLU GLN GLU ALA MET GLU LYS ILE SEQRES 7 A 346 LEU LYS GLU HIS GLU ILE ASP ILE VAL VAL SER THR VAL SEQRES 8 A 346 GLY GLY GLU SER ILE LEU ASP GLN ILE ALA LEU VAL LYS SEQRES 9 A 346 ALA MET LYS ALA VAL GLY THR ILE LYS ARG PHE LEU PRO SEQRES 10 A 346 SER GLU PHE GLY HIS ASP VAL ASN ARG ALA ASP PRO VAL SEQRES 11 A 346 GLU PRO GLY LEU ASN MET TYR ARG GLU LYS ARG ARG VAL SEQRES 12 A 346 ARG GLN LEU VAL GLU GLU SER GLY ILE PRO PHE THR TYR SEQRES 13 A 346 ILE CYS CYS ASN SER ILE ALA SER TRP PRO TYR TYR ASN SEQRES 14 A 346 ASN ILE HIS PRO SER GLU VAL LEU PRO PRO THR ASP PHE SEQRES 15 A 346 PHE GLN ILE TYR GLY ASP GLY ASN VAL LYS ALA TYR PHE SEQRES 16 A 346 VAL ALA GLY THR ASP ILE GLY LYS PHE THR MET LYS THR SEQRES 17 A 346 VAL ASP ASP VAL ARG THR LEU ASN LYS SER VAL HIS PHE SEQRES 18 A 346 ARG PRO SER CYS ASN CYS LEU ASN ILE ASN GLU LEU ALA SEQRES 19 A 346 SER VAL TRP GLU LYS LYS ILE GLY ARG THR LEU PRO ARG SEQRES 20 A 346 VAL THR VAL THR GLU ASP ASP LEU LEU ALA ALA ALA GLY SEQRES 21 A 346 GLU ASN ILE ILE PRO GLN SER VAL VAL ALA ALA PHE THR SEQRES 22 A 346 HIS ASP ILE PHE ILE LYS GLY CYS GLN VAL ASN PHE SER SEQRES 23 A 346 ILE ASP GLY PRO GLU ASP VAL GLU VAL THR THR LEU TYR SEQRES 24 A 346 PRO GLU ASP SER PHE ARG THR VAL GLU GLU CYS PHE GLY SEQRES 25 A 346 GLU TYR ILE VAL LYS MET GLU GLU LYS GLN PRO THR ALA SEQRES 26 A 346 ASP SER ALA ILE ALA ASN THR GLY PRO VAL VAL GLY MET SEQRES 27 A 346 ARG GLN VAL THR ALA THR CYS ALA HET NDP A 360 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 HOH *220(H2 O) HELIX 1 1 GLY A 20 ALA A 33 1 14 HELIX 2 2 PHE A 54 LYS A 60 1 7 HELIX 3 3 GLU A 71 HIS A 82 1 12 HELIX 4 4 GLY A 92 LEU A 97 5 6 HELIX 5 5 ASP A 98 GLY A 110 1 13 HELIX 6 6 PRO A 132 SER A 150 1 19 HELIX 7 7 ALA A 197 VAL A 209 1 13 HELIX 8 8 ASP A 210 LEU A 215 5 6 HELIX 9 9 PRO A 223 CYS A 225 5 3 HELIX 10 10 ASN A 229 GLY A 242 1 14 HELIX 11 11 THR A 251 GLU A 261 1 11 HELIX 12 12 PRO A 265 ILE A 278 1 14 HELIX 13 13 VAL A 295 TYR A 299 1 5 HELIX 14 14 THR A 306 ILE A 315 1 10 SHEET 1 A 5 ILE A 63 TYR A 66 0 SHEET 2 A 5 THR A 37 ALA A 41 1 N ALA A 41 O VAL A 65 SHEET 3 A 5 VAL A 13 ALA A 16 1 N VAL A 13 O TYR A 38 SHEET 4 A 5 ILE A 86 SER A 89 1 O VAL A 88 N LEU A 14 SHEET 5 A 5 ARG A 114 LEU A 116 1 O LEU A 116 N SER A 89 SHEET 1 B 3 THR A 155 CYS A 158 0 SHEET 2 B 3 LYS A 217 HIS A 220 1 O VAL A 219 N TYR A 156 SHEET 3 B 3 ASP A 292 GLU A 294 1 O VAL A 293 N HIS A 220 SHEET 1 C 3 SER A 161 ILE A 162 0 SHEET 2 C 3 ALA A 193 VAL A 196 1 O VAL A 196 N SER A 161 SHEET 3 C 3 CYS A 227 LEU A 228 -1 O LEU A 228 N ALA A 193 SHEET 1 D 2 PHE A 183 TYR A 186 0 SHEET 2 D 2 ARG A 247 VAL A 250 1 O VAL A 248 N ILE A 185 CISPEP 1 GLU A 131 PRO A 132 0 2.62 CISPEP 2 ILE A 264 PRO A 265 0 3.17 SITE 1 AC1 24 GLY A 17 THR A 19 GLY A 20 PHE A 21 SITE 2 AC1 24 ILE A 22 ARG A 42 LEU A 68 ILE A 69 SITE 3 AC1 24 ASN A 70 THR A 90 VAL A 91 GLY A 92 SITE 4 AC1 24 ASP A 98 SER A 118 PHE A 120 LYS A 140 SITE 5 AC1 24 ASN A 160 ILE A 162 HOH A 361 HOH A 432 SITE 6 AC1 24 HOH A 459 HOH A 497 HOH A 527 HOH A 577 CRYST1 45.866 50.894 68.935 90.00 102.26 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021803 0.000000 0.004738 0.00000 SCALE2 0.000000 0.019649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014845 0.00000