HEADER HYDROLASE 08-JUL-09 3I77 TITLE 35/99/170-LOOPS OF FXA IN SGT CAVEAT 3I77 DISTORED PEPTIDE BONDS A77-A79, A125-A128, A146-A148 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SGT; COMPND 5 EC: 3.4.21.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: 35/99/170-LOOPS OF FXA IN SGT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GRISEUS; SOURCE 3 ORGANISM_TAXID: 1911; SOURCE 4 GENE: SPRT; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: WB700; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PWB980 KEYWDS BETA SHEETS, SERINE PROTEASE, HYDROLASE, DISULFIDE BOND, PROTEASE, KEYWDS 2 ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.PAGE,E.DI CERA REVDAT 2 06-SEP-23 3I77 1 REMARK LINK REVDAT 1 02-JUN-10 3I77 0 JRNL AUTH M.J.PAGE,E.DI CERA JRNL TITL COMBINATORIAL ENZYME DESIGN PROBES ALLOSTERY AND JRNL TITL 2 COOPERATIVITY IN THE TRYPSIN FOLD. JRNL REF J.MOL.BIOL. V. 399 306 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20399789 JRNL DOI 10.1016/J.JMB.2010.04.024 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 21801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1180 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1575 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1735 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2352 ; 1.431 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 6.674 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;29.892 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 257 ;13.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.734 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 263 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1310 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1128 ; 0.771 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1788 ; 1.489 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 607 ; 2.633 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 564 ; 4.243 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21801 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 35.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OS8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 10 MM CALCIUM REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.17550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.70100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 69.17550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 40.70100 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.17550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 40.70100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 69.17550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 40.70100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.17550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.70100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.17550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 40.70100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 69.17550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 40.70100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.17550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.17550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 40.70100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 745 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 73 C GLN A 75 N 0.157 REMARK 500 SER A 77 C SER A 79 N 0.303 REMARK 500 ASN A 113 C GLN A 118 N 0.262 REMARK 500 THR A 125 C THR A 128 N 0.267 REMARK 500 GLU A 146 C GLY A 148 N 0.303 REMARK 500 TYR A 217 C GLY A 219 N 0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 77 O - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 TYR A 217 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 GLY A 219 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 124.87 -38.27 REMARK 500 ASN A 132 49.66 -80.95 REMARK 500 SER A 214 -66.12 -122.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 77 -12.65 REMARK 500 ASN A 113 13.58 REMARK 500 TYR A 217 12.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 OD1 REMARK 620 2 ASP A 165 OD2 49.2 REMARK 620 3 ALA A 177A O 84.5 101.2 REMARK 620 4 MET A 180 O 124.3 81.5 81.4 REMARK 620 5 GLU A 230 OE2 155.7 155.2 87.3 76.7 REMARK 620 6 HOH A 493 O 88.0 79.0 169.6 108.9 96.8 REMARK 620 7 HOH A 507 O 83.1 129.9 85.8 148.0 73.5 86.