HEADER TRANSFERASE 08-JUL-09 3I7B TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH BUMPED KINASE INHIBITOR NM-PP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 30-507; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1, TGCDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS PROTEIN KINASE, CALMODULIN, EF HAND, BUMPED KINASE INHIBITOR, ATP- KEYWDS 2 BINDING, KINASE, NUCLEOTIDE-BINDING, SERINE/THREONINE-PROTEIN KEYWDS 3 KINASE, STRUCTURAL GENOMICS, MEDICAL STRUCTURAL GENOMICS OF KEYWDS 4 PATHOGENIC PROTOZOA, MSGPP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 8 06-SEP-23 3I7B 1 REMARK SEQADV REVDAT 7 01-NOV-17 3I7B 1 REMARK REVDAT 6 13-JUL-11 3I7B 1 VERSN REVDAT 5 27-OCT-10 3I7B 1 REMARK REVDAT 4 21-JUL-10 3I7B 1 REMARK REVDAT 3 12-MAY-10 3I7B 1 JRNL REVDAT 2 28-APR-10 3I7B 1 JRNL REVDAT 1 09-FEB-10 3I7B 0 JRNL AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, JRNL AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, JRNL AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, JRNL AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS JRNL TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A JRNL TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20436472 JRNL DOI 10.1038/NSMB.1818 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, REMARK 1 AUTH 2 B.G.K.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.R.MULLER, REMARK 1 AUTH 3 C.L.M.J.VERLINDE,A.C.WHITE JR,E.A.MERRITT,W.C.VAN VOORHIS, REMARK 1 AUTH 4 D.J.MALY REMARK 1 TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF CDPK1 FROM REMARK 1 TITL 2 C. PARVUM AND T. GONDII REMARK 1 REF ACS MED.CHEM.LETT. V. 1 331 2010 REMARK 1 REFN ISSN 1948-5875 REMARK 1 DOI 10.1021/ML100096T REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0096 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3850 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2699 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5177 ; 0.878 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6581 ; 0.749 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 4.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;36.840 ;24.754 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 753 ;12.534 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.445 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4216 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 758 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2301 ; 0.985 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 945 ; 0.245 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3723 ; 1.724 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1549 ; 2.054 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1446 ; 3.245 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2020 15.4770 73.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.2829 T22: 0.2750 REMARK 3 T33: 0.2901 T12: -0.0106 REMARK 3 T13: -0.0217 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.4326 L22: 2.0606 REMARK 3 L33: 5.9522 L12: -0.8965 REMARK 3 L13: 1.0109 L23: -1.6990 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.0396 S13: 0.1230 REMARK 3 S21: 0.2363 S22: -0.0823 S23: -0.0710 REMARK 3 S31: -0.3340 S32: 0.1761 S33: 0.1511 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8060 13.0780 60.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.2263 REMARK 3 T33: 0.2806 T12: 0.0357 REMARK 3 T13: -0.0049 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.0020 L22: 1.0693 REMARK 3 L33: 3.4397 L12: -0.0582 REMARK 3 L13: -0.1445 L23: -0.8096 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: -0.0967 S13: -0.0739 REMARK 3 S21: 0.0661 S22: -0.0213 S23: 0.0325 REMARK 3 S31: -0.0119 S32: -0.0558 S33: 0.0016 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7240 16.5800 55.6350 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.2555 REMARK 3 T33: 0.2746 T12: -0.0019 REMARK 3 T13: -0.0047 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.7406 L22: 2.4496 REMARK 3 L33: 2.4099 L12: -0.6998 REMARK 3 L13: 0.4292 L23: -0.8421 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.0853 S13: 0.0887 REMARK 3 S21: 0.1426 S22: -0.0407 S23: -0.1023 REMARK 3 S31: -0.0661 S32: 0.0756 S33: 0.0110 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8030 20.4450 40.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.3013 REMARK 3 T33: 0.2675 T12: 0.0255 REMARK 3 T13: -0.0224 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.6611 L22: 1.7110 REMARK 3 L33: 1.7294 L12: -0.3244 REMARK 3 L13: 0.0447 L23: 0.1030 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: 0.1664 S13: -0.0433 REMARK 3 S21: -0.2757 S22: -0.0356 S23: 0.0293 REMARK 3 S31: 0.1415 S32: 0.1818 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 324 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5960 29.2130 54.7040 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.3825 REMARK 3 T33: 0.3244 T12: 0.0130 REMARK 3 T13: 0.0143 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.9386 L22: 4.0856 REMARK 3 L33: 9.2916 L12: -0.0421 REMARK 3 L13: 1.1418 L23: 3.9888 REMARK 3 S TENSOR REMARK 3 S11: -0.1423 S12: -0.0057 S13: -0.0394 REMARK 3 S21: 0.2921 S22: -0.0894 S23: 0.1205 REMARK 3 S31: 0.1244 S32: -0.0244 S33: 0.2317 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 356 A 382 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3560 34.1350 89.9170 REMARK 3 T TENSOR REMARK 3 T11: 0.3086 T22: 0.2318 REMARK 3 T33: 0.1259 T12: -0.0158 REMARK 3 T13: 0.0346 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 8.5931 L22: 7.3621 REMARK 3 L33: 5.6857 L12: -3.5865 REMARK 3 L13: 0.4622 L23: 0.2114 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: 0.0256 S13: 0.0717 REMARK 3 S21: 0.3938 S22: -0.3742 S23: 0.0359 REMARK 3 S31: -0.1667 S32: -0.6723 S33: 0.2174 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 383 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4350 27.8670 81.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.8174 REMARK 3 T33: 0.8570 T12: -0.0295 REMARK 3 T13: -0.1056 T23: -0.3987 REMARK 3 L TENSOR REMARK 3 L11: 23.4802 L22: 29.5392 REMARK 3 L33: 3.9021 L12: 24.6361 REMARK 3 L13: 19.0965 L23: 12.3376 REMARK 3 S TENSOR REMARK 3 S11: -0.4357 S12: 0.7106 S13: -0.0473 REMARK 3 S21: -2.0873 S22: 0.5817 S23: 1.7768 REMARK 3 S31: -0.7406 S32: 0.6360 S33: -0.1460 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8950 27.5220 82.9080 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.3804 REMARK 3 T33: 0.1920 T12: 0.0584 REMARK 3 T13: -0.0454 T23: -0.1035 REMARK 3 L TENSOR REMARK 3 L11: 6.7771 L22: 4.1222 REMARK 3 L33: 5.8358 L12: -4.5859 REMARK 3 L13: -4.0890 L23: 2.0597 REMARK 3 S TENSOR REMARK 3 S11: 0.4125 S12: 0.9932 S13: -0.4917 REMARK 3 S21: -0.3620 S22: -0.7896 S23: 0.2539 REMARK 3 S31: -0.0729 S32: -0.2673 S33: 0.3771 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 436 A 474 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8510 32.5580 53.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.3055 REMARK 3 T33: 0.2663 T12: 0.0186 REMARK 3 T13: -0.0478 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 4.6303 L22: 4.4722 REMARK 3 L33: 2.7877 L12: -2.0727 REMARK 3 L13: -1.5965 L23: 1.2633 REMARK 3 S TENSOR REMARK 3 S11: -0.2108 S12: -0.1022 S13: -0.1788 REMARK 3 S21: 0.2982 S22: 0.1895 S23: 0.1001 REMARK 3 S31: 0.1826 S32: -0.0349 S33: 0.0213 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 475 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 36.8070 44.1080 55.