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I78 RELATED DB: PDB REMARK 900 35/99/170/186/220-LOOPS OF FXA IN SGT REMARK 900 RELATED ID: 1OS8 RELATED DB: PDB REMARK 900 WILD-TYPE SGT REMARK 900 RELATED ID: 2FMJ RELATED DB: PDB REMARK 900 220-LOOP OF FXA IN SGT REMARK 900 RELATED ID: 3BEU RELATED DB: PDB REMARK 900 99/170/186/220-LOOPS OF FXA IN SGT REMARK 999 REMARK 999 SEQUENCE REMARK 999 19 SUBSTITUTIONS IN THE 35, 99 AND 170-LOOPS DBREF 3I77 A 16 245 UNP P00775 TRYP_STRGR 37 259 SEQADV 3I77 ILE A 34 UNP P00775 SEE REMARK 999 SEQADV 3I77 ASN A 35 UNP P00775 SEE REMARK 999 SEQADV 3I77 GLU A 36 UNP P00775 SEE REMARK 999 SEQADV 3I77 GLU A 37 UNP P00775 SEE REMARK 999 SEQADV 3I77 ASN A 38 UNP P00775 SER 55 SEE REMARK 999 SEQADV 3I77 GLU A 39 UNP P00775 MET 56 SEE REMARK 999 SEQADV 3I77 PHE A 41 UNP P00775 SEE REMARK 999 SEQADV 3I77 PHE A 94 UNP P00775 SEE REMARK 999 SEQADV 3I77 THR A 95 UNP P00775 TYR 112 SEE REMARK 999 SEQADV 3I77 LYS A 96 UNP P00775 ASN 113 SEE REMARK 999 SEQADV 3I77 GLU A 97 UNP P00775 GLY 114 SEE REMARK 999 SEQADV 3I77 TYR A 99 UNP P00775 SEE REMARK 999 SEQADV 3I77 SER A 171 UNP P00775 ALA 180 SEE REMARK 999 SEQADV 3I77 SER A 172 UNP P00775 TYR 181 SEE REMARK 999 SEQADV 3I77 SER A 173 UNP P00775 GLY 182 SEE REMARK 999 SEQADV 3I77 PHE A 174 UNP P00775 ASN 183 SEE REMARK 999 SEQADV 3I77 ILE A 175 UNP P00775 GLU 184 SEE REMARK 999 SEQADV 3I77 MET A 180 UNP P00775 GLU 190 SEE REMARK 999 SEQRES 1 A 230 VAL VAL GLY GLY THR ARG ALA ALA GLN GLY GLU PHE PRO SEQRES 2 A 230 PHE MET VAL ARG LEU ILE ASN GLU GLU ASN GLU GLY PHE SEQRES 3 A 230 CYS GLY GLY ALA LEU TYR ALA GLN ASP ILE VAL LEU THR SEQRES 4 A 230 ALA ALA HIS CYS VAL SER GLY SER GLY ASN ASN THR SER SEQRES 5 A 230 ILE THR ALA THR GLY GLY VAL VAL ASP LEU GLN SER SER SEQRES 6 A 230 SER ALA VAL LYS VAL ARG SER THR LYS VAL LEU GLN ALA SEQRES 7 A 230 PRO GLY PHE THR LYS GLU THR TYR GLY LYS ASP TRP ALA SEQRES 8 A 230 LEU ILE LYS LEU ALA GLN PRO ILE ASN GLN PRO THR LEU SEQRES 9 A 230 LYS ILE ALA THR THR THR ALA TYR ASN GLN GLY THR PHE SEQRES 10 A 230 THR VAL ALA GLY TRP GLY ALA ASN ARG GLU GLY GLY SER SEQRES 11 A 230 GLN GLN ARG TYR LEU LEU LYS ALA ASN VAL PRO PHE VAL SEQRES 12 A 230 SER ASP ALA ALA CYS ARG SER SER SER SER PHE ILE LEU SEQRES 13 A 230 VAL ALA ASN GLU MET ILE CYS ALA GLY TYR PRO ASP THR SEQRES 14 A 230 GLY GLY VAL ASP THR CYS GLN GLY ASP SER GLY GLY PRO SEQRES 15 A 230 MET PHE ARG LYS ASP ASN ALA ASP GLU TRP ILE GLN VAL SEQRES 16 A 230 GLY ILE VAL SER TRP GLY TYR GLY CYS ALA ARG PRO GLY SEQRES 17 A 230 TYR PRO GLY VAL TYR THR GLU VAL SER THR PHE ALA SER SEQRES 18 A 230 ALA ILE ALA SER ALA ALA ARG THR LEU HET CA A 301 1 HET SO4 A 302 5 HET SO4 A 303 5 HET ACT A 304 4 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 2 CA CA 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *296(H2 O) HELIX 1 1 ALA A 55 VAL A 59 5 5 HELIX 2 2 LYS A 96 GLY A 100 5 5 HELIX 3 3 THR A 128 ASN A 132 5 5 HELIX 4 4 SER A 164 SER A 173 1 10 HELIX 5 5 VAL A 177 ASN A 178 5 3 HELIX 6 6 VAL A 231 THR A 244 1 14 SHEET 1 A 6 THR A 20 ARG A 21 0 SHEET 2 A 6 LEU A 156 VAL A 163 -1 O LYS A 157 N THR A 20 SHEET 3 A 6 THR A 135 GLY A 140 -1 N GLY A 140 O LEU A 156 SHEET 4 A 6 PRO A 198 LYS A 202 -1 O PHE A 200 N THR A 137 SHEET 5 A 6 TRP A 207 TRP A 215 -1 O ILE A 208 N ARG A 201 SHEET 6 A 6 LYS A 122 ILE A 123 1 N LYS A 122 O GLN A 209 SHEET 1 B 6 THR A 20 ARG A 21 0 SHEET 2 B 6 LEU A 156 VAL A 163 -1 O LYS A 157 N THR A 20 SHEET 3 B 6 MET A 180 ALA A 183 -1 O CYS A 182 N VAL A 163 SHEET 4 B 6 GLY A 226 GLU A 230 -1 O TYR A 228 N ILE A 181 SHEET 5 B 6 TRP A 207 TRP A 215 -1 N TRP A 215 O VAL A 227 SHEET 6 B 6 LYS A 122 ILE A 123 1 N LYS A 122 O GLN A 209 SHEET 1 C 8 GLY A 60C ASN A 60D 0 SHEET 2 C 8 VAL A 81 GLN A 90 -1 O VAL A 88 N GLY A 60C SHEET 3 C 8 ALA A 104 LEU A 108 -1 O LEU A 105 N LEU A 89 SHEET 4 C 8 ILE A 51 THR A 54 -1 N THR A 54 O ALA A 104 SHEET 5 C 8 GLY A 40 ALA A 48 -1 N ALA A 45 O LEU A 53 SHEET 6 C 8 MET A 30 ASN A 35 -1 N ASN A 35 O GLY A 40 SHEET 7 C 8 ILE A 64 GLY A 68 -1 O THR A 67 N ARG A 32 SHEET 8 C 8 VAL A 81 GLN A 90 -1 O VAL A 83 N ALA A 66 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.14 SSBOND 2 CYS A 168 CYS A 182 1555 1555 2.15 SSBOND 3 CYS A 191 CYS A 220 1555 1555 2.11 LINK OD1 ASP A 165 CA CA A 301 1555 1555 2.56 LINK OD2 ASP A 165 CA CA A 301 1555 1555 2.69 LINK O ALA A 177A CA CA A 301 1555 1555 2.31 LINK O MET A 180 CA CA A 301 1555 1555 2.33 LINK OE2 GLU A 230 CA CA A 301 1555 1555 2.47 LINK CA CA A 301 O HOH A 493 1555 1555 2.38 LINK CA CA A 301 O HOH A 507 1555 1555 2.39 SITE 1 AC1 6 ASP A 165 ALA A 177A MET A 180 GLU A 230 SITE 2 AC1 6 HOH A 493 HOH A 507 SITE 1 AC2 7 ASN A 144 ARG A 145 GLY A 149 SER A 150 SITE 2 AC2 7 HOH A 439 HOH A 595 HOH A 782 SITE 1 AC3 6 THR A 190 CYS A 191 VAL A 213 TRP A 215 SITE 2 AC3 6 HOH A 502 HOH A 503 SITE 1 AC4 4 GLU A 36 THR A 67 ARG A 84 HOH A 811 CRYST1 138.351 138.351 81.402 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007228 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012285 0.00000