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.2429 REMARK 3 T33: 0.3198 T12: 0.0292 REMARK 3 T13: -0.0329 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.8889 L22: 2.7076 REMARK 3 L33: 4.1213 L12: 0.6972 REMARK 3 L13: 0.8495 L23: -1.2112 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.0275 S13: 0.2894 REMARK 3 S21: -0.0207 S22: 0.0781 S23: -0.0318 REMARK 3 S31: -0.3923 S32: 0.0064 S33: -0.0293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES ARE RESIDUAL ONLY REMARK 4 REMARK 4 3I7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.988 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3I79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 0.18 M AMMONIUM CITRATE, REMARK 280 4 MM NM-PP1; CRYOPROTECTED WITH 10% ETHYLENE GLYCOL, PH 6.5, REMARK 280 SITTING DROP VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.42550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 THR A 44 REMARK 465 ALA A 45 REMARK 465 LEU A 398 REMARK 465 ASP A 399 REMARK 465 ALA A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -8.69 76.48 REMARK 500 ARG A 173 -32.75 78.44 REMARK 500 ASP A 195 12.58 83.97 REMARK 500 ASP A 489 55.72 -116.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BK1 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I79 RELATED DB: PDB REMARK 900 APO FORM OF SAME PROTEIN REMARK 900 RELATED ID: 3I7C RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BUMPED KINASE INHIBITOR NA-PP2 REMARK 900 RELATED ID: 3N51 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3NCG RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR NM-PP1 DBREF 3I7B A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 3I7B GLY A -5 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7B PRO A -4 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7B GLY A -3 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7B SER A -2 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7B MET A -1 UNP Q9BJF5 EXPRESSION TAG SEQADV 3I7B MET A 0 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET BK1 A 701 24 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET DMS A 705 4 HETNAM BK1 1-(1-METHYLETHYL)-3-(NAPHTHALEN-1-YLMETHYL)-1H- HETNAM 2 BK1 PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN BK1 4-AMINO-1-ISO-PROPYL-3-(1-NAPHTHYLMETHYL)PYRAZOLO[3,4- HETSYN 2 BK1 D]PYRIMIDINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BK1 C19 H19 N5 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 DMS C2 H6 O S FORMUL 7 HOH *127(H2 O) HELIX 1 1 ILE A 46 ARG A 50 1 5 HELIX 2 2 ASP A 92 LEU A 106 1 15 HELIX 3 3 GLU A 135 ILE A 141 1 7 HELIX 4 4 SER A 147 ASN A 168 1 22 HELIX 5 5 LYS A 176 GLU A 178 5 3 HELIX 6 6 GLY A 197 PHE A 202 1 6 HELIX 7 7 LYS A 207 ILE A 212 1 6 HELIX 8 8 ALA A 219 GLY A 225 1 7 HELIX 9 9 GLU A 229 GLY A 246 1 18 HELIX 10 10 ASN A 254 GLY A 265 1 12 HELIX 11 11 LEU A 271 VAL A 277 5 7 HELIX 12 12 SER A 278 LEU A 289 1 12 HELIX 13 13 VAL A 292 ARG A 296 5 5 HELIX 14 14 SER A 298 ASP A 304 1 7 HELIX 15 15 HIS A 305 THR A 312 1 8 HELIX 16 16 LEU A 323 ASP A 368 1 46 HELIX 17 17 ASP A 376 LYS A 391 1 16 HELIX 18 18 ALA A 402 ASP A 415 1 14 HELIX 19 19 TYR A 424 THR A 436 1 13 HELIX 20 20 THR A 436 ASP A 451 1 16 HELIX 21 21 SER A 460 SER A 470 1 11 HELIX 22 22 ASP A 473 ASP A 485 1 13 HELIX 23 23 PHE A 494 CYS A 505 1 12 SHEET 1 A 5 TYR A 51 GLY A 60 0 SHEET 2 A 5 GLY A 63 ASP A 70 -1 O LEU A 67 N ARG A 55 SHEET 3 A 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 A 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N PHE A 118 O TYR A 125 SHEET 1 B 2 LEU A 180 LEU A 182 0 SHEET 2 B 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 C 2 GLN A 374 LEU A 375 0 SHEET 2 C 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 D 2 LYS A 457 SER A 459 0 SHEET 2 D 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 SITE 1 AC1 12 VAL A 65 ALA A 78 LYS A 80 MET A 112 SITE 2 AC1 12 LEU A 126 GLU A 129 VAL A 130 TYR A 131 SITE 3 AC1 12 LEU A 181 ASP A 195 EDO A 702 HOH A 811 SITE 1 AC2 5 MET A 112 ASP A 195 PHE A 196 BK1 A 701 SITE 2 AC2 5 HOH A 809 SITE 1 AC3 5 LYS A 211 GLY A 213 THR A 214 ALA A 215 SITE 2 AC3 5 VAL A 469 SITE 1 AC4 6 GLY A 225 THR A 226 TYR A 227 GLU A 444 SITE 2 AC4 6 ARG A 448 HOH A 864 SITE 1 AC5 4 TYR A 267 PHE A 269 ARG A 286 TYR A 421 CRYST1 47.243 72.851 65.713 90.00 98.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021167 0.000000 0.003269 0.00000 SCALE2 0.000000 0.013727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015398 0.00000